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Coll, Francesc; Phelan, Jody; Hill-Cawthorne, Grant A; Nair, Mridul B; Mallard, Kim; Ali, Shahjahan; Abdallah, Abdallah M; Alghamdi, Saad; Alsomali, Mona; Ahmed, Abdallah O; +41 more... Portelli, Stephanie; Oppong, Yaa; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Caws, Maxine; Chatterjee, Anirvan; Crampin, Amelia C; Dheda, Keertan; Furnham, Nicholas; Glynn, Judith R; Grandjean, Louis; Minh Ha, Dang; Hasan, Rumina; Hasan, Zahra; Hibberd, Martin L; Joloba, Moses; Jones-López, Edward C; Matsumoto, Tomoshige; Miranda, Anabela; Moore, David J; Mocillo, Nora; Panaiotov, Stefan; Parkhill, Julian; Penha, Carlos; Perdigão, João; Portugal, Isabel; Rchiad, Zineb; Robledo, Jaime; Sheen, Patricia; Shesha, Nashwa Talaat; Sirgel, Frik A; Sola, Christophe; Oliveira Sousa, Erivelton; Streicher, Elizabeth M; Helden, Paul Van; Viveiros, Miguel; Warren, Robert M; McNerney, Ruth; Pain, Arnab; Clark, Taane G; (2018) Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics, 50 (2). pp. 307-316. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-017-0029-0

Cook, Jackie; Owaga, Chrispin; Marube, Elizabeth; Baidjoe, Amrish; Stresman, Gillian; Migiro, Robin; Cox, Jon; Drakeley, Chris; Stevenson, Jennifer C; (2018) Risk factors for Plasmodium falciparum infection in the Kenyan Highlands: a cohort study. Transactions of The Royal Society of Tropical Medicine and Hygiene, 113 (3). pp. 152-159. ISSN 0035-9203 DOI: https://doi.org/10.1093/trstmh/try122

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Costa, Fernanda Cristina; Francisco, Amanda Fortes; Jayawardhana, Shiromani; Calderano, Simone Guedes; Lewis, Michael D; Olmo, Francisco; Beneke, Tom; Gluenz, Eva; Sunter, Jack; Dean, Samuel; +2 more... Kelly, John Morrison; Taylor, Martin Craig; (2018) Expanding the toolbox for Trypanosoma cruzi: A parasite line incorporating a bioluminescence-fluorescence dual reporter and streamlined CRISPR/Cas9 functionality for rapid in vivo localisation and phenotyping. PLoS neglected tropical diseases, 12 (4). e0006388-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006388

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Dinko, Bismarck; Ansah, Felix; Agyare-Kwabi, Comfort; Tagboto, Senyo; Amoah, Linda Eva; Urban, Britta C; Sutherland, Colin J; Awandare, Gordon A; Williamson, Kim C; Binka, Fred N; +1 more... Deitsch, Kirk W; (2018) Gametocyte Development and Carriage in Ghanaian Individuals with Uncomplicated Plasmodium falciparum Malaria. The American journal of tropical medicine and hygiene, 99 (1). pp. 57-64. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.18-0077

Divis, Paul CS; Duffy, Craig W; Kadir, Khamisah A; Singh, Balbir; Conway, David J; (2018) Genome-wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles. Molecular ecology, 27 (4). pp. 860-870. ISSN 0962-1083 DOI: https://doi.org/10.1111/mec.14477

Domman, Daryl; Chowdhury, Fahima; Khan, Ashraful I; Dorman, Matthew J; Mutreja, Ankur; Uddin, Muhammad Ikhtear; Paul, Anik; Begum, Yasmin A; Charles, Richelle C; Calderwood, Stephen B; +6 more... Bhuiyan, Taufiqur R; Harris, Jason B; LaRocque, Regina C; Ryan, Edward T; Qadri, Firdausi; Thomson, Nicholas R; (2018) Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh. Nature genetics, 50 (7). pp. 951-955. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0150-8

Dowd, Jennifer B; Fletcher, Helen A; Boccia, Delia; (2018) Social determinants and BCG efficacy: a call for a socio-biological approach to TB prevention. F1000Research, 7. 224-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14085.1

