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Aiken, Alexander M; Mutuku, Irene M; Sabat, Artur J; Akkerboom, Viktoria; Mwangi, Jonah; Scott, J Anthony G; Morpeth, Susan C; Friedrich, Alexander W; Grundmann, Hajo; (2014) Carriage of Staphylococcus aureus in Thika Level 5 Hospital, Kenya: a cross-sectional study. Antimicrobial resistance and infection control, 3 (1). 22-. ISSN 2047-2994 DOI: https://doi.org/10.1186/2047-2994-3-22

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Alsford, Sam; (2014) Increased Trypanosoma brucei cathepsin-L activity inhibits human serum-mediated trypanolysis. Microbial cell (Graz, Austria), 1 (8). pp. 270-272. ISSN 2311-2638 DOI: https://doi.org/10.15698/mic2014.08.162

Alsford, Sam; Currier, Rachel B; Guerra-Assunção, José Afonso; Clark, Taane G; Horn, David; (2014) Cathepsin-L can resist lysis by human serum in Trypanosoma brucei brucei. PLoS pathogens, 10 (5). e1004130-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004130

Barrett, Michael P; Croft, Simon L; (2014) Emerging paradigms in anti-infective drug design. Parasitology, 141 (1). pp. 1-7. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182013001224

Bergval, Indra; Coll, Francesc; Schuitema, Anja; de Ronde, Hans; Mallard, Kim; Pain, Arnab; McNerney, Ruth; Clark, Taane G; Anthony, Richard M; (2014) A proportion of mutations fixed in the genomes of in vitro selected isogenic drug-resistant Mycobacterium tuberculosis mutants can be detected as minority variants in the parent culture. FEMS microbiology letters, 362 (2). pp. 1-7. ISSN 0378-1097 DOI: https://doi.org/10.1093/femsle/fnu037

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Burrell-Saward, Hollie; Rodgers, Jean; Bradley, Barbara; Croft, Simon L; Ward, Theresa H; (2014) A sensitive and reproducible in vivo imaging mouse model for evaluation of drugs against late-stage human African trypanosomiasis. The Journal of antimicrobial chemotherapy, 70 (2). pp. 510-517. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dku393

Campos, Mônica CO; Leon, Leonor L; Taylor, Martin C; Kelly, John M; (2014) Benznidazole-resistance in Trypanosoma cruzi: evidence that distinct mechanisms can act in concert. Molecular and biochemical parasitology, 193 (1). pp. 17-19. ISSN 0166-6851 DOI: https://doi.org/10.1016/j.molbiopara.2014.01.002

Chugh, Monika; Scheurer, Christian; Sax, Sibylle; Bilsland, Elizabeth; van Schalkwyk, Donelly A; Wicht, Kathryn J; Hofmann, Natalie; Sharma, Anil; Bashyam, Sridevi; Singh, Shivendra; +8 more... Oliver, Stephen G; Egan, Timothy J; Malhotra, Pawan; Sutherland, Colin J; Beck, Hans-Peter; Wittlin, Sergio; Spangenberg, Thomas; Ding, Xavier C; (2014) Identification and deconvolution of cross-resistance signals from antimalarial compounds using multidrug-resistant Plasmodium falciparum strains. Antimicrobial agents and chemotherapy, 59 (2). pp. 1110-1118. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.03265-14 Full text not available from this repository.

Falade, CO; Dada-Adegbola, HO; Ogunkunle, OO; Oguike, MC; Nash, O; Ademowo, OG; (2014) Evaluation of the comparative efficacy and safety of artemether-lumefantrine, artesunate-amodiaquine and artesunate-amodiaquine-chlorpheniramine (Artemoclo™) for the treatment of acute uncomplicated malaria in Nigerian children. Medical principles and practice, 23 (3). pp. 204-211. ISSN 1011-7571 DOI: https://doi.org/10.1159/000360578

Furuya-Kanamori, Luis; Robson, Jenny; Soares Magalhães, Ricardo J; Yakob, Laith; McKenzie, Samantha J; Paterson, David L; Riley, Thomas V; Clements, Archie CA; (2014) A population-based spatio-temporal analysis of Clostridium difficile infection in Queensland, Australia over a 10-year period. The Journal of infection, 69 (5). pp. 447-455. ISSN 0163-4453 DOI: https://doi.org/10.1016/j.jinf.2014.06.014 Full text not available from this repository.

