Ajileye, Adebisi; Alvarez, Nataly; Merker, Matthias; Walker, Timothy M; Akter, Suriya; Brown, Kerstin; Moradigaravand, Danesh; Schön, Thomas; Andres, Sönke; Schleusener, Viola; +14 more... Omar, Shaheed V; Coll, Francesc; Huang, Hairong; Diel, Roland; Ismail, Nazir; Parkhill, Julian; de Jong, Bouke C; Peto, Tim EA; Crook, Derrick W; Niemann, Stefan; Robledo, Jaime; Smith, E Grace; Peacock, Sharon J; Köser, Claudio U; (2017) Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays. Antimicrobial agents and chemotherapy, 61 (4). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02169-16

Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jacqueline M; Clark, Taane G; Hibberd, Martin L; (2017) Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. Scientific reports, 7 (1). 42225-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep42225

Berger, Cedric N; Crepin, Valerie F; Roumeliotis, Theodoros I; Wright, James C; Carson, Danielle; Pevsner-Fischer, Meirav; Furniss, R Christopher D; Dougan, Gordon; Dori-Bachash, Mally; Yu, Lu; +6 more... Clements, Abigail; Collins, James W; Elinav, Eran; Larrouy-Maumus, Gerald J; Choudhary, Jyoti S; Frankel, Gad; (2017) Citrobacter rodentium Subverts ATP Flux and Cholesterol Homeostasis in Intestinal Epithelial Cells In Vivo. Cell metabolism, 26 (5). 738-752.e6. ISSN 1550-4131 DOI: https://doi.org/10.1016/j.cmet.2017.09.003

Bernays, Sarah; Bukenya, Dominic; Thompson, Claire; Ssembajja, Fatuma; Seeley, Janet; (2017) Being an 'adolescent': The consequences of gendered risks for young people in rural Uganda. Childhood (Copenhagen, Denmark), 25 (1). pp. 19-33. ISSN 0907-5682 DOI: https://doi.org/10.1177/0907568217732119

Berto, A; Anh, PH; Carrique-Mas, JJ; Simmonds, P; Van Cuong, N; Tue, NT; Van Dung, N; Woolhouse, ME; Smith, I; Marsh, GA; +5 more... Bryant, JE; Thwaites, GE; Baker, S; Rabaa, MA; VIZIONS consortium; (2017) Detection of potentially novel paramyxovirus and coronavirus viral RNA in bats and rats in the Mekong Delta region of southern Viet Nam. Zoonoses and public health, 65 (1). pp. 30-42. ISSN 1863-1959 DOI: https://doi.org/10.1111/zph.12362

Berto, Alessandra; Day, Jeremy; Van Vinh Chau, Nguyen; Thwaites, Guy E; My, Ngoc Nghiem; Baker, Stephen; Darton, Thomas C; (2017) Current challenges and possible solutions to improve access to care and treatment for hepatitis C infection in Vietnam: a systematic review. BMC infectious diseases, 17 (1). 260-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2360-6

Blanchet, K; Ramesh, A; Frison, S; Warren, E; Hossain, M; Smith, J; Knight, A; Post, N; Lewis, C; Woodward, A; +5 more... Dahab, M; Ruby, A; Sistenich, V; Pantuliano, S; Roberts, B; (2017) Evidence on public health interventions in humanitarian crises. Lancet. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(16)30768-1

Bricio-Moreno, Laura; Ebruke, Chinelo; Chaguza, Chrispin; Cornick, Jennifer; Kwambana-Adams, Brenda; Yang, Marie; Mackenzie, Grant; Wren, Brendan W; Everett, Dean; Antonio, Martin; +1 more... Kadioglu, Aras; (2017) Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia. The Journal of infectious diseases, 216 (10). pp. 1318-1327. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix472

Brodrick, Hayley J; Raven, Kathy E; Kallonen, Teemu; Jamrozy, Dorota; Blane, Beth; Brown, Nicholas M; Martin, Veronique; Török, M Estée; Parkhill, Julian; Peacock, Sharon J; (2017) Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom. Genome medicine, 9 (1). 70-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0457-6

Cairns, MD; Preston, MD; Hall, CL; Gerding, DN; Hawkey, PM; Kato, H; Kim, H; Kuijper, EJ; Lawley, TD; Pituch, H; +8 more... Reid, S; Kullin, B; Riley, TV; Solomon, K; Tsai, PJ; Weese, JS; Stabler, RA; Wren, BW; (2017) Correction for Cairns et al., "Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages". Journal of clinical microbiology, 55 (6). 1971-. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00487-17 Full text not available from this repository.