Duchene, Sebastian; Duchene, David A; Geoghegan, Jemma L; Dyson, Zoe A; Hawkey, Jane; Holt, Kathryn E; (2018) Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods. BMC EVOLUTIONARY BIOLOGY, 18 (1). 95-. ISSN 1471-2148 DOI: https://doi.org/10.1186/s12862-018-1210-5

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Duffy, Fergal J; Thompson, Ethan; Downing, Katrina; Suliman, Sara; Mayanja-Kizza, Harriet; Boom, W Henry; Thiel, Bonnie; Weiner Iii, January; Kaufmann, Stefan HE; Dover, Drew; +8 more... Tabb, David L; Dockrell, Hazel M; Ottenhoff, Tom HM; Tromp, Gerard; Scriba, Thomas J; Zak, Daniel E; Walzl, Gerhard; GC6-74 Consortium; (2018) A Serum Circulating miRNA Signature for Short-Term Risk of Progression to Active Tuberculosis Among Household Contacts. Frontiers in immunology, 9 (APR). 661-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.00661

Duggan, Gina M; Mostowy, Serge; (2018) Use of zebrafish to study Shigella infection. DISEASE MODELS & MECHANISMS, 11 (2). dmm032151-dmm032151. ISSN 1754-8403 DOI: https://doi.org/10.1242/dmm.032151

Elsheikha, Hany M; Regan, Carl S; Clark, C Graham; (2018) Novel Entamoeba Findings in Nonhuman Primates. Trends in parasitology, 34 (4). pp. 283-294. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2017.12.008

Ezewudo, Matthew; Borens, Amanda; Chiner-Oms, Álvaro; Miotto, Paolo; Chindelevitch, Leonid; Starks, Angela M; Hanna, Debra; Liwski, Richard; Zignol, Matteo; Gilpin, Christopher; +19 more... Niemann, Stefan; Kohl, Thomas Andreas; Warren, Robin M; Crook, Derrick; Gagneux, Sebastien; Hoffner, Sven; Rodrigues, Camilla; Comas, Iñaki; Engelthaler, David M; Alland, David; Rigouts, Leen; Lange, Christoph; Dheda, Keertan; Hasan, Rumina; McNerney, Ruth; Cirillo, Daniela M; Schito, Marco; Rodwell, Timothy C; Posey, James; (2018) Integrating standardized whole genome sequence analysis with a global Mycobacterium tuberculosis antibiotic resistance knowledgebase. SCIENTIFIC REPORTS, 8 (1). 15382-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33731-1

Fang, Hanwei; Gomes, Ana Rita; Klages, Natacha; Pino, Paco; Maco, Bohumil; Walker, Eloise M; Zenonos, Zenon A; Angrisano, Fiona; Baum, Jake; Doerig, Christian; +3 more... Baker, David A; Billker, Oliver; Brochet, Mathieu; (2018) Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites. Nature communications, 9 (1). 4248-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-06733-w

Faulds-Pain, Alexandra; Shaw, Helen Alexandra; Terra, Vanessa Sofia; Kellner, Steven; Brockmeier, Susan L; Wren, Brendan W; (2018) The Streptococcos suis sortases SrtB and SrtF are essential for disease in pigs. Microbiology, 165 (2). pp. 163-173. ISSN 1350-0872 DOI: https://doi.org/10.1099/mic.0.000752

Fernandes, Jorlan; Guterres, Alexandro; de Oliveira, Renata Carvalho; Chamberlain, John; Lewandowski, Kuiama; Teixeira, Bernardo Rodrigues; Coelho, Thayssa Alves; Crisóstomo, Charle Ferreira; Bonvicino, Cibele Rodrigues; D'Andrea, Paulo Sérgio; +2 more... Hewson, Roger; de Lemos, Elba Regina Sampaio; (2018) Xapuri virus, a novel mammarenavirus: natural reassortment and increased diversity between New World viruses. Emerging microbes & infections, 7 (1). 120-. ISSN 2222-1751 DOI: https://doi.org/10.1038/s41426-018-0119-9

Ferreras Antolín, Laura; Kadambari, Seilesh; Braccio, Serena; Tang, Julian Wei-Tze; Xerry, Jacqueline; Allen, David James; Ladhani, Shamez N; Parechovirus Surveillance Network; (2018) Increased detection of human parechovirus infection in infants in England during 2016: epidemiology and clinical characteristics. Archives of disease in childhood, 103 (11). pp. 1061-1066. ISSN 0003-9888 DOI: https://doi.org/10.1136/archdischild-2017-314281 Full text not available from this repository.

