Hadfield, J; Harris, SR; Seth-Smith, HMB; Parmar, S; Andersson, P; Giffard, PM; Schachter, J; Moncada, J; Ellison, L; Vaulet, MLG; +28 more... Fermepin, MR; Radebe, F; Mendoza, S; Ouburg, S; Morré, SA; Sachse, K; Puolakkainen, M; Korhonen, SJ; Sonnex, C; Wiggins, R; Jalal, H; Brunelli, T; Casprini, P; Pitt, R; Ison, C; Savicheva, A; Shipitsyna, E; Hadad, R; Kari, L; Burton, MJ; Mabey, D; Solomon, AW; Lewis, D; Marsh, P; Unemo, M; Clarke, IN; Parkhill, J; Thomson, NR; (2017) Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.212647.116

Kallonen, T; Brodrick, HJ; Harris, SR; Corander, J; Brown, NM; Martin, V; Peacock, SJ; Parkhill, J; (2017) Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.216606.116

Miles, Alistair; Iqbal, Zamin; Vauterin, Paul; Pearson, Richard; Campino, Susana; Theron, Michel; Gould, Kelda; Mead, Daniel; Drury, Eleanor; O'Brien, John; +12 more... Ruano Rubio, Valentin; MacInnis, Bronwyn; Mwangi, Jonathan; Samarakoon, Upeka; Ranford-Cartwright, Lisa; Ferdig, Michael; Hayton, Karen; Su, Xin-Zhuan; Wellems, Thomas; Rayner, Julian; McVean, Gil; Kwiatkowski, Dominic; (2016) Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum. Genome research, 26 (9). pp. 1288-1299. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.203711.115

Moradigaravand, D; Boinett, CJ; Martin, V; Peacock, SJ; Parkhill, J; (2016) Recent independent emergence of multiple multidrug-resistant Serratia marcescens clones within the United Kingdom and Ireland. Genome research, 26 (8). pp. 1101-9. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.205245.116

Raven, KE; Reuter, S; Reynolds, R; Brodrick, HJ; Russell, JE; Török, ME; Parkhill, J; Peacock, SJ; (2016) A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland. Genome research, 26 (10). pp. 1388-1396. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.204024.116

Reuter, S; Török, ME; Holden, MT; Reynolds, R; Raven, KE; Blane, B; Donker, T; Bentley, SD; Aanensen, DM; Grundmann, H; +4 more... Feil, EJ; Spratt, BG; Parkhill, J; Peacock, SJ; (2015) Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.196709.115 Full text not available from this repository.

Dryden, NH; Broome, LR; Dudbridge, F; Johnson, N; Orr, N; Schoenfelder, S; Nagano, T; Andrews, S; Wingett, S; Kozarewa, I; +10 more... Assiotis, I; Fenwick, K; Maguire, SL; Campbell, J; Natrajan, R; Lambros, M; Perrakis, E; Ashworth, A; Fraser, P; Fletcher, O; (2014) Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.175034.114 Full text not available from this repository.

Nandi, T; Holden, M; Didelot, X; Mehershahi, K; Boddey, JA; Beacham, I; Peak, I; Harting, J; Baybayan, P; Guo, Y; +16 more... Wang, S; Lee, CH; Sim, B; Essex-Lopresti, A; Sarkar-Tyson, M; Nelson, M; Smither, S; Ong, C; Aw, LT; Chua, HH; Michell, S; Studholme, DJ; Titball, RW; Chen, SL; Parkhill, J; Tan, P; (2014) Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory and epigenetic profiles. Genome research. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.177543.114 Full text not available from this repository.

Seth-Smith, HM; Harris, SR; Skilton, RJ; Radebe, FM; Golparian, D; Shipitsyna, E; Duy, PT; Scott, P; Cutcliffe, LT; O'Neill, C; +11 more... Parmar, S; Pitt, R; Baker, S; Ison, CA; Marsh, P; Jalal, H; Lewis, DA; Unemo, M; Clarke, IN; Parkhill, J; Thomson, NR; (2013) Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture. Genome research, 23 (5). pp. 855-66. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.150037.112 Full text not available from this repository.

Alsford, S; Turner, DJ; Obado, SO; Sanchez-Flores, A; Glover, L; Berriman, M; Hertz-Fowler, C; Horn, D; (2011) High throughput phenotyping using parallel sequencing of RNA interference targets in the African trypanosome. Genome research, 21 (6). pp. 915-24. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.115089.110

Downing, T; Imamura, H; Decuypere, S; Clark, TG; Coombs, GH; Cotton, JA; Hilley, JD; de Doncker, S; Maes, I; Mottram, JC; +10 more... Quail, MA; Rijal, S; Sanders, M; Schonian, G; Stark, O; Sundar, S; Vanaerschot, M; Hertz-Fowler, C; Dujardin, JC; Berriman, M; (2011) Whole genome sequencing of multiple Leishmania donovani clinical isolates provides insights into population structure and mechanisms of drug resistance. Genome research, 21 (12). pp. 2143-2156. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.123430.111 Full text not available from this repository.

