Abaasa, Andrew; Nash, Stephen; Mayanja, Yunia; Price, Matt A; Fast, Patricia E; Kaleebu, Pontiano; Todd, Jim; (2020) Comparison of HIV Risk Behaviors Between Clinical Trials and Observational Cohorts in Uganda. AIDS and behavior, 24 (10). pp. 2872-2884. ISSN 1090-7165 DOI: https://doi.org/10.1007/s10461-020-02838-w

Abaasa, Andrew; Todd, Jim; Nash, Stephen; Mayanja, Yunia; Kaleebu, Pontiano; Fast, Patricia E; Price, Matt; (2020) Comparison of retention in observational cohorts and nested simulated HIV vaccine efficacy trials in the key populations in Uganda. BMC medical research methodology, 20 (1). 32-. ISSN 1471-2288 DOI: https://doi.org/10.1186/s12874-020-00920-4

Aceng, Jane Ruth; Ario, Alex R; Muruta, Allan N; Makumbi, Issa; Nanyunja, Miriam; Komakech, Innocent; Bakainaga, Andrew N; Talisuna, Ambrose O; Mwesigye, Collins; Mpairwe, Allan M; +117 more... Tusiime, Jayne B; Lali, William Z; Katushabe, Edson; Ocom, Felix; Kaggwa, Mugagga; Bongomin, Bodo; Kasule, Hafisa; Mwoga, Joseph N; Sensasi, Benjamin; Mwebembezi, Edmund; Katureebe, Charles; Sentumbwe, Olive; Nalwadda, Rita; Mbaka, Paul; Fatunmbi, Bayo S; Nakiire, Lydia; Lamorde, Mohammed; Walwema, Richard; Kambugu, Andrew; Nanyondo, Judith; Okware, Solome; Ahabwe, Peter B; Nabukenya, Immaculate; Kayiwa, Joshua; Wetaka, Milton M; Kyazze, Simon; Kwesiga, Benon; Kadobera, Daniel; Bulage, Lilian; Nanziri, Carol; Monje, Fred; Aliddeki, Dativa M; Ntono, Vivian; Gonahasa, Doreen; Nabatanzi, Sandra; Nsereko, Godfrey; Nakinsige, Anne; Mabumba, Eldard; Lubwama, Bernard; Sekamatte, Musa; Kibuule, Michael; Muwanguzi, David; Amone, Jackson; Upenytho, George D; Driwale, Alfred; Seru, Morries; Sebisubi, Fred; Akello, Harriet; Kabanda, Richard; Mutengeki, David K; Bakyaita, Tabley; Serwanjja, Vivian N; Okwi, Richard; Okiria, Jude; Ainebyoona, Emmanuel; Opar, Bernard T; Mimbe, Derrick; Kyabaggu, Denis; Ayebazibwe, Chrisostom; Sentumbwe, Juliet; Mwanja, Moses; Ndumu, Deo B; Bwogi, Josephine; Balinandi, Stephen; Nyakarahuka, Luke; Tumusiime, Alex; Kyondo, Jackson; Mulei, Sophia; Lutwama, Julius; Kaleebu, Pontiano; Kagirita, Atek; Nabadda, Susan; Oumo, Peter; Lukwago, Robinah; Kasozi, Julius; Masylukov, Oleh; Kyobe, Henry Bosa; Berdaga, Viorica; Lwanga, Miriam; Opio, Joe C; Matseketse, David; Eyul, James; Oteba, Martin O; Bukirwa, Hasifa; Bulya, Nulu; Masiira, Ben; Kihembo, Christine; Ohuabunwo, Chima; Antara, Simon N; Owembabazi, Wilberforce; Okot, Paul B; Okwera, Josephine; Amoros, Isabelle; Kajja, Victoria; Mukunda, Basnet S; Sorela, Isabel; Adams, Gregory; Shoemaker, Trevor; Klena, John D; Taboy, Celine H; Ward, Sarah E; Merrill, Rebecca D; Carter, Rosalind J; Harris, Julie R; Banage, Flora; Nsibambi, Thomas; Ojwang, Joseph; Kasule, Juliet N; Stowell, Dan F; Brown, Vance R; Zhu, Bao-Ping; Homsy, Jaco; Nelson, Lisa J; Tusiime, Patrick K; Olaro, Charles; Mwebesa, Henry G; Woldemariam, Yonas Tegegn; (2020) Uganda's experience in Ebola virus disease outbreak preparedness, 2018-2019. Globalization and health, 16 (1). 24-. ISSN 1744-8603 DOI: https://doi.org/10.1186/s12992-020-00548-5