Fletcher, Helen A; (2018) Systems approaches to correlates of protection and progression to TB disease. Seminars in immunology, 39 (C). pp. 81-87. ISSN 1044-5323 DOI: https://doi.org/10.1016/j.smim.2018.10.001 Full text not available from this repository.

Fletcher, Helen A; Chatterjee, Mitali; Cooper, Andrea; Hussell, Tracy; Kaye, Paul M; Prior, Joann; Reljic, Rajko; Vermaak, Samantha; Vordermeier, Martin; Williams, Ann; +1 more... McShane, Helen; (2018) VALIDATE: Exploiting the synergy between complex intracellular pathogens to expedite vaccine research and development for tuberculosis, leishmaniasis, melioidosis and leprosy. F1000Research, 7. 485-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14386.1

Fornace, Kimberly M; Herman, Lou S; Abidin, Tommy R; Chua, Tock Hing; Daim, Sylvia; Lorenzo, Pauline J; Grignard, Lynn; Nuin, Nor Afizah; Ying, Lau Tiek; Grigg, Matthew J; +5 more... William, Timothy; Espino, Fe; Cox, Jonathan; Tetteh, Kevin KA; Drakeley, Chris J; (2018) Exposure and infection to Plasmodium knowlesi in case study communities in Northern Sabah, Malaysia and Palawan, The Philippines. PLoS neglected tropical diseases, 12 (6). e0006432-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006432

Fornace, Kimberly M; Surendra, Henry; Abidin, Tommy Rowel; Reyes, Ralph; Macalinao, Maria LM; Stresman, Gillian; Luchavez, Jennifer; Ahmad, Riris A; Supargiyono, Supargiyono; Espino, Fe; +2 more... Drakeley, Chris J; Cook, Jackie; (2018) Use of mobile technology-based participatory mapping approaches to geolocate health facility attendees for disease surveillance in low resource settings. International journal of health geographics, 17 (1). 21-. ISSN 1476-072X DOI: https://doi.org/10.1186/s12942-018-0141-0

Francisco, Amanda Fortes; Jayawardhana, Shiromani; Taylor, Martin C; Lewis, Michael D; Kelly, John M; (2018) Assessing the Effectiveness of Curative Benznidazole Treatment in Preventing Chronic Cardiac Pathology in Experimental Models of Chagas Disease. Antimicrobial agents and chemotherapy, 62 (10). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00832-18

Fraschka, Sabine A; Filarsky, Michael; Hoo, Regina; Niederwieser, Igor; Yam, Xue Yan; Brancucci, Nicolas MB; Mohring, Franziska; Mushunje, Annals T; Huang, Ximei; Christensen, Peter R; +8 more... Nosten, Francois; Bozdech, Zbynek; Russell, Bruce; Moon, Robert W; Marti, Matthias; Preiser, Peter R; Bártfai, Richárd; Voss, Till S; (2018) Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites. Cell host & microbe, 23 (3). 407-420.e8. ISSN 1931-3128 DOI: https://doi.org/10.1016/j.chom.2018.01.008

Gatuguta, Anne; Merrill, Katherine G; Colombini, Manuela; Soremekun, Seyi; Seeley, Janet; Mwanzo, Isaac; Devries, Karen; (2018) Missed treatment opportunities and barriers to comprehensive treatment for sexual violence survivors in Kenya: a mixed methods study. BMC public health, 18 (1). 769-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-018-5681-5

Ghashghaei, Ouldouz; Kielland, Nicola; Revés, Marc; Taylor, Martin C; Kelly, John M; Di Pietro, Ornella; Muñoz-Torrero, Diego; Pérez, Belén; Lavilla, Rodolfo; (2018) Tetrasubstituted Imidazolium Salts as Potent Antiparasitic Agents against African and American Trypanosomiases. Molecules (Basel, Switzerland), 23 (1). p. 177. ISSN 1420-3049 DOI: https://doi.org/10.3390/molecules23010177

