Achar, Jay; Seddon, James A; Knight, Gwenan M; Dodd, Peter J; Esmail, Hanif; Hughes, Jennifer; McQuaid, C Finn; (2023) Guiding pragmatic treatment choices for rifampicin-resistant tuberculosis in the absence of second-line drug susceptibility testing. The European Respiratory Journal, 62 (5). p. 2300969. ISSN 0903-1936 DOI: https://doi.org/10.1183/13993003.00969-2023

Carey, Megan E; Dyson, Zoe A; Argimón, Silvia; Cerdeira, Louise; Yeats, Corin; Aanensen, David; Mboowa, Gerald; Baker, Stephen; Tessema, Sofonias K; Smith, Anthony M; +2 more... Okeke, Iruka N; Holt, Kathryn E; (2023) Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization. Open forum infectious diseases, 10 (Suppl ). S38-S46. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofad044

Carey, Megan E; Dyson, Zoe A; Ingle, Danielle J; Amir, Afreenish; Aworh, Mabel K; Chattaway, Marie Anne; Chew, Ka Lip; Crump, John A; Feasey, Nicholas A; Howden, Benjamin P; +105 more... Keddy, Karen H; Maes, Mailis; Parry, Christopher M; Van Puyvelde, Sandra; Webb, Hattie E; Afolayan, Ayorinde Oluwatobiloba; Alexander, Anna P; Anandan, Shalini; Andrews, Jason R; Ashton, Philip M; Basnyat, Buddha; Bavdekar, Ashish; Bogoch, Isaac I; Clemens, John D; da Silva, Kesia Esther; De, Anuradha; de Ligt, Joep; Diaz Guevara, Paula Lucia; Dolecek, Christiane; Dutta, Shanta; Ehlers, Marthie M; Francois Watkins, Louise; Garrett, Denise O; Godbole, Gauri; Gordon, Melita A; Greenhill, Andrew R; Griffin, Chelsey; Gupta, Madhu; Hendriksen, Rene S; Heyderman, Robert S; Hooda, Yogesh; Hormazabal, Juan Carlos; Ikhimiukor, Odion O; Iqbal, Junaid; Jacob, Jobin John; Jenkins, Claire; Jinka, Dasaratha Ramaiah; John, Jacob; Kang, Gagandeep; Kanteh, Abdoulie; Kapil, Arti; Karkey, Abhilasha; Kariuki, Samuel; Kingsley, Robert A; Koshy, Roshine Mary; Lauer, AC; Levine, Myron M; Lingegowda, Ravikumar Kadahalli; Luby, Stephen P; Mackenzie, Grant Austin; Mashe, Tapfumanei; Msefula, Chisomo; Mutreja, Ankur; Nagaraj, Geetha; Nagaraj, Savitha; Nair, Satheesh; Naseri, Take K; Nimarota-Brown, Susana; Njamkepo, Elisabeth; Okeke, Iruka N; Perumal, Sulochana Putli Bai; Pollard, Andrew J; Pragasam, Agila Kumari; Qadri, Firdausi; Qamar, Farah N; Rahman, Sadia Isfat Ara; Rambocus, Savitra Devi; Rasko, David A; Ray, Pallab; Robins-Browne, Roy; Rongsen-Chandola, Temsunaro; Rutanga, Jean Pierre; Saha, Samir K; Saha, Senjuti; Saigal, Karnika; Sajib, Mohammad Saiful Islam; Seidman, Jessica C; Shakya, Jivan; Shamanna, Varun; Shastri, Jayanthi; Shrestha, Rajeev; Sia, Sonia; Sikorski, Michael J; Singh, Ashita; Smith, Anthony M; Tagg, Kaitlin A; Tamrakar, Dipesh; Tanmoy, Arif Mohammed; Thomas, Maria; Thomas, Mathew S; Thomsen, Robert; Thomson, Nicholas R; Tupua, Siaosi; Vaidya, Krista; Valcanis, Mary; Veeraraghavan, Balaji; Weill, François-Xavier; Wright, Jackie; Dougan, Gordon; Argimón, Silvia; Keane, Jacqueline A; Aanensen, David M; Baker, Stephen; Holt, Kathryn E; Global Typhoid Genomics Consortium Group Authorship; (2023) Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes. eLife, 12. e85867-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.85867