Carrion Martin, AI; Pebody, RG; Danis, K; Ellis, J; Niazi, S; DE Lusignan, S; Brown, KE; Zambon, M; Allen, DJ; (2017) The emergence of enterovirus D68 in England in autumn 2014 and the necessity for reinforcing enterovirus respiratory screening. Epidemiology and infection. pp. 1-10. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268817000590

Chewapreecha, C; Holden, MT; Vehkala, M; Välimäki, N; Yang, Z; Harris, SR; Mather, AE; Tuanyok, A; De Smet, B; Le Hello, S; +13 more... Bizet, C; Mayo, M; Wuthiekanun, V; Limmathurotsakul, D; Phetsouvanh, R; Spratt, BG; Corander, J; Keim, P; Dougan, G; Dance, DA; Currie, BJ; Parkhill, J; Peacock, SJ; (2017) Global and regional dissemination and evolution of Burkholderia pseudomallei. Nature microbiology, 2. p. 16263. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2016.263

Claessens, Antoine; Affara, Muna; Assefa, Samuel A; Kwiatkowski, Dominic P; Conway, David J; (2017) Culture adaptation of malaria parasites selects for convergent loss-of-function mutants. Scientific reports, 7 (1). 41303-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep41303

Coll, Francesc; Harrison, Ewan M; Toleman, Michelle S; Reuter, Sandra; Raven, Kathy E; Blane, Beth; Palmer, Beverley; Kappeler, A Ruth M; Brown, Nicholas M; Török, M Estée; +2 more... Parkhill, Julian; Peacock, Sharon J; (2017) Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community. Science translational medicine, 9 (413). eaak9745-eaak9745. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aak9745

Cornick, Jennifer E; Tastan Bishop, Özlem; Yalcin, Feyruz; Kiran, Anmol M; Kumwenda, Benjamin; Chaguza, Chrispin; Govindpershad, Shanil; Ousmane, Sani; Senghore, Madikay; du Plessis, Mignon; +15 more... Pluschke, Gerd; Ebruke, Chinelo; McGee, Lesley; Sigaùque, Beutel; Collard, Jean-Marc; Bentley, Stephen D; Kadioglu, Aras; Antonio, Martin; von Gottberg, Anne; French, Neil; Klugman, Keith P; Heyderman, Robert S; Alderson, Mark; Everett, Dean B; PAGe consortium; (2017) The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1. Vaccine, 35 (6). pp. 972-980. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.12.037

Cortes, Teresa; Schubert, Olga T; Banaei-Esfahani, Amir; Collins, Ben C; Aebersold, Ruedi; Young, Douglas B; (2017) Delayed effects of transcriptional responses in Mycobacterium tuberculosis exposed to nitric oxide suggest other mechanisms involved in survival. Scientific reports, 7 (1). 8208-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08306-1

Duffy, Craig W; Ba, Hampate; Assefa, Samuel; Ahouidi, Ambroise D; Deh, Yacine B; Tandia, Abderahmane; Kirsebom, Freja CM; Kwiatkowski, Dominic P; Conway, David J; (2017) Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution. Molecular ecology, 26 (11). pp. 2880-2894. ISSN 0962-1083 DOI: https://doi.org/10.1111/mec.14066

Dung, Tran Thi Ngoc; Duy, Pham Thanh; Sessions, October M; Sangumathi, Uma K; Phat, Voong Vinh; Tam, Pham Thi Thanh; To, Nguyen Thi Nguyen; Phuc, Tran My; Hong Chau, Tran Thi; Chau, Nguyen Ngoc Minh; +4 more... Minh, Ngoc Nguyen; Thwaites, Guy E; Rabaa, Maia A; Baker, Stephen; (2017) A universal genome sequencing method for rotavirus A from human fecal samples which identifies segment reassortment and multi-genotype mixed infection. BMC genomics, 18 (1). 324-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-3714-6

Dyson, Zoe A; Thanh, Duy Pham; Bodhidatta, Ladaporn; Mason, Carl Jeffries; Srijan, Apichai; Rabaa, Maia A; Vinh, Phat Voong; Thanh, Tuyen Ha; Thwaites, Guy E; Baker, Stephen; +1 more... Holt, Kathryn E; (2017) Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program. PLoS neglected tropical diseases, 11 (1). e0005274-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005274

Fajardo, Teodoro; Sung, Po-Yu; Celma, Cristina C; Roy, Polly; (2017) Rotavirus Genomic RNA Complex Forms via Specific RNA-RNA Interactions: Disruption of RNA Complex Inhibits Virus Infectivity. Viruses, 9 (7). p. 167. ISSN 1999-4915 DOI: https://doi.org/10.3390/v9070167