Adedeji, Eunice Oluwatobiloba; Ogunlana, Olubanke Olujoke; Fatumo, Segun; Beder, Thomas; Ajamma, Yvonne; Koenig, Rainer; Adebiyi, Ezekiel; (2020) Anopheles metabolic proteins in malaria transmission, prevention and control: a review. Parasites and Vectors, 13 (1). 465-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-020-04342-5

Asio, Juliet; Watera, Christine; Namuwenge, Norah; Kirungi, Wilford; Musinguzi, Joshua; Mugagga, Kaggwa; Busobozi, Ronald; Tusiime, Bridget Jolly; Lutalo, Tom; Mbidde, Edward Katongole; +2 more... Kaleebu, Pontiano; Uganda HIV Drug Resistance Technical Working Group; (2020) Population-based monitoring of HIV drug resistance early warning indicators in Uganda: A nationally representative survey following revised WHO recommendations. PloS one, 15 (4). e0230451-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0230451

Bbosa, Nicholas; Ssemwanga, Deogratius; Kaleebu, Pontiano; (2020) Short Communication: Choosing the Right Program for the Identification of HIV-1 Transmission Networks from Nucleotide Sequences Sampled from Different Populations. AIDS research and human retroviruses, 36 (11). pp. 948-951. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2020.0033

Bbosa, Nicholas; Ssemwanga, Deogratius; Ssekagiri, Alfred; Xi, Xiaoyue; Mayanja, Yunia; Bahemuka, Ubaldo; Seeley, Janet; Pillay, Deenan; Abeler-Dörner, Lucie; Golubchik, Tanya; +3 more... Fraser, Christophe; Kaleebu, Pontiano; Ratmann, Oliver; (2020) Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda. Viruses, 12 (3). p. 331. DOI: https://doi.org/10.3390/v12030331

Birungi, J; Cui, Z; Okoboi, S; Kapaata, A; Munderi, P; Mukajjanga, C; Nanfuka, M; Nyonyintono, MS; Kim, J; Zhu, J; +2 more... Kaleebu, P; Moore, DM; (2020) Lack of effectiveness of adherence counselling in reversing virological failure among patients on long-term antiretroviral therapy in rural Uganda. HIV medicine, 21 (1). pp. 21-29. ISSN 1464-2662 DOI: https://doi.org/10.1111/hiv.12790

Bugembe, Daniel Lule; Ekii, Andrew Obuku; Ndembi, Nicaise; Serwanga, Jennifer; Kaleebu, Pontiano; Pala, Pietro; (2020) Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort. BMC infectious diseases, 20 (1). 172-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-020-4876-4

Bugembe, Daniel Lule; Kayiwa, John; Phan, My VT; Tushabe, Phiona; Balinandi, Stephen; Dhaala, Beatrice; Lexow, Jonas; Mwebesa, Henry; Aceng, Jane; Kyobe, Henry; +4 more... Ssemwanga, Deogratius; Lutwama, Julius; Kaleebu, Pontiano; Cotten, Matthew; (2020) Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda. EMERGING INFECTIOUS DISEASES, 26 (10). pp. 2411-2415. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2610.202575