Norman, PJ; Abi-Rached, L; Gendzekhadze, K; Hammond, JA; Moesta, AK; Sharma, D; Graef, T; McQueen, KL; Guethlein, LA; Carrington, CVF; +24 more... Chandanayingyong, D; Chang, YH; Crespi, C; Saruhan-Direskeneli, G; Hameed, K; Kamkamidze, G; Koram, KA; Layrisse, Z; Matamoros, N; Mila, J; Park, MH; Pitchappan, RM; Ramdath, DD; Shiau, MY; Stephens, HAF; Struik, S; Tyan, D; Verity, DH; Vaughan, RW; Davis, RW; Fraser, PA; Riley, EM; Ronaghi, M; Parham, P; (2009) Meiotic recombination generates rich diversity in NK cell receptor genes, alleles, and haplotypes. Genome research, 19 (5). pp. 757-769. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.085738.108 Full text not available from this repository.

Pittman, AM; Naranjo, S; Webb, E; Broderick, P; Lips, EH; van Wezel, T; Morreau, H; Sullivan, K; Fielding, S; Twiss, P; +5 more... Vijayakrishnan, J; Casares, F; Qureshi, M; Gómez-Skarmeta, JL; Houlston, RS; (2009) The colorectal cancer risk at 18q21 is caused by a novel variant altering SMAD7 expression. Genome research, 19 (6). pp. 987-93. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.092668.109 Full text not available from this repository.

Teo, YY; Fry, AE; Bhattacharya, K; Small, KS; Kwiatkowski, DP; Clark, TG; (2009) Genome-wide comparisons of variation in linkage disequilibrium. Genome research, 19 (10). pp. 1849-60. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.092189.109 Full text not available from this repository.

Sebaihia, M; Peck, MW; Minton, NP; Thomson, NR; Holden, MT; Mitchell, WJ; Carter, AT; Bentley, SD; Mason, DR; Crossman, L; +24 more... Paul, CJ; Ivens, A; Wells-Bennik, MH; Davis, IJ; Cerdeño-Tárraga, AM; Churcher, C; Quail, MA; Chillingworth, T; Feltwell, T; Fraser, A; Goodhead, I; Hance, Z; Jagels, K; Larke, N; Maddison, M; Moule, S; Mungall, K; Norbertczak, H; Rabbinowitsch, E; Sanders, M; Simmonds, M; White, B; Whithead, S; Parkhill, J; (2007) Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes. Genome research, 17 (7). pp. 1082-92. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.6282807 Full text not available from this repository.

Rudd, MF; Webb, EL; Matakidou, A; Sellick, GS; Williams, RD; Bridle, H; Eisen, T; Houlston, RS; GELCAPS Consortium; (2006) Variants in the GH-IGF axis confer susceptibility to lung cancer. Genome research, 16 (6). pp. 693-701. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.5120106 Full text not available from this repository.

Alharbi, KK; Aldahmesh, MA; Spanakis, E; Haddad, L; Whittall, RA; Chen, XH; Rassoulian, H; Smith, MJ; Sillibourne, J; Ball, NJ; +12 more... Graham, NJ; Briggs, PJ; Simpson, IA; Phillips, DI; Lawlor, DA; Ye, S; Humphries, SE; Cooper, C; Smith, GD; Ebrahim, S; Eccles, DM; Day, IN; (2005) Mutation scanning by meltMADGE: validations using BRCA1 and LDLR, and demonstration of the potential to identify severe, moderate, silent, rare, and paucimorphic mutations in the general population. Genome research, 15 (7). pp. 967-77. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.3313405 Full text not available from this repository.

Obado, SO; Taylor, MC; Wilkinson, SR; Bromley, EV; Kelly, JM; (2005) Functional mapping of a trypanosome centromere by chromosome fragmentation identifies a 16-kb GC-rich transcriptional "strand-switch" domain as a major feature. Genome research, 15 (1). pp. 36-43. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.2895105

Hinchliffe, SJ; Isherwood, KE; Stabler, RA; Prentice, MB; Rakin, A; Nichols, RA; Oyston, PC; Hinds, J; Titball, RW; Wren, BW; (2003) Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis. Genome research, 13 (9). pp. 2018-29. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.1507303 Full text not available from this repository.

Dorrell, N; Mangan, JA; Laing, KG; Hinds, J; Linton, D; Al-Ghusein, H; Barrell, BG; Parkhill, J; Stoker, NG; Karlyshev, AV; +2 more... Butcher, PD; Wren, BW; (2001) Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity. Genome research, 11 (10). pp. 1706-15. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.185801 Full text not available from this repository.

Loughlin, K; (2001) Smoking in British popular culture, 1800-2000. Genome research, 86 (7). pp. 251-252. ISSN 1088-9051 https://researchonline.lshtm.ac.uk/id/eprint/17298 Full text not available from this repository.