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Ali, Huda Ahmed; Hartner, Anna-Maria; Echeverria-Londono, Susy; Roth, Jeremy; Li, Xiang; Abbas, Kaja; Portnoy, Allison; Vynnycky, Emilia; Woodruff, Kim; Ferguson, Neil M; +2 more... Toor, Jaspreet; Gaythorpe, Katy Am; (2022) Vaccine equity in low and middle income countries: a systematic review and meta-analysis. International Journal for Equity in Health, 21 (1). 82-. DOI: https://doi.org/10.1186/s12939-022-01678-5

Atkins, Katherine E; Hodgson, David; Jit, Mark; Davies, Nicholas G; (2022) Evaluating the impact of Respiratory Syncytial Virus immunisation strategies on antibiotic use and drug resistant bacterial infections in England. Wellcome Open Research, 7. p. 286. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.18183.1

Bacigalupo, Sonny A; Chang, Yu-Mei; Dixon, Linda K; Gubbins, Simon; Kucharski, Adam J; Drewe, Julian A; (2022) The importance of fine-scale predictors of wild boar habitat use in an isolated population. Ecology and Evolution, 12 (6). e9031-. ISSN 2045-7758 DOI: https://doi.org/10.1002/ece3.9031

Bacigalupo, Sonny A; Dixon, Linda K; Gubbins, Simon; Kucharski, Adam J; Drewe, Julian A; (2022) Wild boar visits to commercial pig farms in southwest England: implications for disease transmission. European journal of wildlife research, 68 (6). 69-. ISSN 1612-4642 DOI: https://doi.org/10.1007/s10344-022-01618-2

Baede, Valérie O; Tavakol, Mehri; Vos, Margreet C; Knight, Gwenan M; van Wamel, Willem JB; MACOTRA study group; (2022) Dehydration Tolerance in Epidemic versus Nonepidemic MRSA Demonstrated by Isothermal Microcalorimetry. Microbiology Spectrum, 10 (5). e0061522-. ISSN 2165-0497 DOI: https://doi.org/10.1128/spectrum.00615-22

Banks, Christopher J; Colman, Ewan; Doherty, Thomas; Tearne, Oliver; Arnold, Mark; Atkins, Katherine E; Balaz, Daniel; Beaunée, Gaël; Bessell, Paul R; Enright, Jessica; +4 more... Kleczkowski, Adam; Rossi, Gianluigi; Ruget, Anne-Sophie; Kao, Rowland R; (2022) SCoVMod – a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics. Wellcome Open Research, 7. p. 161. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.17716.1

Barnard, Rosanna C; Davies, Nicholas G; Centre for Mathematical Modelling of Infectious Diseases COVID-1; Jit, Mark; Edmunds, W John; (2022) Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era. Nature Communications, 13 (1). 4879-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-022-32404-y

Bednarska, Natalia; (2022) Critical Assessment of Current Health Policies Used for Managing Diabetes in the United Kingdom. Journal of community medicine and public health, 6 (2). ISSN 2577-2228 DOI: https://doi.org/10.29011/2577-2228.100260

Benest, John; Rhodes, Sophie; Evans, Thomas G; White, Richard G; (2022) The Correlated Beta Dose Optimisation Approach: Optimal Vaccine Dosing Using Mathematical Modelling and Adaptive Trial Design. Vaccines, 10 (11). p. 1838. ISSN 2076-393X DOI: https://doi.org/10.3390/vaccines10111838

Benest, John; Rhodes, Sophie; Evans, Thomas G; White, Richard G; (2022) Mathematical Modelling for Optimal Vaccine Dose Finding: Maximising Efficacy and Minimising Toxicity. Vaccines, 10 (5). p. 756. ISSN 2076-393X DOI: https://doi.org/10.3390/vaccines10050756