Ezenwa, Chisom; Soremekun, Opeyemi S; Nashiru, Oyekanmi; Fatumo, Segun; (2020) Identification of differentially expressed genes present in the whole blood of Pulmonary Arterial Hypertension patients and control patients: An integrated bioinformatics approach. Informatics in medicine unlocked, 20. p. 100380. ISSN 2352-9148 DOI: https://doi.org/10.1016/j.imu.2020.100380

Fatumo, Segun; (2020) The opportunity in African genome resource for precision medicine. EBioMedicine, 54. 102721-. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2020.102721

Fatumo, Segun; Ebenezer, ThankGod E; Ekenna, Chinwe; Isewon, Itunuoluwa; Ahmad, Umar; Adetunji, Charles; Oladipo, Elijah Kolawole; Adebiyi, Marion; Adebiyi, Ezekiel; Nashiru, Oyekanmi; +1 more... Nigerian Bioinformatics and Genomics Network; (2020) The Nigerian Bioinformatics and Genomics Network (NBGN): a collaborative platform to advance bioinformatics and genomics in Nigeria. Global Health, Epidemiology and Genomics, 5. e3-. ISSN 2054-4200 DOI: https://doi.org/10.1017/gheg.2020.3

Grant, Heather E; Hodcroft, Emma B; Ssemwanga, Deogratius; Kitayimbwa, John M; Yebra, Gonzalo; Esquivel Gomez, Luis Roger; Frampton, Dan; Gall, Astrid; Kellam, Paul; de Oliveira, Tulio; +12 more... Bbosa, Nicholas; Nsubuga, Rebecca N; Kibengo, Freddie; Kwan, Tsz Ho; Lycett, Samantha; Kao, Rowland; Robertson, David L; Ratmann, Oliver; Fraser, Christophe; Pillay, Deenan; Kaleebu, Pontiano; Leigh Brown, Andrew J; (2020) Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Virus evolution, 6 (1). veaa004-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/veaa004

Inzaule, Seth C; Jordan, Michael R; Bello, George; Wadonda-Kabondo, Nellie; Mounerou, Salou; Mbulli, Innocent A; Akanmu, Sulaimon A; Vubil, Adolfo; Hunt, Gillian; Kaleebu, Pontiano; +8 more... Mthethwa-Hleza, Simangele; Dzangare, Janet; Njukeng, Patrick; Penazzato, Martina; Rinke de Wit, Tobias F; Eshleman, Susan H; Bertagnolio, Silvia; Infant HIV Drug Resistance Survey Team; (2020) High levels of resistance to nucleoside/nucleotide reverse transcriptase inhibitors in newly diagnosed antiretroviral treatment-naive children in sub-Saharan Africa. AIDS (London, England), 34 (10). pp. 1567-1570. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000002580

Kimuda, Simon G; Andia-Biraro, Irene; Sebina, Ismail; Egesa, Moses; Nalwoga, Angela; Smith, Steven G; Bagaya, Bernard S; Levin, Jonathan; Elliott, Alison M; Raynes, John G; +1 more... Cose, Stephen; (2020) Mycobacterium tuberculosis infection is associated with increased B cell responses to unrelated pathogens. Scientific reports, 10 (1). 14324-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-020-71044-4

Kitonsa, Jonathan; Ggayi, Abu-Baker; Anywaine, Zacchaeus; Kisaakye, Eva; Nsangi, Laura; Basajja, Vincent; Nyantaro, Mary; Watson-Jones, Deborah; Shukarev, Georgi; Ilsbroux, Ine; +2 more... Robinson, Cynthia; Kaleebu, Pontiano; (2020) Implementation of accelerated research: strategies for implementation as applied in a phase 1 Ad26.ZEBOV, MVA-BN-Filo two-dose Ebola vaccine clinical trial in Uganda. GLOBAL HEALTH ACTION, 13 (1). 1829829-. ISSN 1654-9716 DOI: https://doi.org/10.1080/16549716.2020.1829829