Ganter, M; Goldberg, JM; Dvorin, JD; Paulo, JA; King, JG; Tripathi, AK; Paul, AS; Yang, J; Coppens, I; Jiang, RH; +5 more... Elsworth, B; Baker, DA; Dinglasan, RR; Gygi, SP; Duraisingh, MT; (2017) Plasmodium falciparum CRK4 directs continuous rounds of DNA replication during schizogony. Nature microbiology, 2. p. 17017. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2017.17

Gomes, Ana Rita; Ravenhall, Matt; Benavente, Ernest Diez; Talman, Arthur; Sutherland, Colin; Roper, Cally; Clark, Taane G; Campino, Susana; (2017) Corrigendum to "Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes" [Int. J. Parasitol. Drugs and Drug Resist. 7 (2017) 174-180]. International journal for parasitology Drugs and drug resistance, 7 (3). 433-. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2017.11.001

Gomes, Ana Rita; Ravenhall, Matt; Benavente, Ernest Diez; Talman, Arthur; Sutherland, Colin; Roper, Cally; Clark, Taane G; Campino, Susana; (2017) Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes. International journal for parasitology Drugs and drug resistance, 7 (2). pp. 174-180. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2017.03.001

Grandjean, Louis; Gilman, Robert H; Iwamoto, Tomatada; Köser, Claudio U; Coronel, Jorge; Zimic, Mirko; Török, M Estee; Ayabina, Diepreye; Kendall, Michelle; Fraser, Christophe; +5 more... Harris, Simon; Parkhill, Julian; Peacock, Sharon J; Moore, David AJ; Colijn, Caroline; (2017) Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru. PloS one, 12 (12). e0189838-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0189838

Greenwood, Brian; Dicko, Alassane; Sagara, Issaka; Zongo, Issaka; Tinto, Halidou; Cairns, Matthew; Kuepfer, Irene; Milligan, Paul; Ouedraogo, Jean-Bosco; Doumbo, Ogobara; +1 more... Chandramohan, Daniel; (2017) Seasonal vaccination against malaria: a potential use for an imperfect malaria vaccine. Malaria journal, 16 (1). 182-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1841-9

Göhler, Andre; Trung, Trinh Thanh; Hopf, Verena; Kohler, Christian; Hartleib, Jörg; Wuthiekanun, Vanaporn; Peacock, Sharon J; Limmathurotsakul, Direk; Tuanyok, Apichai; Steinmetz, Ivo; (2017) Multitarget Quantitative PCR Improves Detection and Predicts Cultivability of the Pathogen Burkholderia pseudomallei. Applied and environmental microbiology, 83 (8). ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.03212-16

Harrison, Ewan M; Coll, Francesc; Toleman, Michelle S; Blane, Beth; Brown, Nicholas M; Török, M Estee; Parkhill, Julian; Peacock, Sharon J; (2017) Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England. Scientific reports, 7 (1). 7406-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-07662-2

Heinson, Ashley I; Gunawardana, Yawwani; Moesker, Bastiaan; Hume, Carmen C Denman; Vataga, Elena; Hall, Yper; Stylianou, Elena; McShane, Helen; Williams, Ann; Niranjan, Mahesan; +1 more... Woelk, Christopher H; (2017) Enhancing the Biological Relevance of Machine Learning Classifiers for Reverse Vaccinology. International journal of molecular sciences, 18 (2). p. 312. ISSN 1422-0067 DOI: https://doi.org/10.3390/ijms18020312

Heyckendorf, Jan; Andres, Sönke; Köser, Claudio U; Olaru, Ioana D; Schön, Thomas; Sturegård, Erik; Beckert, Patrick; Schleusener, Viola; Kohl, Thomas A; Hillemann, Doris; +6 more... Moradigaravand, Danesh; Parkhill, Julian; Peacock, Sharon J; Niemann, Stefan; Lange, Christoph; Merker, Matthias; (2017) What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis. Antimicrobial agents and chemotherapy, 62 (2). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01550-17

Holmes, CW; Rahman, S; Allen, DJ; Bandi, S; Tang, JW; (2017) Human parechovirus cluster in the UK, 8 May-2 August 2016-sequence analysis. Journal of clinical virology, 93. pp. 37-39. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2017.05.018

Jamrozy, Dorota; Coll, Francesc; Mather, Alison E; Harris, Simon R; Harrison, Ewan M; MacGowan, Alasdair; Karas, Andreas; Elston, Tony; Estée Török, M; Parkhill, Julian; +1 more... Peacock, Sharon J; (2017) Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events. BMC genomics, 18 (1). 684-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-017-4065-z

Johnson, Rebecca; Byrne, Alexander; Berger, Cedric N; Klemm, Elizabeth; Crepin, Valerie F; Dougan, Gordon; Frankel, Gad; (2017) The Type III Secretion System Effector SptP of Salmonella enterica Serovar Typhi. Journal of bacteriology, 199 (4). e00647-e00616. ISSN 0021-9193 DOI: https://doi.org/10.1128/JB.00647-16