Bhaskaran, Krishnan; Rentsch, Christopher T; Hickman, George; Hulme, William J; Schultze, Anna; Curtis, Helen J; Wing, Kevin; Warren-Gash, Charlotte; Tomlinson, Laurie; Bates, Chris J; +22 more... Mathur, Rohini; MacKenna, Brian; Mahalingasivam, Viyaasan; Wong, Angel; Walker, Alex J; Morton, Caroline E; Grint, Daniel; Mehrkar, Amir; Eggo, Rosalind M; Inglesby, Peter; Douglas, Ian J; McDonald, Helen I; Cockburn, Jonathan; Williamson, Elizabeth J; Evans, David; Parry, John; Hester, Frank; Harper, Sam; Evans, Stephen Jw; Bacon, Sebastian; Smeeth, Liam; Goldacre, Ben; (2022) Overall and cause-specific hospitalisation and death after COVID-19 hospitalisation in England: A cohort study using linked primary care, secondary care, and death registration data in the OpenSAFELY platform. PLoS medicine, 19 (1). e1003871-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003871

Biggs, Joseph R; Sy, Ava Kristy; Ashall, James; Santoso, Marsha S; Brady, Oliver J; Reyes, Mary Anne Joy; Quinones, Mary Ann; Jones-Warner, William; Tandoc, Amadou O; Sucaldito, Nemia L; +23 more... Mai, Huynh Kim; Lien, Le Thuy; Thai, Hung Do; Nguyen, Hien Anh Thi; Anh, Dang Duc; Iwasaki, Chihiro; Kitamura, Noriko; Van Loock, Marnix; Herrera-Taracena, Guillermo; Menten, Joris; Rasschaert, Freya; Van Wesenbeeck, Liesbeth; Masyeni, Sri; Haryanto, Sotianingsih; Yohan, Benediktus; Cutiongco-de la Paz, Eva; Yoshida, Lay-Myint; Hue, Stephane; Rosario Z Capeding, Maria; Padilla, Carmencita D; Sasmono, R Tedjo; Hafalla, Julius Clemence R; Hibberd, Martin L; (2022) Combining rapid diagnostic tests to estimate primary and post-primary dengue immune status at the point of care. PLoS Neglected Tropical Diseases, 16 (5). e0010365-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0010365

Borghi, Josephine; Ismail, Sharif; Hollway, James; Kim, Rakhyun E; Sturmberg, Joachim; Brown, Garrett; Mechler, Reinhard; Volmink, Heinrich; Spicer, Neil; Chalabi, Zaid; +8 more... Cassidy, Rachel; Johnson, Jeff; Foss, Anna; Koduah, Augustina; Searle, Christa; Komendantova, Nadejda; Semwanga, Agnes; Moon, Suerie; (2022) Viewing the global health system as a complex adaptive system - implications for research and practice. F1000Research, 11. 1147-. ISSN 2046-1402 DOI: https://doi.org/10.12688/f1000research.126201.1

Borlase, Anna; Le Rutte, Epke A; Castaño, Soledad; Blok, David J; Toor, Jaspreet; Giardina, Federica; Davis, Emma L; NTD Modelling Consortium; (2022) Evaluating and mitigating the potential indirect effect of COVID-19 on control programmes for seven neglected tropical diseases: a modelling study. The Lancet Global health, 10 (11). e1600-e1611. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(22)00360-6

Bosse, Nikos I; Abbott, Sam; Bracher, Johannes; Hain, Habakuk; Quilty, Billy J; Jit, Mark; Centre for the Mathematical Modelling of Infectious Diseases COV; van Leeuwen, Edwin; Cori, Anne; Funk, Sebastian; (2022) Comparing human and model-based forecasts of COVID-19 in Germany and Poland. PLoS computational biology, 18 (9). e1010405-. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1010405

Bozzani, Fiammetta M; Terris-Prestholt, Fern; Quaife, Matthew; Gafos, Mitzy; Indravudh, Pitchaya P; Giddings, Rebecca; Medley, Graham F; Malhotra, Shelly; Torres-Rueda, Sergio; (2022) Costs and Cost-Effectiveness of Biomedical, Non-Surgical HIV Prevention Interventions: A Systematic Literature Review. PharmacoEconomics, 41 (5). pp. 467-480. ISSN 1170-7690 DOI: https://doi.org/10.1007/s40273-022-01223-w

Brady, Oliver J; Tian, Huaiyu; (2022) Additional considerations for assessing COVID-19 impact on dengue transmission - Authors' reply. Lancet infectious diseases, 22 (6). 763-. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(22)00289-4