Gadalla, Nahla B; Malmberg, Maja; Adam, Ishag; Oguike, Mary C; Beshir, Khalid; Elzaki, Salah-Eldin; Mukhtar, Izdihar; Gadalla, Amal A; Warhurst, David C; Ngasala, Billy; +4 more... Mårtensson, Andreas; El-Sayed, Badria B; Gil, J Pedro; Sutherland, Colin J; (2014) Alternatively spliced transcripts and novel pseudogenes of the Plasmodium falciparum resistance-associated locus pfcrt detected in East African malaria patients. The Journal of antimicrobial chemotherapy, 70 (1). pp. 116-123. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dku358

Gordon, NC; Price, JR; Cole, K; Everitt, R; Morgan, M; Finney, J; Kearns, AM; Pichon, B; Young, B; Wilson, DJ; +6 more... Llewelyn, MJ; Paul, J; Peto, TEA; Crook, DW; Walker, AS; Golubchik, T; (2014) Prediction of Staphylococcus aureus antimicrobial resistance by whole-genome sequencing. Journal of clinical microbiology, 52 (4). pp. 1182-1191. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.03117-13

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Hart, John D; Edwards, Tansy; Burr, Sarah E; Harding-Esch, Emma M; Takaoka, Kensuke; Holland, Martin J; Sillah, Ansumana; Mabey, David CW; Bailey, Robin L; (2014) Effect of azithromycin mass drug administration for trachoma on spleen rates in Gambian children. Tropical medicine & international health, 19 (2). pp. 207-211. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12234 Full text not available from this repository.

Henriques, Gisela; Hallett, Rachel L; Beshir, Khalid B; Gadalla, Nahla B; Johnson, Rachel E; Burrow, Rebekah; van Schalkwyk, Donelly A; Sawa, Patrick; Omar, Sabah A; Clark, Taane G; +2 more... Bousema, Teun; Sutherland, Colin J; (2014) Directional selection at the pfmdr1, pfcrt, pfubp1, and pfap2mu loci of Plasmodium falciparum in Kenyan children treated with ACT. The Journal of infectious diseases, 210 (12). pp. 2001-2008. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiu358

Hill-Cawthorne, Grant A; Hudson, Lyndsey O; El Ghany, Moataz Fouad Abd; Piepenburg, Olaf; Nair, Mridul; Dodgson, Andrew; Forrest, Matthew S; Clark, Taane G; Pain, Arnab; (2014) Recombinations in staphylococcal cassette chromosome mec elements compromise the molecular detection of methicillin resistance in Staphylococcus aureus. PloS one, 9 (6). e101419-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0101419

Iguchi, Atsushi; Nagaya, Yutaka; Pradel, Elizabeth; Ooka, Tadasuke; Ogura, Yoshitoshi; Katsura, Keisuke; Kurokawa, Ken; Oshima, Kenshiro; Hattori, Masahira; Parkhill, Julian; +6 more... Sebaihia, Mohamed; Coulthurst, Sarah J; Gotoh, Naomasa; Thomson, Nicholas R; Ewbank, Jonathan J; Hayashi, Tetsuya; (2014) Genome evolution and plasticity of Serratia marcescens, an important multidrug-resistant nosocomial pathogen. Genome biology and evolution, 6 (8). pp. 2096-2110. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evu160

Kavishe, Reginald A; Paulo, Petro; Kaaya, Robert D; Kalinga, Akili; van Zwetselaar, Marco; Chilongola, Jaffu; Roper, Cally; Alifrangis, Michael; (2014) Surveillance of artemether-lumefantrine associated Plasmodium falciparum multidrug resistance protein-1 gene polymorphisms in Tanzania. Malaria journal, 13 (1). 264-. ISSN 1475-2875 DOI: https://doi.org/10.1186/1475-2875-13-264