Johnson, Rebecca; Ravenhall, Matt; Pickard, Derek; Dougan, Gordon; Byrne, Alexander; Frankel, Gad; (2017) Comparison of Salmonella enterica Serovars Typhi and Typhimurium Reveals Typhoidal Serovar-Specific Responses to Bile. Infection and immunity, 86 (3). e00490-e00417. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00490-17

Kallonen, Teemu; Brodrick, Hayley J; Harris, Simon R; Corander, Jukka; Brown, Nicholas M; Martin, Veronique; Peacock, Sharon J; Parkhill, Julian; (2017) Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. Genome research, 27 (8). pp. 1437-1449. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.216606.116

Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... Rao, S; Shafiq, S; Hasan, Z; (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107. pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012

Kelly, C; Gundogdu, O; Pircalabioru, G; Cean, A; Scates, P; Linton, M; Pinkerton, L; Magowan, E; Stef, L; Simiz, E; +6 more... Pet, I; Stewart, S; Stabler, R; Wren, B; Dorrell, N; Corcionivoschi, N; (2017) The In Vitro and In Vivo Effect of Carvacrol in Preventing Campylobacter Infection, Colonization and in Improving Productivity of Chicken Broilers. Foodborne pathogens and disease. ISSN 1535-3141 DOI: https://doi.org/10.1089/fpd.2016.2265

Kwambana-Adams, Brenda; Hanson, Blake; Worwui, Archibald; Agbla, Schadrac; Foster-Nyarko, Ebenezer; Ceesay, Fatima; Ebruke, Chinelo; Egere, Uzochukwu; Zhou, Yanjiao; Ndukum, Maze; +5 more... Sodergren, Erica; Barer, Michael; Adegbola, Richard; Weinstock, George; Antonio, Martin; (2017) Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology. Scientific reports, 7 (1). 8127-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08717-0

Low, MSF; Tan, H; Hartman, M; Tam, CC; Hoo, C; Lim, J; Chiow, S; Lee, S; Thng, R; Cai, M; +2 more... Tan, Y; Lock, J; (2017) Parental perceptions of childhood seasonal influenza vaccination in Singapore: A cross-sectional survey. Vaccine. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.09.060

Ludden, Catherine; Reuter, Sandra; Judge, Kim; Gouliouris, Theodore; Blane, Beth; Coll, Francesc; Naydenova, Plamena; Hunt, Martin; Tracey, Alan; Hopkins, Katie L; +4 more... Brown, Nicholas M; Woodford, Neil; Parkhill, Julian; Peacock, Sharon J; (2017) Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing. Microbial genomics, 3 (7). e000114-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000114

Macedo, Juan P; Currier, Rachel B; Wirdnam, Corina; Horn, David; Alsford, Sam; Rentsch, Doris; (2017) Ornithine uptake and the modulation of drug sensitivity in Trypanosoma brucei. FASEB journal, 31 (10). pp. 4649-4660. ISSN 0892-6638 DOI: https://doi.org/10.1096/fj.201700311R

Matsuo, Eiko; Yamazaki, Kiyoshi; Tsuruta, Hiroki; Roy, Polly; (2017) Interaction between a Unique Minor Protein and a Major Capsid Protein of Bluetongue Virus Controls Virus Infectivity. Journal of virology, 92 (3). ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01784-17

Messenger, LA; Gilman, RH; Verastegui, M; Galdos-Cardenas, G; Sanchez, G; Valencia, E; Sanchez, L; Malaga, E; Rendell, VR; Jois, M; +8 more... Shah, V; Santos, N; Del Carmen Abastoflor, M; LaFuente, C; Colanzi, R; Bozo, R; Bern, C; Working Group on Chagas disease in Bolivia and Peru; (2017) Towards improving early diagnosis of congenital Chagas disease in an endemic setting. Clinical infectious diseases. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix277

Moradigaravand, Danesh; Gouliouris, Theodore; Blane, Beth; Naydenova, Plamena; Ludden, Catherine; Crawley, Charles; Brown, Nicholas M; Török, M Estée; Parkhill, Julian; Peacock, Sharon J; (2017) Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients. Genome medicine, 9 (1). 119-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0507-0

Moradigaravand, Danesh; Jamrozy, Dorota; Mostowy, Rafal; Anderson, Annaliesa; Nickerson, Emma K; Thaipadungpanit, Janjira; Wuthiekanun, Vanaporn; Limmathurotsakul, Direk; Tandhavanant, Sarunporn; Wikraiphat, Chanthiwa; +10 more... Wongsuvan, Gumphol; Teerawattanasook, Nittaya; Jutrakul, Yaowaruk; Srisurat, Nuttiya; Chaimanee, Prajuab; Eoin West, T; Blane, Beth; Parkhill, Julian; Chantratita, Narisara; Peacock, Sharon J; (2017) Evolution of the Staphylococcus argenteus ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes. mBio, 8 (4). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00802-17