Giuliani, Sandra; Silva, Arthur C; Borba, Joyce VVB; Ramos, Pablo IP; Paveley, Ross A; Muratov, Eugene N; Andrade, Carolina Horta; Furnham, Nicholas; (2018) Computationally-guided drug repurposing enables the discovery of kinase targets and inhibitors as new schistosomicidal agents. PLoS computational biology, 14 (10). e1006515-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006515

Gorrie, Claire L; Mirceta, Mirjana; Wick, Ryan R; Judd, Louise M; Wyres, Kelly L; Thomson, Nicholas R; Strugnell, Richard A; Pratt, Nigel F; Garlick, Jill S; Watson, Kerrie M; +5 more... Hunter, Peter C; McGloughlin, Steve A; Spelman, Denis W; Jenney, Adam WJ; Holt, Kathryn E; (2018) Antimicrobial-Resistant Klebsiella pneumoniae Carriage and Infection in Specialized Geriatric Care Wards Linked to Acquisition in the Referring Hospital. CLINICAL INFECTIOUS DISEASES, 67 (2). pp. 161-170. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy027

Gouliouris, Theodore; Raven, Kathy E; Ludden, Catherine; Blane, Beth; Corander, Jukka; Horner, Carolyne S; Hernandez-Garcia, Juan; Wood, Paul; Hadjirin, Nazreen F; Radakovic, Milorad; +5 more... Holmes, Mark A; de Goffau, Marcus; Brown, Nicholas M; Parkhill, Julian; Peacock, Sharon J; (2018) Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom. mBio, 9 (6). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01780-18

Greenhouse, Bryan; Smith, David L; Rodríguez-Barraquer, Isabel; Mueller, Ivo; Drakeley, Chris J; (2018) Taking Sharper Pictures of Malaria with CAMERAs: Combined Antibodies to Measure Exposure Recency Assays. The American journal of tropical medicine and hygiene, 99 (5). pp. 1120-1127. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.18-0303

Grigg, Matthew J; William, Timothy; Barber, Bridget E; Rajahram, Giri S; Menon, Jayaram; Schimann, Emma; Piera, Kim; Wilkes, Christopher S; Patel, Kaajal; Chandna, Arjun; +3 more... Drakeley, Christopher J; Yeo, Tsin W; Anstey, Nicholas M; (2018) Age-Related Clinical Spectrum of Plasmodium knowlesi Malaria and Predictors of Severity. Clinical infectious diseases, 67 (3). pp. 350-359. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy065

Grignard, Lynn; Gonçalves, Bronner P; Early, Angela M; Daniels, Rachel F; Tiono, Alfred B; Guelbéogo, Wamdaogo M; Ouédraogo, Alphonse; van Veen, Elke M; Lanke, Kjerstin; Diarra, Amidou; +8 more... Nebie, Issa; Sirima, Sodiomon B; Targett, Geoff A; Volkman, Sarah K; Neafsey, Daniel E; Wirth, Dyann F; Bousema, Teun; Drakeley, Chris; (2018) Transmission of molecularly undetectable circulating parasite clones leads to high infection complexity in mosquitoes post feeding. International journal for parasitology, 48 (8). pp. 671-677. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2018.02.005

Grint, Daniel; Alisjhabana, Bachti; Ugarte-Gil, Cesar; Riza, Anca-Leila; Walzl, Gerhard; Pearson, Fiona; Ruslami, Rovina; Moore, David AJ; Ioana, Mihai; McAllister, Susan; +10 more... Ronacher, Katharina; Koeseomadinata, Raspati C; Kerry-Barnard, Sarah R; Coronel, Jorge; Malherbe, Stephanus T; Dockrell, Hazel M; Hill, Philip C; Van Crevel, Reinout; Critchley, Julia A; TANDEM consortium; (2018) Accuracy of diabetes screening methods used for people with tuberculosis, Indonesia, Peru, Romania, South Africa. Bulletin of the World Health Organization, 96 (11). pp. 738-749. ISSN 0042-9686 DOI: https://doi.org/10.2471/BLT.17.206227

Guelbéogo, Wamdaogo M; Gonçalves, Bronner Pamplona; Grignard, Lynn; Bradley, John; Serme, Samuel S; Hellewell, Joel; Lanke, Kjerstin; Zongo, Soumanaba; Sepúlveda, Nuno; Soulama, Issiaka; +5 more... Wangrawa, Dimitri W; Yakob, Laith; Sagnon, N'Falé; Bousema, Teun; Drakeley, Chris; (2018) Variation in natural exposure to anopheles mosquitoes and its effects on malaria transmission. eLife, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.32625