Burger, Emily A; Laprise, Jean-François; Sy, Stephen; Regan, Mary Caroline; Prem, Kiesha; Jit, Mark; Brisson, Marc; Kim, Jane J; (2022) Now or later: Health impacts of delaying single-dose HPV vaccine implementation in a high-burden setting. International Journal of Cancer, 151 (10). pp. 1804-1809. ISSN 0020-7136 DOI: https://doi.org/10.1002/ijc.34054

Chapman, Lloyd AC; Barnard, Rosanna C; Russell, Timothy W; Abbott, Sam; van Zandvoort, Kevin; Davies, Nicholas G; Kucharski, Adam J; (2022) Unexposed populations and potential COVID-19 hospitalisations and deaths in European countries as per data up to 21 November 2021. Euro surveillance, 27 (1). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2022.27.1.2101038

Chen, Yuyang; Li, Naizhe; Lourenço, José; Wang, Lin; Cazelles, Bernard; Dong, Lu; Li, Bingying; Liu, Yang; Jit, Mark; Bosse, Nikos I; +6 more... Abbott, Sam; Velayudhan, Raman; Wilder-Smith, Annelies; Tian, Huaiyu; Brady, Oliver J; CMMID COVID-19 Working Group; (2022) Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study. The Lancet. Infectious diseases, 22 (5). pp. 657-667. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(22)00025-1

Choisy, Marc; McBride, Angela; Chambers, Mary; Ho Quang, Chanh; Nguyen Quang, Huy; Xuan Chau, Nguyen Thi; Thi, Giang Nguyen; Bonell, Ana; Evans, Megan; Ming, Damien; +17 more... Ngo-Duc, Thanh; Quang Thai, Pham; Dang Giang, Duy Hoang; Dan Thanh, Ho Ngoc; Ngoc Nhung, Hoang; Lowe, Rachel; Maude, Richard; Elyazar, Iqbal; Surendra, Henry; Ashley, Elizabeth A; Thwaites, Louise; van Doorn, H Rogier; Kestelyn, Evelyne; Dondorp, Arjen M; Thwaites, Guy; Vinh Chau, Nguyen Van; Yacoub, Sophie; (2022) Climate change and health in Southeast Asia - defining research priorities and the role of the Wellcome Trust Africa Asia Programmes. Wellcome Open Research, 6. 278-. ISSN 0954-0121 DOI: https://doi.org/10.12688/wellcomeopenres.17263.3

Choisy, Marc; McBride, Angela; Chambers, Mary; Ho Quang, Chanh; Nguyen Quang, Huy; Xuan Chau, Nguyen Thi; Thi, Giang Nguyen; Bonell, Ana; Evans, Megan; Ming, Damien; +17 more... Ngo-Duc, Thanh; Quang Thai, Pham; Dang Giang, Duy Hoang; Dan Thanh, Ho Ngoc; Ngoc Nhung, Hoang; Lowe, Rachel; Maude, Richard; Elyazar, Iqbal; Surendra, Henry; Ashley, Elizabeth A; Thwaites, Louise; van Doorn, H Rogier; Kestelyn, Evelyne; Dondorp, Arjen M; Thwaites, Guy; Vinh Chau, Nguyen Van; Yacoub, Sophie; (2022) Climate change and health in Southeast Asia – defining research priorities and the role of the Wellcome Trust Africa Asia Programmes. Wellcome Open Research, 6. p. 278. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.17263.2

Colton, Hayley; Hodgson, David; Hornsby, Hailey; Brown, Rebecca; Mckenzie, Joanne; Bradley, Kirsty L; James, Cameron; Lindsey, Benjamin B; Birch, Sarah; Marsh, Louise; +14 more... Wood, Steven; Bayley, Martin; Dickson, Gary; James, David C; Nicklin, Martin J; Sayers, Jon R; Zafred, Domen; Rowland-Jones, Sarah L; Kudesia, Goura; Kucharski, Adam; CMMID COVID-19 Working Group; Darton, Thomas C; de Silva, Thushan I; Collini, Paul J; (2022) Risk factors for SARS-CoV-2 seroprevalence following the first pandemic wave in UK healthcare workers in a large NHS Foundation Trust. Wellcome Open Research, 6. 220-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.17143.3