Moradigaravand, Danesh; Martin, Veronique; Peacock, Sharon J; Parkhill, Julian; (2017) Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland. mBio, 8 (1). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01976-16

Moradigaravand, Danesh; Martin, Veronique; Peacock, Sharon J; Parkhill, Julian; (2017) Population structure of multidrug resistant Klebsiella oxytoca within hospitals across the UK and Ireland identifies sharing of virulence and resistance genes with K. pneumoniae. GENOME BIOLOGY AND EVOLUTION, 9 (3). pp. 574-587. ISSN 1759-6653 DOI: https://doi.org/10.1093/gbe/evx019

Mullineaux-Sanders, Caroline; Collins, James W; Ruano-Gallego, David; Levy, Maayan; Pevsner-Fischer, Meirav; Glegola-Madejska, Izabela T; Sågfors, Agnes M; Wong, Joshua LC; Elinav, Eran; Crepin, Valerie F; +1 more... Frankel, Gad; (2017) Citrobacter rodentium Relies on Commensals for Colonization of the Colonic Mucosa. Cell reports, 21 (12). pp. 3381-3389. ISSN 2211-1247 DOI: https://doi.org/10.1016/j.celrep.2017.11.086

Murray, Lee; Stewart, Lindsay B; Tarr, Sarah J; Ahouidi, Ambroise D; Diakite, Mahamadou; Amambua-Ngwa, Alfred; Conway, David J; (2017) Multiplication rate variation in the human malaria parasite Plasmodium falciparum. Scientific reports, 7 (1). 6436-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-06295-9

Nakatani, Yoshio; Opel-Reading, Helen K; Merker, Matthias; Machado, Diana; Andres, Sönke; Kumar, S Siva; Moradigaravand, Danesh; Coll, Francesc; Perdigão, João; Portugal, Isabel; +19 more... Schön, Thomas; Nair, Dina; Devi, KR Uma; Kohl, Thomas A; Beckert, Patrick; Clark, Taane G; Maphalala, Gugu; Khumalo, Derrick; Diel, Roland; Klaos, Kadri; Aung, Htin Lin; Cook, Gregory M; Parkhill, Julian; Peacock, Sharon J; Swaminathan, Soumya; Viveiros, Miguel; Niemann, Stefan; Krause, Kurt L; Köser, Claudio U; (2017) Role of Alanine Racemase Mutations in Mycobacterium tuberculosis d-Cycloserine Resistance. Antimicrobial agents and chemotherapy, 61 (12). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01575-17

Pearson, Jaclyn S; Giogha, Cristina; Mühlen, Sabrina; Nachbur, Ueli; Pham, Chi LL; Zhang, Ying; Hildebrand, Joanne M; Oates, Clare V; Lung, Tania Wong Fok; Ingle, Danielle; +13 more... Dagley, Laura F; Bankovacki, Aleksandra; Petrie, Emma J; Schroeder, Gunnar N; Crepin, Valerie F; Frankel, Gad; Masters, Seth L; Vince, James; Murphy, James M; Sunde, Margaret; Webb, Andrew I; Silke, John; Hartland, Elizabeth L; (2017) EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation. Nature microbiology, 2 (4). 16258-. ISSN 2058-5276 DOI: https://doi.org/10.1038/nmicrobiol.2016.258

Portaliou, Athina G; Tsolis, Konstantinos C; Loos, Maria S; Balabanidou, Vassileia; Rayo, Josep; Tsirigotaki, Alexandra; Crepin, Valerie F; Frankel, Gad; Kalodimos, Charalampos G; Karamanou, Spyridoula; +1 more... Economou, Anastassios; (2017) Hierarchical protein targeting and secretion is controlled by an affinity switch in the type III secretion system of enteropathogenic Escherichia coli. The EMBO journal, 36 (23). pp. 3517-3531. ISSN 0261-4189 DOI: https://doi.org/10.15252/embj.201797515 Full text not available from this repository.

