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Afonso, Claudio L; Amarasinghe, Gaya K; Bányai, Krisztián; Bào, Yīmíng; Basler, Christopher F; Bavari, Sina; Bejerman, Nicolás; Blasdell, Kim R; Briand, François-Xavier; Briese, Thomas; +73 more... Bukreyev, Alexander; Calisher, Charles H; Chandran, Kartik; Chéng, Jiāsēn; Clawson, Anna N; Collins, Peter L; Dietzgen, Ralf G; Dolnik, Olga; Domier, Leslie L; Dürrwald, Ralf; Dye, John M; Easton, Andrew J; Ebihara, Hideki; Farkas, Szilvia L; Freitas-Astúa, Juliana; Formenty, Pierre; Fouchier, Ron AM; Fù, Yànpíng; Ghedin, Elodie; Goodin, Michael M; Hewson, Roger; Horie, Masayuki; Hyndman, Timothy H; Jiāng, Dàohóng; Kitajima, Elliot W; Kobinger, Gary P; Kondo, Hideki; Kurath, Gael; Lamb, Robert A; Lenardon, Sergio; Leroy, Eric M; Li, Ci-Xiu; Lin, Xian-Dan; Liú, Lìjiāng; Longdon, Ben; Marton, Szilvia; Maisner, Andrea; Mühlberger, Elke; Netesov, Sergey V; Nowotny, Norbert; Patterson, Jean L; Payne, Susan L; Paweska, Janusz T; Randall, Rick E; Rima, Bertus K; Rota, Paul; Rubbenstroth, Dennis; Schwemmle, Martin; Shi, Mang; Smither, Sophie J; Stenglein, Mark D; Stone, David M; Takada, Ayato; Terregino, Calogero; Tesh, Robert B; Tian, Jun-Hua; Tomonaga, Keizo; Tordo, Noël; Towner, Jonathan S; Vasilakis, Nikos; Verbeek, Martin; Volchkov, Viktor E; Wahl-Jensen, Victoria; Walsh, John A; Walker, Peter J; Wang, David; Wang, Lin-Fa; Wetzel, Thierry; Whitfield, Anna E; Xiè, Ji Tāo; Yuen, Kwok-Yung; Zhang, Yong-Zhen; Kuhn, Jens H; (2016) Taxonomy of the order Mononegavirales: update 2016. Archives of virology, 161 (8). pp. 2351-2360. ISSN 0304-8608 DOI: https://doi.org/10.1007/s00705-016-2880-1 Item availability may be restricted.

Agomo, Chimere Obiora; Oyibo, Wellington Aghoghovwia; Sutherland, Colin; Hallet, Rachael; Oguike, Mary; (2016) Assessment of Markers of Antimalarial Drug Resistance in Plasmodium falciparum Isolates from Pregnant Women in Lagos, Nigeria. PloS one, 11 (1). e0146908-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0146908

Ahmed, Umul Kulthum; Maller, N Claire; Iqbal, Asif J; Al-Riyami, Lamyaa; Harnett, William; Raynes, John G; (2016) The Carbohydrate-linked Phosphorylcholine of the Parasitic Nematode Product ES-62 Modulates Complement Activation. The Journal of biological chemistry, 291 (22). pp. 11939-11953. ISSN 0021-9258 DOI: https://doi.org/10.1074/jbc.M115.702746

Al-Khattaf, Fatimah S; Tremp, Annie Z; El-Houderi, Amira; Dessens, Johannes T; (2016) The Plasmodium alveolin IMC1a is stabilised by its terminal cysteine motifs and facilitates sporozoite morphogenesis and infectivity in a dose-dependent manner. Molecular and biochemical parasitology, 211. pp. 48-56. ISSN 0166-6851 DOI: https://doi.org/10.1016/j.molbiopara.2016.09.004

Alegana, Victor A; Kigozi, Simon P; Nankabirwa, Joaniter; Arinaitwe, Emmanuel; Kigozi, Ruth; Mawejje, Henry; Kilama, Maxwell; Ruktanonchai, Nick W; Ruktanonchai, Corrine W; Drakeley, Chris; +7 more... Lindsay, Steve W; Greenhouse, Bryan; Kamya, Moses R; Smith, David L; Atkinson, Peter M; Dorsey, Grant; Tatem, Andrew J; (2016) Spatio-temporal analysis of malaria vector density from baseline through intervention in a high transmission setting. Parasites & vectors, 9 (1). 637-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-016-1917-3

Alenizi, Dhahi; Ringwood, Tamara; Redhwan, Alya; Bouraha, Bouchra; Wren, Brendan W; Prentice, Michael; McNally, Alan; (2016) All Yersinia enterocolitica are pathogenic: virulence of phylogroup 1 Y. enterocolitica in a Galleria mellonella infection model. Microbiology, 162 (8). pp. 1379-1387. ISSN 1350-0872 DOI: https://doi.org/10.1099/mic.0.000311 Full text not available from this repository.