Cramer, Estee Y; Huang, Yuxin; Wang, Yijin; Ray, Evan L; Cornell, Matthew; Bracher, Johannes; Brennen, Andrea; Rivadeneira, Alvaro J Castro; Gerding, Aaron; House, Katie; +13 more... Jayawardena, Dasuni; Kanji, Abdul Hannan; Khandelwal, Ayush; Le, Khoa; Mody, Vidhi; Mody, Vrushti; Niemi, Jarad; Stark, Ariane; Shah, Apurv; Wattanchit, Nutcha; Zorn, Martha W; Reich, Nicholas G; US COVID-19 Forecast Hub Consortium; (2022) The United States COVID-19 Forecast Hub dataset. Scientific data, 9 (1). 462-. ISSN 2052-4463 DOI: https://doi.org/10.1038/s41597-022-01517-w

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Curtis, Helen J; Inglesby, Peter; MacKenna, Brian; Croker, Richard; Hulme, William J; Rentsch, Christopher T; Bhaskaran, Krishnan; Mathur, Rohini; Morton, Caroline E; Bacon, Sebastian Cj; +27 more... Smith, Rebecca M; Evans, David; Mehrkar, Amir; Tomlinson, Laurie; Walker, Alex J; Bates, Christopher; Hickman, George; Ward, Tom; Morley, Jessica; Cockburn, Jonathan; Davy, Simon; Williamson, Elizabeth J; Eggo, Rosalind M; Parry, John; Hester, Frank; Harper, Sam; O'Hanlon, Shaun; Eavis, Alex; Jarvis, Richard; Avramov, Dima; Griffiths, Paul; Fowles, Aaron; Parkes, Nasreen; Evans, Stephen Jw; Douglas, Ian J; Smeeth, Liam; Goldacre, Ben; (2022) Recording of 'COVID-19 vaccine declined': a cohort study on 57.9 million National Health Service patients' records in situ using OpenSAFELY, England, 8 December 2020 to 25 May 2021. Eurosurveillance, 27 (33). ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2022.27.33.2100885

Dale, Katie D; Schwalb, Alvaro; Houben, Rein MGJ; (2022) Estimating annual risk of infection with Mycobacterium tuberculosis. The Lancet Infectious diseases, 22 (9). pp. 1275-1276. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(22)00452-2

Deol, AK; Shaikh, N; Middelkoop, K; Mohlamonyane, M; White, RG; McCreesh, N; (2022) Importance of ventilation and occupancy to Mycobacterium tuberculosis transmission rates in congregate settings. BMC public health, 22 (1). 1772-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-022-14133-5

Dial, Natalie J; Croft, Simon L; Chapman, Lloyd AC; Terris-Prestholt, Fern; Medley, Graham F; (2022) Challenges of using modelling evidence in the visceral leishmaniasis elimination programme in India. PLOS global public health, 2 (11). e0001049-. ISSN 2767-3375 DOI: https://doi.org/10.1371/journal.pgph.0001049

Diamond, Charlie; Gong, Hui; Sun, Fiona Yueqian; Liu, Yang; Quilty, Billy J; Jit, Mark; Yang, Juan; Yu, Hongjie; Edmunds, W John; Baguelin, Marc; (2022) Regional-based within-year seasonal variations in influenza-related health outcomes across mainland China: a systematic review and spatio-temporal analysis. BMC Medicine, 20 (1). 58-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-022-02269-5

Echeverria-Londono, Susy; Hartner, Anna-Maria; Li, Xiang; Roth, Jeremy; Portnoy, Allison; Sbarra, Alyssa N; Abbas, Kaja; Ferrari, Matthew; Fu, Han; Jit, Mark; +2 more... Ferguson, Neil M; Gaythorpe, Katy AM; (2022) Exploring the subnational inequality and heterogeneity of the impact of routine measles immunisation in Africa. Vaccine, 40 (47). pp. 6806-6817. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2022.09.049

Emes, David; Naylor, Nichola; Waage, Jeff; Knight, Gwenan; (2022) Quantifying the Relationship between Antibiotic Use in Food-Producing Animals and Antibiotic Resistance in Humans. Antibiotics (Basel, Switzerland), 11 (1). p. 66. ISSN 2079-6382 DOI: https://doi.org/10.3390/antibiotics11010066