Raven, Kathy E; Gouliouris, Theodore; Brodrick, Hayley; Coll, Francesc; Brown, Nicholas M; Reynolds, Rosy; Reuter, Sandra; Török, M Estée; Parkhill, Julian; Peacock, Sharon J; (2017) Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing. Clinical infectious diseases, 64 (7). pp. 886-893. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciw872

Raven, Kathy E; Gouliouris, Theodore; Parkhill, Julian; Peacock, Sharon J; (2017) Genome-Based Analysis of Enterococcus faecium Bacteremia Associated with Recurrent and Mixed-Strain Infection. Journal of clinical microbiology, 56 (3). ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01520-17

Recker, Mario; Laabei, Maisem; Toleman, Michelle S; Reuter, Sandra; Saunderson, Rebecca B; Blane, Beth; Török, M Estee; Ouadi, Khadija; Stevens, Emily; Yokoyama, Maho; +7 more... Steventon, Joseph; Thompson, Luke; Milne, Gregory; Bayliss, Sion; Bacon, Leann; Peacock, Sharon J; Massey, Ruth C; (2017) Clonal differences in Staphylococcus aureus bacteraemia-associated mortality. Nature microbiology, 2 (10). pp. 1381-1388. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-017-0001-x

Roy, P; (2017) Bluetongue virus structure and assembly. Current opinion in virology, 24. pp. 115-123. ISSN 1879-6257 DOI: https://doi.org/10.1016/j.coviro.2017.05.003

Runcharoen, Chakkaphan; Moradigaravand, Danesh; Blane, Beth; Paksanont, Suporn; Thammachote, Jeeranan; Anun, Suthatip; Parkhill, Julian; Chantratita, Narisara; Peacock, Sharon J; (2017) Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae. Genome medicine, 9 (1). 6-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0397-1

Runcharoen, Chakkaphan; Raven, Kathy E; Reuter, Sandra; Kallonen, Teemu; Paksanont, Suporn; Thammachote, Jeeranan; Anun, Suthatip; Blane, Beth; Parkhill, Julian; Peacock, Sharon J; +1 more... Chantratita, Narisara; (2017) Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand. Genome medicine, 9 (1). 81-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-017-0471-8

Sandu, Pamela; Crepin, Valerie F; Drechsler, Hauke; McAinsh, Andrew D; Frankel, Gad; Berger, Cedric N; (2017) The Enterohemorrhagic Escherichia coli Effector EspW Triggers Actin Remodeling in a Rac1-Dependent Manner. Infection and immunity, 85 (9). e00244-e00217. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00244-17

Seale, Anna C; Gordon, N Claire; Islam, Jasmin; Peacock, Sharon J; Scott, J Anthony G; (2017) AMR Surveillance in low and middle-income settings - A roadmap for participation in the Global Antimicrobial Surveillance System (GLASS). Wellcome open research, 2. 92-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12527.1

Singapore Zika Study Group; (2017) Outbreak of Zika virus infection in Singapore: an epidemiological, entomological, virological, and clinical analysis. The Lancet infectious diseases, 17 (8). pp. 813-821. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30249-9 Full text not available from this repository.

Suttisunhakul, Vichaya; Pumpuang, Apinya; Ekchariyawat, Peeraya; Wuthiekanun, Vanaporn; Elrod, Mindy G; Turner, Paul; Currie, Bart J; Phetsouvanh, Rattanaphone; Dance, David AB; Limmathurotsakul, Direk; +2 more... Peacock, Sharon J; Chantratita, Narisara; (2017) Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for the identification of Burkholderia pseudomallei from Asia and Australia and differentiation between Burkholderia species. PloS one, 12 (4). e0175294-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0175294

Teparrukkul, Prapit; Kongkasame, Worrarat; Chitsaeng, Songla; Wongsuwan, Gumphol; Wuthiekanun, Vanaporn; Peacock, Sharon J; Limmathurotsakul, Direk; (2017) Gastrointestinal tract involvement in melioidosis. Transactions of the Royal Society of Tropical Medicine and Hygiene, 111 (4). pp. 185-187. ISSN 0035-9203 DOI: https://doi.org/10.1093/trstmh/trx031

The, Hao Chung; Florez de Sessions, Paola; Jie, Song; Pham Thanh, Duy; Thompson, Corinne N; Nguyen Ngoc Minh, Chau; Chu, Collins Wenhan; Tran, Tuan-Anh; Thomson, Nicholas R; Thwaites, Guy E; +3 more... Rabaa, Maia A; Hibberd, Martin; Baker, Stephen; (2017) Assessing gut microbiota perturbations during the early phase of infectious diarrhea in Vietnamese children. Gut microbes, 9 (1). pp. 38-54. ISSN 1949-0976 DOI: https://doi.org/10.1080/19490976.2017.1361093

