Argimón, Silvia; David, Sophia; Underwood, Anthony; Abrudan, Monica; Wheeler, Nicole E; Kekre, Mihir; Abudahab, Khalil; Yeats, Corin A; Goater, Richard; Taylor, Ben; +11 more... Harste, Harry; Muddyman, Dawn; Feil, Edward J; Brisse, Sylvain; Holt, Kathryn; Donado-Godoy, Pilar; Ravikumar, KL; Okeke, Iruka N; Carlos, Celia; Aanensen, David M; NIHR Global Health Research Unit on Genomic Surveillance of Anti; NIHR Global Health Research Unit on Genomic Surveillance; (2021) Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 73 (Suppl_). S325-S335. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab784

Bhate, Ketaki; Lin, Liang-Yu; Barbieri, John S; Leyrat, Clémence; Hopkins, Susan; Stabler, Richard; Shallcross, Laura; Smeeth, Liam; Francis, Nick; Mathur, Rohini; +2 more... Langan, Sinéad M; Sinnott, Sarah-Jo; (2021) Is there an association between long-term antibiotics for acne and subsequent infection sequelae and antimicrobial resistance? A systematic review. British Journal of General Practice Open, 5 (3). BJGPO.2020.0181-BJGPO.2020.0181. DOI: https://doi.org/10.3399/BJGPO.2020.0181

Bhate, Ketaki; Lin, Liang-Yu; Barbieri, John; Leyrat, Clémence; Hopkins, Susan; Stabler, Richard; Shallcross, Laura; Smeeth, Liam; Francis, Nick A; Mathur, Rohini; +2 more... Langan, Sinéad M; Sinnott, Sarah-Jo; (2021) Is there an association between long-term antibiotics for acne and subsequent infection sequelae and antimicrobial resistance? A systematic review protocol. BMJ open, 10 (7). e033662-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2019-033662

Chimhini, Gwendoline; Olaru, Ioana Diana; Fitzgerald, Felicity; Chisenga, Mutsawashe; Ferreyra, Cecilia; Malou, Nada; Piton, Jeremie; Chimhuya, Simbarashe; Yeung, Shunmay; De, Surjo; +2 more... Mujuru, Hilda A; Kranzer, Katharina; (2021) Evaluation of a Novel Culture System for Rapid Pathogen Identification and Detection of Cephalosporin Resistance in Neonatal Gram-negative Sepsis at a Tertiary Referral Unit in Harare, Zimbabwe. The Pediatric infectious disease journal, 40 (9). pp. 785-791. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000003155

Chuengsatiansup, Komatra; Ajanakitti, Chutchon; Limsawart, Wirun; Chawraingern, Sittichoke; Urapeepathanapong, Thitima; Piyawong, Jutamas; (2021) Antimicrobials in Society (AMIS): When Anthropologists are Challenged by the 21st-Century World. [Video] https://doi.org/10.17037/PUBS.04661419 Full text not available from this repository.

Dixon, Justin; MacPherson, Eleanor Elizabeth; Nayiga, Susan; Manyau, Salome; Nabirye, Christine; Kayendeke, Miriam; Sanudi, Esnart; Nkaombe, Alex; Mareke, Portia; Sitole, Kenny; +10 more... de Lima Hutchison, Coll; Bradley, John; Yeung, Shunmay; Ferrand, Rashida Abbas; Lal, Sham; Roberts, Chrissy; Green, Edward; Denyer Willis, Laurie; Staedke, Sarah G; Chandler, Clare IR; (2021) Antibiotic stories: a mixed-methods, multi-country analysis of household antibiotic use in Malawi, Uganda and Zimbabwe. BMJ Global Health, 6 (11). e006920-e006920. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-006920

Dramowski, Angela; Ong'ayo, Gerald; Rehman, Andrea M; Whitelaw, Andrew; Labi, Appiah-Korang; Obeng-Nkrumah, Noah; Ndir, Awa; Magwenzi, Marcelyn T; Onyedibe, Kenneth; Wolkewitz, Martin; +4 more... de Kraker, Marlieke EA; Scott, J Anthony G; Aiken, Alexander M; MBIRA study collaborators; (2021) Mortality attributable to third-generation cephalosporin resistance in Gram-negative bloodstream infections in African hospitals: a multi-site retrospective study. JAC-Antimicrobial Resistance, 3 (1). dlaa130-. DOI: https://doi.org/10.1093/jacamr/dlaa130