Endo 遠藤彰, Akira; CMMID COVID-19 Working Group; Uchida 内田満夫, Mitsuo; Liu 刘扬, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian; (2022) Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. Proceedings of the National Academy of Sciences of the United States of America, 119 (37). e2203019119-. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2203019119

Endo, Akira; Murayama, Hiroaki; Abbott, Sam; Ratnayake, Ruwan; Pearson, Carl AB; Edmunds, W John; Fearon, Elizabeth; Funk, Sebastian; (2022) Heavy-tailed sexual contact networks and monkeypox epidemiology in the global outbreak, 2022. Science (New York, N.Y.), 378 (6615). pp. 90-94. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.add4507

Esmail, Hanif; Macpherson, Liana; Coussens, Anna K; Houben, Rein MGJ; (2022) Mind the gap - Managing tuberculosis across the disease spectrum. EBioMedicine, 78. 103928-. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2022.103928

Finch, Emilie; Lowe, Rachel; Fischinger, Stephanie; de St Aubin, Michael; Siddiqui, Sameed M; Dayal, Diana; Loesche, Michael A; Rhee, Justin; Beger, Samuel; Hu, Yiyuan; +9 more... Gluck, Matthew J; Mormann, Benjamin; Hasdianda, Mohammad A; Musk, Elon R; Alter, Galit; Menon, Anil S; Nilles, Eric J; Kucharski, Adam J; CMMID COVID-19 working group and the SpaceX COVID-19 Cohort Coll; (2022) SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort. PLoS Biology, 20 (2). e3001531-. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.3001531

Foss, Anna M; Kohler, Sophia; Kulkarni, Sumedh; Sutton, Natalina; Schreiner, Mary-Ann; Centemero, Nicolò Saverio; Mambula, Grace; Lohman, Diederik; Smith, Sarah C; French, Rebecca; (2022) Triadic partnerships: Evaluation of a group mentorship scheme. International Journal for Students as Partners, 6 (1). pp. 199-211. DOI: https://doi.org/10.15173/ijsap.v6i1.4858

Foster, Nicola; Nguyen, Hai V; Nguyen, Nhung V; Nguyen, Hoa B; Tiemersma, Edine W; Cobelens, Frank GJ; Quaife, Matthew; Houben, Rein MGJ; (2022) Social determinants of the changing tuberculosis prevalence in Việt Nam: Analysis of population-level cross-sectional studies. PLOS Medicine, 19 (3). e1003935-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003935

Friedsam, Amelie M; Brady, Oliver J; Pilic, Antonia; Dobler, Gerhard; Hellenbrand, Wiebke; Nygren, Teresa M; (2022) Geo-Spatial Characteristics of 567 Places of Tick-Borne Encephalitis Infection in Southern Germany, 2018-2020. MICROORGANISMS, 10 (3). p. 643. DOI: https://doi.org/10.3390/microorganisms10030643

Funk, Sebastian; Abbott, Sam; Bracher, Johannes; (2022) Sebastian Funk, Sam Abbott and Johannes Bracher’s Discussion Contribution to the Papers in Session 2 of The Royal Statistical Society’s Special Topic Meeting on Covid-19 Transmission: 11 June 2021. Journal of the Royal Statistical Society Series A: Statistics in Society, 185 (Supple). S103-S104. ISSN 0964-1998 DOI: https://doi.org/10.1111/rssa.12974

Garcia-Basteiro, Alberto L; White, Richard G; Tait, Dereck; Schmidt, Alexander C; Rangaka, Molebogeng X; Quaife, Matthew; Nemes, Elisa; Mogg, Robin; Hill, Philip C; Harris, Rebecca C; +9 more... Hanekom, Willem A; Frick, Mike; Fiore-Gartland, Andrew; Evans, Tom; Dagnew, Alemnew F; Churchyard, Gavin; Cobelens, Frank; Behr, Marcel A; Hatherill, Mark; (2022) End-point definition and trial design to advance tuberculosis vaccine development. European respiratory review, 31 (164). p. 220044. ISSN 0905-9180 DOI: https://doi.org/10.1183/16000617.0044-2022

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