Thi Ty Hang, Vu; Thi Han Ny, Nguyen; My Phuc, Tran; Thi Thanh Tam, Pham; Thao Huong, Dang; Dang Trung Nghia, Ho; Tran Anh Vu, Nguyen; Thi Hong Phuong, Pham; Van Xang, Nguyen; Dong, Nguyen; +9 more... Nhu Hiep, Pham; Van Hung, Nguyen; Tinh Hien, Tran; Rabaa, Maia; Thwaites, Guy E; Baker, Stephen; Van Tan, Le; van Doorn, H Rogier; VIZIONS consortium; (2017) Evaluation of the Luminex xTAG Respiratory Viral Panel FAST v2 assay for detection of multiple respiratory viral pathogens in nasal and throat swabs in Vietnam. Wellcome open research, 2. 80-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12429.2

Toleman, Michelle S; Watkins, Emmeline R; Williams, Tom; Blane, Beth; Sadler, Belinda; Harrison, Ewan M; Coll, Francesc; Parkhill, Julian; Nazareth, Bernadette; Brown, Nicholas M; +1 more... Peacock, Sharon J; (2017) Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting. Clinical infectious diseases, 65 (12). pp. 2069-2077. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix539

Tosas Auguet, Olga; Stabler, Richard A; Betley, Jason; Preston, Mark D; Dhaliwal, Mandeep; Gaunt, Michael; Ioannou, Avgousta; Desai, Nergish; Karadag, Tacim; Batra, Rahul; +4 more... Otter, Jonathan A; Marbach, Helene; Clark, Taane G; Edgeworth, Jonathan D; (2017) Frequent Undetected Ward-Based Methicillin-Resistant Staphylococcus aureus Transmission Linked to Patient Sharing Between Hospitals. Clinical infectious diseases, 66 (6). pp. 840-848. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix901

Tremp, Annie Z; Al-Khattaf, Fatimah S; Dessens, Johannes T; (2017) Palmitoylation of Plasmodium alveolins promotes cytoskeletal function. Molecular and biochemical parasitology, 213. pp. 16-21. ISSN 0166-6851 DOI: https://doi.org/10.1016/j.molbiopara.2017.02.003

Turner, Claire E; Bedford, Luke; Brown, Nicholas M; Judge, Kim; Török, M Estée; Parkhill, Julian; Peacock, Sharon J; (2017) Community outbreaks of group A Streptococcus revealed by genome sequencing. Scientific reports, 7 (1). 8554-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-08914-x

Tweedy, Joshua G; Escriva, Eric; Topf, Maya; Gompels, Ursula A; (2017) Analyses of Tissue Culture Adaptation of Human Herpesvirus-6A by Whole Genome Deep Sequencing Redefines the Reference Sequence and Identifies Virus Entry Complex Changes. Viruses, 10 (1). p. 16. ISSN 1999-4915 DOI: https://doi.org/10.3390/v10010016

Tweedy, Joshua G; Prusty, Bhupesh K; Gompels, Ursula A; (2017) Use of whole genome deep sequencing to define emerging minority variants in virus envelope genes in herpesvirus treated with novel antimicrobial K21. Antiviral research, 146. pp. 201-204. ISSN 0166-3542 DOI: https://doi.org/10.1016/j.antiviral.2017.09.011

Wagley, S; Vanaporn, M; Rinchai, D; Conejero, L; Lertmemongkolchai, G; Bancroft, GJ; Titball, RW; (2017) A proteasome inhibitor produced by Burkholderia pseudomallei modulates intracellular growth. Microbial pathogenesis, 107. pp. 175-180. ISSN 0882-4010 DOI: https://doi.org/10.1016/j.micpath.2017.03.015

West, T Eoin; Wikraiphat, Chanthiwa; Tandhavanant, Sarunporn; Ariyaprasert, Pitchayanant; Suntornsut, Pornpan; Okamoto, Shawna; Mahavanakul, Weera; Srisamang, Pramot; Phiphitaporn, Sunchai; Anukunananchai, Jirasak; +3 more... Chetchotisakd, Ploenchan; Peacock, Sharon J; Chantratita, Narisara; (2017) Patient Characteristics, Management, and Predictors of Outcome from Severe Community-Onset Staphylococcal Sepsis in Northeast Thailand: A Prospective Multicenter Study. The American journal of tropical medicine and hygiene, 96 (5). pp. 1042-1049. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.16-0606

Yeung, Amy TY; Hale, Christine; Lee, Amy H; Gill, Erin E; Bushell, Wendy; Parry-Smith, David; Goulding, David; Pickard, Derek; Roumeliotis, Theodoros; Choudhary, Jyoti; +4 more... Thomson, Nick; Skarnes, William C; Dougan, Gordon; Hancock, Robert EW; (2017) Exploiting induced pluripotent stem cell-derived macrophages to unravel host factors influencing Chlamydia trachomatis pathogenesis. NATURE COMMUNICATIONS, 8. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms15013