Dyson, Zoe A; Holt, Kathryn E; (2021) Five Years of GenoTyphi: Updates to the Global Salmonella Typhi Genotyping Framework. JOURNAL OF INFECTIOUS DISEASES, 224 (12 Sup). S775-S780. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiab414

Ferdiana, Astri; Liverani, Marco; Khan, Mishal; Wulandari, Luh Putu Lila; Mashuri, Yusuf Ari; Batura, Neha; Wibawa, Tri; Yeung, Shunmay; Day, Richard; Jan, Stephen; +2 more... Wiseman, Virginia; Probandari, Ari; (2021) Community pharmacies, drug stores, and antibiotic dispensing in Indonesia: a qualitative study. BMC public health, 21 (1). 1800-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-021-11885-4

Fostervold, Aasmund; Hetland, Marit AK; Bakksjø, Ragna; Bernhoff, Eva; Holt, Kathryn E; Samuelsen, Ørjan; Simonsen, Gunnar Skov; Sundsfjord, Arnfinn; Wyres, Kelly L; Löhr, Iren Høyland; +1 more... Norwegian Study Group on Klebsiella pneumoniae; Norwegian Study Group on Klebsiella pneumoniae; (2021) A nationwide genomic study of clinical Klebsiella pneumoniae in Norway 2001-15: introduction and spread of ESBLs facilitated by clonal groups CG15 and CG307. The Journal of antimicrobial chemotherapy, 77 (3). pp. 665-674. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkab463

Hutchinson, Eleanor; Mundua, Sunday; Ochero, Lydia; Mbonye, Anthony; Clarke, Sian E; (2021) Life in the buffer zone: Social relations and surplus health workers in Uganda's medicines retail sector. Social Science and Medicine, 300. 113941-. DOI: https://doi.org/10.1016/j.socscimed.2021.113941

Isralls, Sharon; Baisley, Kathy; Ngam, Eric; Grant, Alison D; Millard, James; (2021) QT Interval Prolongation in People Treated With Bedaquiline for Drug-Resistant Tuberculosis Under Programmatic Conditions: A Retrospective Cohort Study. Open forum infectious diseases, 8 (8). ofab413-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofab413

Kariuki, Samuel; Dyson, Zoe A; Mbae, Cecilia; Ngetich, Ronald; Kavai, Susan M; Wairimu, Celestine; Anyona, Stephen; Gitau, Naomi; Onsare, Robert Sanaya; Ongandi, Beatrice; +5 more... Duchene, Sebastian; Ali, Mohamed; Clemens, John David; Holt, Kathryn E; Dougan, Gordon; (2021) Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya. eLife, 10. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.67852

Lekagul, Angkana; Tangcharoensathien, Viroj; Liverani, Marco; Mills, Anne; Rushton, Jonathan; Yeung, Shunmay; (2021) Understanding antibiotic use for pig farming in Thailand: a qualitative study. Antimicrobial resistance and infection control, 10 (1). 3-. ISSN 2047-2994 DOI: https://doi.org/10.1186/s13756-020-00865-9

Ludden, Catherine; Coll, Francesc; Gouliouris, Theodore; Restif, Olivier; Blane, Beth; Blackwell, Grace A; Kumar, Narender; Naydenova, Plamena; Crawley, Charles; Brown, Nicholas M; +2 more... Parkhill, Julian; Peacock, Sharon J; (2021) Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance study. The Lancet Microbe, 2 (9). e472-e480. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(21)00117-8

McCubbin, Kayley D; Ramatowski, John W; Buregyeya, Esther; Hutchinson, Eleanor; Kaur, Harparkash; Mbonye, Anthony K; Mateus, Ana LP; Clarke, Sian E; (2021) Unsafe "crossover-use" of chloramphenicol in Uganda: importance of a One Health approach in antimicrobial resistance policy and regulatory action. Journal of Antibiotics, 74 (6). pp. 417-420. ISSN 0021-8820 DOI: https://doi.org/10.1038/s41429-021-00416-3

Meiring, James E; Shakya, Mila; Khanam, Farhana; Voysey, Merryn; Phillips, Maile T; Tonks, Susan; Thindwa, Deus; Darton, Thomas C; Dongol, Sabina; Karkey, Abilasha; +14 more... Zaman, K; Baker, Stephen; Dolecek, Christiane; Dunstan, Sarah J; Dougan, Gordon; Holt, Kathryn E; Heyderman, Robert S; Qadri, Firdausi; Pitzer, Virginia E; Basnyat, Buddha; Gordon, Melita A; Clemens, John; Pollard, Andrew J; STRATAA Study Group; STRATAA Study Group; (2021) Burden of enteric fever at three urban sites in Africa and Asia: a multicentre population-based study. The Lancet. Global health, 9 (12). e1688-e1696. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(21)00370-3

