Boinett, Christine J; Cain, Amy K; Hawkey, Jane; Do Hoang, Nhu Tran; Khanh, Nhu Nguyen Thi; Thanh, Duy Pham; Dordel, Janina; Campbell, James I; Lan, Nguyen Phu Huong; Mayho, Matthew; +8 more... Langridge, Gemma C; Hadfield, James; Chau, Nguyen Van Vinh; Thwaites, Guy E; Parkhill, Julian; Thomson, Nicholas R; Holt, Kathryn E; Baker, Stephen; (2019) Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. Microbial genomics. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000246

Chung The, H; Rabaa, MA; Thanh, DP; Ruekit, S; Wangchuk, S; Dorji, T; Tshering, KP; Nguyen, TN; Vinh, PV; Thanh, TH; +9 more... Minh, CN; Turner, P; Sar, P; Thwaites, G; Holt, KE; Thomson, NR; Bodhidatta, L; Jeffries Mason, C; Baker, S; (2015) Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. Microbial genomics, 1 (6). e000042. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000042 Full text not available from this repository.

Cornick, JE; Chaguza, C; Harris, SR; Yalcin, F; Senghore, M; Kiran, AM; Govindpershad, S; Ousmane, S; Plessis, MD; Pluschke, G; +12 more... Ebruke, C; McGee, L; Sigaùque, B; Collard, JM; Antonio, M; von Gottberg, A; French, N; Klugman, KP; Heyderman, RS; Bentley, SD; Everett, DB; PAGe Consortium; (2015) Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae. Microbial genomics, 1 (2). e000027. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000027

Follador, R; Heinz, E; Wyres, KL; Ellington, MJ; Kowarik, M; Holt, KE; Thomson, NR; (2016) The diversity of Klebsiella pneumoniae surface polysaccharides. Microbial genomics, 2 (8). e000073. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000073

Hawkey, Jane; Le Hello, Simon; Doublet, Benoît; Granier, Sophie A; Hendriksen, Rene S; Fricke, W Florian; Ceyssens, Pieter-Jan; Gomart, Camille; Billman-Jacobe, Helen; Holt, Kathryn E; +1 more... Weill, François-Xavier; (2019) Global phylogenomics of multidrug-resistant Salmonella enterica serotype Kentucky ST198. Microbial genomics. DOI: https://doi.org/10.1099/mgen.0.000269

Jamrozy, DM; Harris, SR; Mohamed, N; Peacock, SJ; Tan, CY; Parkhill, J; Anderson, AS; Holden, MT; (2016) Pan-genomic perspective on the evolution of the Staphylococcus aureus USA300 epidemic. Microbial genomics, 2 (5). e000058. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000058

Judge, K; Hunt, M; Reuter, S; Tracey, A; Quail, MA; Parkhill, J; Peacock, SJ; (2016) Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology. Microbial genomics, 2 (9). e000085. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000085

Knight, G; Lambert, H; Feil, E; Holmes, M; Lindsay, J; (2018) The importance of cross-disciplinary research to combat antimicrobial resistance: introducing a new pop-up journal, X-AMR. Microbial genomics. ISSN 2057-5858 DOI: https://doi.org/10.1099/mic.0.000684

Ludden, C; Reuter, S; Judge, K; Gouliouris, T; Blane, B; Coll, F; Naydenova, P; Hunt, M; Tracey, A; Hopkins, KL; +4 more... Brown, NM; Woodford, N; Parkhill, J; Peacock, SJ; (2017) Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing. Microbial genomics, 3 (7). e000114. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000114

Reuter, S; Corander, J; de Been, M; Harris, S; Cheng, L; Hall, M; Thomson, NR; McNally, A; (2015) Directional gene flow and ecological separation in Yersinia enterocolitica. Microbial genomics, 1 (3). e000030. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000030 Full text not available from this repository.

Wailan, Alexander M; Coll, Francesc; Heinz, Eva; Tonkin-Hill, Gerry; Corander, Jukka; Feasey, Nicholas A; Thomson, Nicholas R; (2019) rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree. Microbial genomics, 5 (4). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000264

Wyres, KL; Wick, RR; Gorrie, C; Jenney, A; Follador, R; Thomson, NR; Holt, KE; (2016) Identification of Klebsiella capsule synthesis loci from whole genome data. Microbial genomics, 2 (12). e000102. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000102