Zellweger, Raphaël M; Carrique-Mas, Juan; Limmathurotsakul, Direk; Day, Nicholas PJ; Thwaites, Guy E; Baker, Stephen; Southeast Asia Antimicrobial Resistance Network; (2017) A current perspective on antimicrobial resistance in Southeast Asia. The Journal of antimicrobial chemotherapy, 72 (11). pp. 2963-2972. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkx260

Furnham, N; (2017) Complementary Sources of Protein Functional Information: The Far Side of GO. In: UNSPECIFIED, (ed.) The Gene Ontology Handbook. Humana Press, pp. 263-274. ISBN 1940-6029 DOI: https://doi.org/10.1007/978-1-4939-3743-1_19

Pino, P; Caldelari, R; Mukherjee, B; Vahokoski, J; Klages, N; Maco, B; Collins, CR; Blackman, MJ; Kursula, I; Heussler, V; +2 more... Brochet, M; Soldati-Favre, D; (2017) A multistage antimalarial targets the plasmepsins IX and X essential for invasion and egress. Technical Report. American Association for the Advancement of Science. DOI: https://doi.org/10.1126/science.aaf8675

Carmel, K; Gundogdu, O; Scates, P; Linton, M; Laurette, P; Stabler, R; Dorrell, N; Wren, WB; Corcionivoschi, N; (2017) The in vitro and in vivo effect of Carvacrol in preventing Campylobacter infection, colonisation and improve chicken broilers productivity. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648033 Full text not available from this repository.

Davies, C; Taylor, A; Gundogdu, O; Wren, WB; Elmi, A; Kelly, D; Dorrell, N; (2017) Investigating the biogenesis of Campylobacter jejuni outer membrane vesicle production. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648039 Full text not available from this repository.

Elmi, A; Dorey, A; Watson, E; Jagatia, H; Gundogdu, O; Bajaj-Elliott, M; Wren, WB; Smith, DGE; Dorrell, N; (2017) The bile salt sodium taurocholate induces Campylobacter jejuni outer membrane vesicle production and increases OMV-associated proteolytic activity. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648047 Full text not available from this repository.

Gundogdu, O; Teixeira da Silva, D; Mohammad, B; Elmi, A; Wren, WB; van Vliet, A; Dorrell, N; (2017) The Campylobacter jejuni oxidative stress regulator RrpB is associated with a genomic hypervariable region and altered oxidative stress resistance. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648056 Full text not available from this repository.

Hussein, M; Naz, N; Gundogdu, O; Wren, WB; Elmi, A; Dorrell, N; (2017) Further investigation of the roles of fibronectin-binding proteins CadF and FlpA during Campylobacter jejuni interactions with intestinal epithelial cells. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648029 Full text not available from this repository.

Liaw, J; Hachani, A; Wren, WB; Gundogdu, O; Dorrell, N; (2017) Investigation of the role of Campylobacter jejuni Type VI secretion system in secretion of effectors and interactions with host cells. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648024 Full text not available from this repository.

McKenna, A; Nompilo, S; Richmond, A; Gundogdu, O; Green, BD; Corcionivoschi, N; (2017) Efficient prevention of Campylobacter spp. entrance in broiler houses improves flock performance at slaughter. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648023 Full text not available from this repository.

di Sario, G; Gundogdu, O; Hussein, M; Wren, WB; Canonico, B; Papa, S; Elmi, A; Dorrell, N; (2017) Investigating Campylobacter jejuni interactions with endoplasmic reticulum in intestinal epithelial cells resulting in induction of the unfolded protein response. [Conference or Workshop Item] https://researchonline.lshtm.ac.uk/id/eprint/4648022 Full text not available from this repository.

Divis, P; (2017) Population genetic structure and genomic divergence in Plasmodium knowlesi. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04398418

Murray, L; (2017) Investigations into the within-host genomic diversity and phenotypic variation of Plasmodium falciparum. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.03928335

Musonda, KG; (2017) Human Cytomegalovirus Transmission in Early Childhood and Impact of Maternal HIV in Zambia: A Molecular Study. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.03615653

Teixeira da Silva, D; (2017) The role of the MarR transcriptional regulators RrpA and RrpB in the response of Campylobacter jejuni to oxidative and aerobic stress. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.03817562

Pearson, JS; Giogha, C; Mühlen, S; Nachbur, U; Pham, CL; Zhang, Y; Hildebrand, JM; Oates, CV; Lung, TW; Ingle, D; +13 more... Dagley, LF; Bankovacki, A; Petrie, EJ; Schroeder, GN; Crepin, VF; Frankel, G; Masters, SL; Vince, J; Murphy, JM; Sunde, M; Webb, AI; Silke, J; Hartland, EL; (2017) Erratum: EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation. Nature Research. DOI: https://doi.org/10.1038/nmicrobiol.2017.24 Full text not available from this repository.