Kitonsa, Jonathan; Nsubuga, Rebecca; Mayanja, Yunia; Kiwanuka, Julius; Nikweri, Yofesi; Onyango, Martin; Anywaine, Zacchaeus; Ggayi, Abu-Baker; Kibengo, Freddie Mukasa; Kaleebu, Pontiano; +1 more... Day, Jeremy; (2020) Determinants of two-year mortality among HIV positive patients with Cryptococcal meningitis initiating standard antifungal treatment with or without adjunctive dexamethasone in Uganda. PLOS NEGLECTED TROPICAL DISEASES, 14 (11). e0008823-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0008823

Lubyayi, Lawrence; Mawa, Patrice A; Nabakooza, Grace; Nakibuule, Marjorie; Tushabe, John Vianney; Serubanja, Joel; Aibo, Dorothy; Akurut, Hellen; Tumusiime, Josephine; Hasso-Agopsowicz, Mateusz; +7 more... Kaleebu, Pontiano; Levin, Jonathan; Dockrell, Hazel M; Smith, Steven; Webb, Emily L; Elliott, Alison M; Cose, Stephen; (2020) Maternal Latent Mycobacterium tuberculosis Does Not Affect the Infant Immune Response Following BCG at Birth: An Observational Longitudinal Study in Uganda. FRONTIERS IN IMMUNOLOGY, 11. 929-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2020.00929

Mugisha, James; Kinyanda, Eugene; Osafo, Joseph; Nalukenge, Winfred; Knizek, Birthe Loa; (2020) Health care professionals' perspectives on barriers to treatment seeking for formal health services among orphan children and adolescents with HIV/AIDS and mental distress in a rural district in central, Uganda. CHILD AND ADOLESCENT PSYCHIATRY AND MENTAL HEALTH, 14 (1). 26-. ISSN 1753-2000 DOI: https://doi.org/10.1186/s13034-020-00332-8

Musisi, Seggane; Kinyanda, Eugene; (2020) Long-Term Impact of War, Civil War, and Persecution in Civilian Populations—Conflict and Post-Traumatic Stress in African Communities. Frontiers in Psychiatry, 11. DOI: https://doi.org/10.3389/fpsyt.2020.00020

Nalumansi, Aminah; Lutalo, Tom; Kayiwa, John; Watera, Christine; Balinandi, Stephen; Kiconco, Jocelyn; Nakaseegu, Joweria; Olara, Denis; Odwilo, Emmanuel; Serwanga, Jennifer; +12 more... Kikaire, Bernard; Ssemwanga, Deogratius; Nabadda, Susan; Ssewanyana, Isaac; Atwine, Diane; Mwebesa, Henry; Bosa, Henry Kyobe; Nsereko, Christopher; Cotten, Matthew; Downing, Robert; Lutwama, Julius; Kaleebu, Pontiano; (2020) Field evaluation of the performance of a SARS-CoV-2 antigen rapid diagnostic test in Uganda using nasopharyngeal samples. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 104. pp. 282-286. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2020.10.073

Nash, S; Dietrich, J; Ssemata, AS; Herrera, C; O'Hagan, K; Else, L; Chiodi, F; Kelly, C; Shattock, R; Chirenje, M; +11 more... Lebina, L; Khoo, S; Bekker, L-G; Weiss, HA; Gray, C; Stranix-Chibanda, L; Kaleebu, P; Seeley, J; Martinson, N; Fox, J; CHAPS team; (2020) Combined HIV Adolescent Prevention Study (CHAPS): comparison of HIV pre-exposure prophylaxis regimens for adolescents in sub-Saharan Africa-study protocol for a mixed-methods study including a randomised controlled trial. Trials, 21 (1). 900-. DOI: https://doi.org/10.1186/s13063-020-04760-x

Prentice, Sarah; Webb, Emily L; Dockrell, Hazel M; Kaleebu, Pontiano; Elliott, Alison M; Cose, Stephen; (2020) Correction to: Investigating the non-specific effects of BCG vaccination on the innate immune system in Ugandan neonates: study protocol for a randomised controlled trial. TRIALS, 21 (1). 707-. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-020-04594-7