Dickson, Lindy; Le Roux, Sacha Roxanne; Mitrani, Leila; Hill, Jeremy; Jassat, Waasila; Cox, Helen; Mlisana, Koleka; Black, John; Loveday, Marian; Grant, Alison; +4 more... Kielmann, Karina; Ndjeka, Norbert; Moshabela, Mosa; Nicol, Mark; (2023) Organisation of care for people receiving drug-resistant tuberculosis treatment in South Africa: a mixed methods study. BMJ open, 13 (11). e067121-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2022-067121

Emes, Eve T; Waage, Jeff; Knight, Gwenan M; Naylor, Nichola R; (2023) AHHME: A model for estimating the holistic cost-effectiveness of antimicrobial resistance interventions in food animal production. One health, 17. 100629-. ISSN 2352-7714 DOI: https://doi.org/10.1016/j.onehlt.2023.100629

Foster-Nyarko, Ebenezer; Cottingham, Hugh; Wick, Ryan R; Judd, Louise M; Lam, Margaret MC; Wyres, Kelly L; Stanton, Thomas D; Tsang, Kara K; David, Sophia; Aanensen, David M; +2 more... Brisse, Sylvain; Holt, Kathryn E; (2023) Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae. Microbial genomics, 9 (2). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000936

Hetland, Marit AK; Hawkey, Jane; Bernhoff, Eva; Bakksjø, Ragna-Johanne; Kaspersen, Håkon; Rettedal, Siren I; Sundsfjord, Arnfinn; Holt, Kathryn E; Löhr, Iren H; (2023) Within-patient and global evolutionary dynamics of Klebsiella pneumoniae ST17. Microbial genomics, 9 (5). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.001005

Leclerc, Quentin; Clements, Alastair; Dunn, Helen; Hatcher, James; Lindsay, Jodi A; Grandjean, Louis; Knight, Gwenan M; (2023) Quantifying patient- and hospital-level antimicrobial resistance dynamics in Staphylococcus aureus from routinely collected data. Journal of medical microbiology, 72 (7). ISSN 0022-2615 DOI: https://doi.org/10.1099/jmm.0.001724

Maust, Brandon S; Petkov, Stefan; Herrera, Carolina; Feng, Colin; Brown, Bryan P; Lebina, Limakatso; Opoka, Daniel; Ssemata, Andrew; Pillay, Natasha; Serwanga, Jennifer; +12 more... Seatlholo, Portia; Namubiru, Patricia; Odoch, Geoffrey; Mugaba, Susan; Seiphetlo, Thabiso; Gray, Clive M; Kaleebu, Pontiano; Webb, Emily L; Martinson, Neil; Chiodi, Francesca; Fox, Julie; Jaspan, Heather B; (2023) Bacterial microbiome and host inflammatory gene expression in foreskin tissue. Heliyon, 9. e22145. ISSN 2405-8440 DOI: https://doi.org/10.1016/j.heliyon.2023.e22145

Okomo, Uduak A; Darboe, Saffiatou; Bah, Saikou Y; Ayorinde, Abigail; Jarju, Sheikh; Sesay, Abdul Karim; Kebbeh, Ngange; Gai, Abdou; Dibbasey, Tida; Grey-Johnson, Mary; +4 more... Le Doare, Kirsty; Holt, Kathryn E; Lawn, Joy E; Kampmann, Beate; (2023) Maternal colonization and early-onset neonatal bacterial sepsis in the Gambia, West Africa: a genomic analysis of vertical transmission. Clinical microbiology and infection, 29 (3). 386.e1-386.e9. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2022.10.012

Zhou, Kai; Xue, Chun-Xu; Xu, Tingting; Shen, Ping; Wei, Sha; Wyres, Kelly L; Lam, Margaret MC; Liu, Jinquan; Lin, Haoyun; Chen, Yunbo; +3 more... Holt, Kathryn E; BRICS Working Group; Xiao, Yonghong; (2023) A point mutation in recC associated with subclonal replacement of carbapenem-resistant Klebsiella pneumoniae ST11 in China. Nature communications, 14 (1). 2464-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-023-38061-z