Guo, Minshan; Wang, Ke; Qiao, Ning; Yardley, Vanessa; Li, Mingzhong; (2018) Investigating Permeation Behavior of Flufenamic Acid Cocrystals Using a Dissolution and Permeation System. Molecular pharmaceutics, 15 (9). pp. 4257-4272. ISSN 1543-8384 DOI: https://doi.org/10.1021/acs.molpharmaceut.8b00670

Gupta-Wright, Ankur; Tomlinson, Gillian S; Rangaka, Molebogeng X; Fletcher, Helen A; (2018) World TB Day 2018: The Challenge of Drug Resistant Tuberculosis. F1000Research, 7. 217-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.14088.1

Harding-Esch, EM; Cousins, EC; Chow, S-LC; Phillips, LT; Hall, CL; Cooper, N; Fuller, SS; Nori, AV; Patel, R; Thomas-William, S; +8 more... Whitlock, G; Edwards, SJE; Green, M; Clarkson, J; Arlett, B; Dunbar, JK; Lowndes, CM; Sadiq, ST; (2018) A 30-Min Nucleic Acid Amplification Point-of-Care Test for Genital Chlamydia trachomatis Infection in Women: A Prospective, Multi-center Study of Diagnostic Accuracy. EBioMedicine, 28. pp. 120-127. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2017.12.029

Harding-Esch, EM; Fuller, SS; Chow, S-LC; Nori, AV; Harrison, MA; Parker, M; Piepenburg, O; Forrest, MS; Brooks, DG; Patel, R; +8 more... Hay, PE; Fearnley, N; Pond, MJ; Dunbar, JK; Butcher, PD; Planche, T; Lowndes, CM; Sadiq, ST; (2018) Diagnostic accuracy of a prototype rapid chlamydia and gonorrhoea recombinase polymerase amplification assay: a multicentre cross-sectional preclinical evaluation. Clinical microbiology and infection, 25 (3). 380.e1-380.e7. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2018.06.003

Harvala, Heli; Broberg, Eeva; Benschop, Kimberley; Berginc, Natasa; Ladhani, Shamez; Susi, Petri; Christiansen, Claus; McKenna, James; Allen, David; Makiello, Phoebe; +56 more... McAllister, Georgina; Carmen, Mirabelli; Zakikhany, Katherina; Dyrdak, Robert; Nielsen, Xiaohui; Madsen, Tina; Paul, Joel; Moore, Catherine; von Eije, Karin; Piralla, Antonio; Carlier, Mieke; Vanoverschelde, Laura; Poelman, Randy; Anton, Andrés; López-Labrador, F Xavier; Pellegrinelli, Laura; Keeren, Kathrin; Maier, Melanie; Cassidy, Hayley; Derdas, Stavros; Savolainen-Kopra, Carita; Diedrich, Sabine; Nordbø, Svein; Buesa, Javier; Bailly, Jean-Luc; Baldanti, Fausto; MacAdam, Andrew; Mirand, Audrey; Dudman, Susanne; Schuffenecker, Isabelle; Kadambari, Seilesh; Neyts, Johan; Griffiths, Michael J; Richter, Jan; Margaretto, Cristina; Govind, Sheila; Morley, Ursula; Adams, Ortwin; Krokstad, Sidsel; Dean, Jonathan; Pons-Salort, Margarita; Prochazka, Birgit; Cabrerizo, Maria; Majumdar, Manasi; Nebbia, Gaia; Wiewel, Maryse; Cottrell, Simon; Coyle, Peter; Martin, Javier; Moore, Catrin; Midgley, Sofie; Horby, Peter; Wolthers, Katja; Simmonds, Peter; Niesters, Hubert; Fischer, Thea K; (2018) Recommendations for enterovirus diagnostics and characterisation within and beyond Europe. Journal of clinical virology, 101. pp. 11-17. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2018.01.008

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Pfanzelter, Julia; Mostowy, Serge; Way, Michael; (2018) Septins suppress the release of vaccinia virus from infected cells. The Journal of cell biology, 217 (8). pp. 2911-2929. ISSN 0021-9525 DOI: https://doi.org/10.1083/jcb.201708091

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