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Malaria Genomic Epidemiology Network; Malaria Genomic Epidemiology Network; (2014) Reappraisal of known malaria resistance loci in a large multicenter study. Nature genetics, 46 (11). pp. 1197-1204. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3107

Manasa, Justen; Lessells, Richard; Rossouw, Theresa; Naidu, Kevindra; Van Vuuren, Cloete; Goedhals, Dominique; van Zyl, Gert; Bester, Armand; Skingsley, Andrew; Stott, Katharine; +8 more... Danaviah, Siva; Chetty, Terusha; Singh, Lavanya; Moodley, Pravi; Iwuji, Collins; McGrath, Nuala; Seebregts, Christopher J; de Oliveira, Tulio; (2014) Southern African Treatment Resistance Network (SATuRN) RegaDB HIV drug resistance and clinical management database: supporting patient management, surveillance and research in southern Africa. Database, 2014. bat082-. ISSN 1758-0463 DOI: https://doi.org/10.1093/database/bat082

Mbogo, George W; Nankoberanyi, Sheila; Tukwasibwe, Stephen; Baliraine, Frederick N; Nsobya, Samuel L; Conrad, Melissa D; Arinaitwe, Emmanuel; Kamya, Moses; Tappero, Jordan; Staedke, Sarah G; +3 more... Dorsey, Grant; Greenhouse, Bryan; Rosenthal, Philip J; (2014) Temporal changes in prevalence of molecular markers mediating antimalarial drug resistance in a high malaria transmission setting in Uganda. The American journal of tropical medicine and hygiene, 91 (1). pp. 54-61. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.13-0647

Mbonye, Anthony K; Magnussen, Pascal; Chandler, Clare IR; Hansen, Kristian S; Lal, Sham; Cundill, Bonnie; Lynch, Caroline A; Clarke, Siân E; (2014) Introducing rapid diagnostic tests for malaria into drug shops in Uganda: design and implementation of a cluster randomized trial. Trials, 15 (1). 303-. ISSN 1745-6215 DOI: https://doi.org/10.1186/1745-6215-15-303

Miari, Victoria F; Wall, Gavin R; Clark, Duncan A; (2014) Evaluation of non-extracted genital swabs for real-time HSV PCR. Journal of medical virology, 87 (1). pp. 125-129. ISSN 0146-6615 DOI: https://doi.org/10.1002/jmv.23967 Full text not available from this repository.

Mobegi, Victor A; Duffy, Craig W; Amambua-Ngwa, Alfred; Loua, Kovana M; Laman, Eugene; Nwakanma, Davis C; MacInnis, Bronwyn; Aspeling-Jones, Harvey; Murray, Lee; Clark, Taane G; +2 more... Kwiatkowski, Dominic P; Conway, David J; (2014) Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity. Molecular biology and evolution, 31 (6). pp. 1490-1499. ISSN 0737-4038 DOI: https://doi.org/10.1093/molbev/msu106

Moule, Madeleine G; Hemsley, Claudia M; Seet, Qihui; Guerra-Assunção, José Afonso; Lim, Jiali; Sarkar-Tyson, Mitali; Clark, Taane G; Tan, Patrick BO; Titball, Richard W; Cuccui, Jon; +1 more... Wren, Brendan W; (2014) Genome-wide saturation mutagenesis of Burkholderia pseudomallei K96243 predicts essential genes and novel targets for antimicrobial development. mBio, 5 (1). e00926-e00913. ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00926-13

Ocholla, Harold; Preston, Mark D; Mipando, Mwapatsa; Jensen, Anja TR; Campino, Susana; MacInnis, Bronwyn; Alcock, Daniel; Terlouw, Anja; Zongo, Issaka; Oudraogo, Jean-Bosco; +13 more... Djimde, Abdoulaye A; Assefa, Samuel; Doumbo, Ogobara K; Borrmann, Steffen; Nzila, Alexis; Marsh, Kevin; Fairhurst, Rick M; Nosten, Francois; Anderson, Tim JC; Kwiatkowski, Dominic P; Craig, Alister; Clark, Taane G; Montgomery, Jacqui; (2014) Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates. The Journal of infectious diseases, 210 (12). pp. 1991-2000. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiu349