Nayiga, Susan; Kayendeke, Miriam; Nabirye, Christine; Willis, Laurie Denyer; Staedke, Sarah G; Chandler, Clare IR; (2021) Antimicrobials in Society: A film about anthropological approaches to antibiotic use in East Africa. [Video] https://doi.org/10.17037/PUBS.04660795 Full text not available from this repository.

Olaru, Ioana D; Chisenga, Mutsawashe; Yeung, Shunmay; Chonzi, Prosper; Masunda, Kudzai PE; Ferrand, Rashida A; Kranzer, Katharina; (2021) Clinical and bacteriological outcomes in patients with urinary tract infections presenting to primary care in Harare, Zimbabwe: a cohort study. Wellcome Open Research, 6. 135-. DOI: https://doi.org/10.12688/wellcomeopenres.16789.2

Olaru, Ioana D; Ferrand, Rashida A; Chisenga, Mutsawashe; Yeung, Shunmay; Macrae, Bruce; Chonzi, Prosper; Stabler, Richard A; Hopkins, Heidi; Mabey, David; Masunda, Kudzai PE; +1 more... Kranzer, Katharina; (2021) Prevalence of ESBL-producing Escherichia coli in adults with and without HIV presenting with urinary tract infections to primary care clinics in Zimbabwe. JAC-antimicrobial resistance, 3 (2). dlab082-. ISSN 2632-1823 DOI: https://doi.org/10.1093/jacamr/dlab082

Olaru, Ioana D; Tacconelli, Evelina; Yeung, Shunmay; Ferrand, Rashida A; Stabler, Richard A; Hopkins, Heidi; Aiken, Alexander M; Kranzer, Katharina; (2021) The association between antimicrobial resistance and HIV infection: a systematic review and meta-analysis. Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases, 27 (6). pp. 846-853. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2021.03.026

Sringernyuang, Luechai; Poompruek, Panoopat; Whanpuch, Phakha; (2021) Antimicrobial Resistance, Urban Life in Thailand and Anthropological Research. [Video] https://doi.org/10.17037/PUBS.04661424 Full text not available from this repository.

Tompson, Alice C; Chandler, Clare IR; (2021) Addressing antibiotic use: insights from social science around the world. Project Report. London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04659562

Viehweger, Adrian; Blumenscheit, Christian; Lippmann, Norman; Wyres, Kelly L; Brandt, Christian; Hans, Jörg B; Hölzer, Martin; Irber, Luiz; Gatermann, Sören; Lübbert, Christoph; +3 more... Pletz, Mathias W; Holt, Kathryn E; König, Brigitte; (2021) Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae. Microbial genomics, 7 (12). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000741

Watts, Stephen C; Judd, Louise M; Carzino, Rosemary; Ranganathan, Sarath; Holt, Kathryn E; (2021) Genomic Diversity and Antimicrobial Resistance of Haemophilus Colonizing the Airways of Young Children with Cystic Fibrosis. mSystems, 6 (4). e0017821-. ISSN 2379-5077 DOI: https://doi.org/10.1128/mSystems.00178-21

Wick, Ryan R; Judd, Louise M; Wyres, Kelly L; Holt, Kathryn E; (2021) Recovery of small plasmid sequences via Oxford Nanopore sequencing. Microbial genomics, 7 (8). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000631 Item availability may be restricted.

Wulandari, Luh Putu Lila; Khan, Mishal; Liverani, Marco; Ferdiana, Astri; Mashuri, Yusuf Ari; Probandari, Ari; Wibawa, Tri; Batura, Neha; Schierhout, Gill; Kaldor, John; +8 more... Guy, Rebecca; Law, Matthew; Day, Richard; Hanefeld, Johanna; Parathon, Harry; Jan, Stephen; Yeung, Shunmay; Wiseman, Virginia; (2021) Prevalence and determinants of inappropriate antibiotic dispensing at private drug retail outlets in urban and rural areas of Indonesia: a mixed methods study. BMJ global health, 6 (8). e004993-e004993. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-004993