Rukundo, Godfrey Zari; Mpango, Richard Stephen; Ssembajjwe, Wilber; Gadow, Kenneth D; Patel, Vikram; Kinyanda, Eugene; (2020) Prevalence and risk factors for youth suicidality among perinatally infected youths living with HIV/AIDS in Uganda: the CHAKA study. CHILD AND ADOLESCENT PSYCHIATRY AND MENTAL HEALTH, 14 (1). 41-. ISSN 1753-2000 DOI: https://doi.org/10.1186/s13034-020-00348-0

Sallah, Neneh; Miley, Wendell; Labo, Nazzarena; Carstensen, Tommy; Fatumo, Segun; Gurdasani, Deepti; Pollard, Martin O; Dilthey, Alexander T; Mentzer, Alexander J; Marshall, Vickie; +10 more... Cornejo Castro, Elena M; Pomilla, Cristina; Young, Elizabeth H; Asiki, Gershim; Hibberd, Martin L; Sandhu, Manjinder; Kellam, Paul; Newton, Robert; Whitby, Denise; Barroso, Inês; (2020) Distinct genetic architectures and environmental factors associate with host response to the γ2-herpesvirus infections. NATURE COMMUNICATIONS, 11 (1). 3849-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-020-17696-2

Segujja, Farouk; Omooja, Jonah; Lunkuse, Sandra; Nanyonjo, Maria; Nabirye, Stella E; Nassolo, Faridah; Bugembe, Daniel L; Bbosa, Nicholas; Kateete, David P; Ssenyonga, William; +5 more... Mayanja, Yunia; Nsubuga, Rebecca N; Seeley, Janet; Kaleebu, Pontiano; Ssemwanga, Deogratius; (2020) High Levels of Acquired HIV Drug Resistance Following Virological Nonsuppression in HIV-Infected Women from a High-Risk Cohort in Uganda. AIDS research and human retroviruses, 36 (9). pp. 782-791. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2019.0279

Ssemwanga, Deogratius; Asio, Juliet; Watera, Christine; Nannyonjo, Maria; Nassolo, Faridah; Lunkuse, Sandra; Salazar-Gonzalez, Jesus F; Salazar, Maria G; Sanyu, Grace; Lutalo, Tom; +12 more... Kabuga, Usher; Ssewanyana, Isaac; Namatovu, Faridah; Namayanja, Grace; Namale, Alice; Raizes, Elliot; Kaggwa, Mugagga; Namuwenge, Norah; Kirungi, Wilford; Katongole-Mbidde, Edward; Kaleebu, Pontiano; Uganda HIV Drug Resistance Technical Working Group; (2020) Prevalence of viral load suppression, predictors of virological failure and patterns of HIV drug resistance after 12 and 48 months on first-line antiretroviral therapy: a national cross-sectional survey in Uganda. The Journal of antimicrobial chemotherapy, 75 (5). pp. 1280-1289. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkz561

Ssemwanga, Deogratius; Bbosa, Nicholas; Nsubuga, Rebecca N; Ssekagiri, Alfred; Kapaata, Anne; Nannyonjo, Maria; Nassolo, Faridah; Karabarinde, Alex; Mugisha, Joseph; Seeley, Janet; +3 more... Yebra, Gonzalo; Leigh Brown, Andrew; Kaleebu, Pontiano; (2020) The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda. Viruses, 12 (11). p. 1283. DOI: https://doi.org/10.3390/v12111283

Tino, Salome; Mayanja, Billy N; Mubiru, Michael Charles; Eling, Emmanuel; Ddumba, Edward; Kaleebu, Pontiano; Nyirenda, Moffat; (2020) Prevalence and factors associated with overweight and obesity among patients with type 2 diabetes mellitus in Uganda-a descriptive retrospective study. BMJ open, 10 (11). e039258-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2020-039258