Okell, Lucy C; Cairns, Matthew; Griffin, Jamie T; Ferguson, Neil M; Tarning, Joel; Jagoe, George; Hugo, Pierre; Baker, Mark; D'Alessandro, Umberto; Bousema, Teun; +2 more... Ubben, David; Ghani, Azra C; (2014) Contrasting benefits of different artemisinin combination therapies as first-line malaria treatments using model-based cost-effectiveness analysis. Nature communications, 5 (1). 5606-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms6606

Palacios, Lucia; Rosado, Helena; Micol, Vicente; Rosato, Adriana E; Bernal, Patricia; Arroyo, Raquel; Grounds, Helen; Anderson, James C; Stabler, Richard A; Taylor, Peter W; (2014) Staphylococcal phenotypes induced by naturally occurring and synthetic membrane-interactive polyphenolic β-lactam resistance modifiers. PloS one, 9 (4). e93830-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0093830

Perdigão, João; Silva, Hugo; Machado, Diana; Macedo, Rita; Maltez, Fernando; Silva, Carla; Jordao, Luisa; Couto, Isabel; Mallard, Kim; Coll, Francesc; +6 more... Hill-Cawthorne, Grant A; McNerney, Ruth; Pain, Arnab; Clark, Taane G; Viveiros, Miguel; Portugal, Isabel; (2014) Unraveling Mycobacterium tuberculosis genomic diversity and evolution in Lisbon, Portugal, a highly drug resistant setting. BMC genomics, 15 (1). 991-. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-15-991

Pillay, Sureshnee; Bland, Ruth M; Lessells, Richard J; Manasa, Justen; de Oliveira, Tulio; Danaviah, Sivapragashini; (2014) Drug resistance in children at virological failure in a rural KwaZulu-Natal, South Africa, cohort. AIDS research and therapy, 11 (1). 3-. ISSN 1742-6405 DOI: https://doi.org/10.1186/1742-6405-11-3

Roper, Cally; Alifrangis, Michael; Ariey, Frederic; Talisuna, Ambrose; Menard, Didier; Mercereau-Puijalon, Odile; Ringwald, Pascal; (2014) Molecular surveillance for artemisinin resistance in Africa. The Lancet infectious diseases, 14 (8). pp. 668-670. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(14)70826-6 Full text not available from this repository.

Shrestha, Sourya; Knight, Gwenan M; Fofana, Mariam; Cohen, Ted; White, Richard G; Cobelens, Frank; Dowdy, David W; (2014) Drivers and trajectories of resistance to new first-line drug regimens for tuberculosis. Open forum infectious diseases, 1 (2). ofu073-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofu073

Takala-Harrison, Shannon; Jacob, Christopher G; Arze, Cesar; Cummings, Michael P; Silva, Joana C; Dondorp, Arjen M; Fukuda, Mark M; Hien, Tran Tinh; Mayxay, Mayfong; Noedl, Harald; +35 more... Nosten, Francois; Kyaw, Myat P; Nhien, Nguyen Thanh Thuy; Imwong, Mallika; Bethell, Delia; Se, Youry; Lon, Chanthap; Tyner, Stuart D; Saunders, David L; Ariey, Frederic; Mercereau-Puijalon, Odile; Menard, Didier; Newton, Paul N; Khanthavong, Maniphone; Hongvanthong, Bouasy; Starzengruber, Peter; Fuehrer, Hans-Peter; Swoboda, Paul; Khan, Wasif A; Phyo, Aung Pyae; Nyunt, Myaing M; Nyunt, Myat H; Brown, Tyler S; Adams, Matthew; Pepin, Christopher S; Bailey, Jason; Tan, John C; Ferdig, Michael T; Clark, Taane G; Miotto, Olivo; MacInnis, Bronwyn; Kwiatkowski, Dominic P; White, Nicholas J; Ringwald, Pascal; Plowe, Christopher V; (2014) Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia. The Journal of infectious diseases, 211 (5). pp. 670-679. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiu491 Full text not available from this repository.

Taylor, Steve M; Parobek, Christian M; DeConti, Derrick K; Kayentao, Kassoum; Coulibaly, Sheick Oumar; Greenwood, Brian M; Tagbor, Harry; Williams, John; Bojang, Kalifa; Njie, Fanta; +16 more... Desai, Meghna; Kariuki, Simon; Gutman, Julie; Mathanga, Don P; Mårtensson, Andreas; Ngasala, Billy; Conrad, Melissa D; Rosenthal, Philip J; Tshefu, Antoinette K; Moormann, Ann M; Vulule, John M; Doumbo, Ogobara K; Ter Kuile, Feiko O; Meshnick, Steven R; Bailey, Jeffrey A; Juliano, Jonathan J; (2014) Absence of putative artemisinin resistance mutations among Plasmodium falciparum in Sub-Saharan Africa: a molecular epidemiologic study. The Journal of infectious diseases, 211 (5). pp. 680-688. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiu467 Full text not available from this repository.

Tewari, Rita; Patzewitz, Eva-Maria; Poulin, Benoit; Stewart, Lindsay; Baker, David A; (2014) Development of a transgenic Plasmodium berghei line (Pb pfpkg) expressing the P. falciparum cGMP-dependent protein kinase, a novel antimalarial drug target. PloS one, 9 (5). e96923-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0096923

Venkatesan, Meera; Gadalla, Nahla B; Stepniewska, Kasia; Dahal, Prabin; Nsanzabana, Christian; Moriera, Clarissa; Price, Ric N; Mårtensson, Andreas; Rosenthal, Philip J; Dorsey, Grant; +53 more... Sutherland, Colin J; Guérin, Philippe; Davis, Timothy ME; Ménard, Didier; Adam, Ishag; Ademowo, George; Arze, Cesar; Baliraine, Frederick N; Berens-Riha, Nicole; Björkman, Anders; Borrmann, Steffen; Checchi, Francesco; Desai, Meghna; Dhorda, Mehul; Djimdé, Abdoulaye A; El-Sayed, Badria B; Eshetu, Teferi; Eyase, Frederick; Falade, Catherine; Faucher, Jean-François; Fröberg, Gabrielle; Grivoyannis, Anastasia; Hamour, Sally; Houzé, Sandrine; Johnson, Jacob; Kamugisha, Erasmus; Kariuki, Simon; Kiechel, Jean-René; Kironde, Fred; Kofoed, Poul-Erik; LeBras, Jacques; Malmberg, Maja; Mwai, Leah; Ngasala, Billy; Nosten, Francois; Nsobya, Samuel L; Nzila, Alexis; Oguike, Mary; Otienoburu, Sabina Dahlström; Ogutu, Bernhards; Ouédraogo, Jean-Bosco; Piola, Patrice; Rombo, Lars; Schramm, Birgit; Somé, A Fabrice; Thwing, Julie; Ursing, Johan; Wong, Rina PM; Zeynudin, Ahmed; Zongo, Issaka; Plowe, Christopher V; Sibley, Carol Hopkins; Asaq Molecular Marker Study Group; (2014) Polymorphisms in Plasmodium falciparum chloroquine resistance transporter and multidrug resistance 1 genes: parasite risk factors that affect treatment outcomes for P. falciparum malaria after artemether-lumefantrine and artesunate-amodiaquine. The American journal of tropical medicine and hygiene, 91 (4). pp. 833-843. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.14-0031

Yakob, Laith; Riley, Thomas V; Paterson, David L; Marquess, John; Clements, Archie Ca; (2014) Assessing control bundles for Clostridium difficile: a review and mathematical model. Emerging Microbes and Infections, 3 (6). e43-. ISSN 2222-1751) DOI: https://doi.org/10.1038/emi.2014.43

Yip, Winnie; Powell-Jackson, Timothy; Chen, Wen; Hu, Min; Fe, Eduardo; Hu, Mu; Jian, Weiyan; Lu, Ming; Han, Wei; Hsiao, William C; (2014) Capitation combined with pay-for-performance improves antibiotic prescribing practices in rural China. Health affairs (Project Hope), 33 (3). pp. 502-510. ISSN 0278-2715 DOI: https://doi.org/10.1377/hlthaff.2013.0702 Full text not available from this repository.