Allen, David J; Trainor, Eamonn; Callaghan, Anna; O'Brien, Sarah J; Cunliffe, Nigel A; Iturriza-Gómara, Miren; (2016) Early Detection of Epidemic GII-4 Norovirus Strains in UK and Malawi: Role of Surveillance of Sporadic Acute Gastroenteritis in Anticipating Global Epidemics. PloS one, 11 (4). e0146972-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0146972

Alshaikhahmed, Kinda; Roy, Polly; (2016) Generation of virus-like particles for emerging epizootic haemorrhagic disease virus: Towards the development of safe vaccine candidates. Vaccine, 34 (8). pp. 1103-1108. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.12.069 Full text not available from this repository.

Alves, Eduardo; Maluf, Fernando V; Bueno, Vânia B; Guido, Rafael VC; Oliva, Glaucius; Singh, Maneesh; Scarpelli, Pedro; Costa, Fahyme; Sartorello, Robson; Catalani, Luiz H; +3 more... Brady, Declan; Tewari, Rita; Garcia, Celia RS; (2016) Biliverdin targets enolase and eukaryotic initiation factor 2 (eIF2α) to reduce the growth of intraerythrocytic development of the malaria parasite Plasmodium falciparum. Scientific Reports, 6 (1). 22093-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep22093

Amambua-Ngwa, Alfred; Danso, Bakary; Worwui, Archibald; Ceesay, Sukai; Davies, Nwakanma; Jeffries, David; D'Alessandro, Umberto; Conway, David; (2016) Exceptionally long-range haplotypes in Plasmodium falciparum chromosome 6 maintained in an endemic African population. Malaria journal, 15 (1). 515-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1560-7

Amir, Amirah; Russell, Bruce; Liew, Jonathan Wee Kent; Moon, Robert W; Fong, Mun Yik; Vythilingam, Indra; Subramaniam, Vellayan; Snounou, Georges; Lau, Yee Ling; (2016) Invasion characteristics of a Plasmodium knowlesi line newly isolated from a human. Scientific reports, 6 (1). 24623-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep24623

Andersson, Patiyan; Harris, Simon R; Smith, Helena MB Seth; Hadfield, James; O'Neill, Colette; Cutcliffe, Lesley T; Douglas, Fiona P; Asche, L Valerie; Mathews, John D; Hutton, Susan I; +5 more... Sarovich, Derek S; Tong, Steven YC; Clarke, Ian N; Thomson, Nicholas R; Giffard, Philip M; (2016) Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages. Nature communications, 7 (1). 10688-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms10688

Ansari, Hifzur Rahman; Templeton, Thomas J; Subudhi, Amit Kumar; Ramaprasad, Abhinay; Tang, Jianxia; Lu, Feng; Naeem, Raeece; Hashish, Yasmeen; Oguike, Mary C; Benavente, Ernest Diez; +6 more... Clark, Taane G; Sutherland, Colin J; Barnwell, John W; Culleton, Richard; Cao, Jun; Pain, Arnab; (2016) Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. International journal for parasitology, 46 (11). pp. 685-696. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2016.05.009

Atas, Ali; Seddon, Alan M; Ford, Donna C; Cooper, Ian A; Wren, Brendan W; Oyston, Petra CF; Karlyshev, Andrey V; (2016) YPTB3816 of Yersinia pseudotuberculosis strain IP32953 is a virulence-related metallo-oligopeptidase. BMC microbiology, 16 (1). 282-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-016-0900-7

Ba, H; Ahouidi, AD; Duffy, CW; Deh, YB; Diedhiou, C; Tandia, A; Diallo, MY; Assefa, S; Lô, BB; Elkory, MB; +1 more... Conway, DJ; (2016) [Evaluation of malaria rapid diagnostic test Optimal-IT® pLDH along the Plasmodium falciparum distribution limit in Mauritania]. Bulletin de la Societe de pathologie exotique (1990), 110 (1). pp. 31-37. ISSN 0037-9085 DOI: https://doi.org/10.1007/s13149-017-0541-y

Ba, Hampâté; Duffy, Craig W; Ahouidi, Ambroise D; Deh, Yacine Boubou; Diallo, Mamadou Yero; Tandia, Abderahmane; Conway, David J; (2016) Widespread distribution of Plasmodium vivax malaria in Mauritania on the interface of the Maghreb and West Africa. Malaria journal, 15 (1). 80-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1118-8

Baidjoe, Amrish Y; Stevenson, Jennifer; Knight, Philip; Stone, William; Stresman, Gillian; Osoti, Victor; Makori, Euniah; Owaga, Chrispin; Odongo, Wycliffe; China, Pauline; +5 more... Shagari, Shehu; Kariuki, Simon; Drakeley, Chris; Cox, Jonathan; Bousema, Teun; (2016) Factors associated with high heterogeneity of malaria at fine spatial scale in the Western Kenyan highlands. Malaria journal, 15 (1). 307-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1362-y

Baker, Kate S; Dallman, Timothy J; Behar, Adi; Weill, François-Xavier; Gouali, Malika; Sobel, Jeremy; Fookes, Maria; Valinsky, Lea; Gal-Mor, Ohad; Connor, Thomas R; +6 more... Nissan, Israel; Bertrand, Sophie; Parkhill, Julian; Jenkins, Claire; Cohen, Dani; Thomson, Nicholas R; (2016) Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities. EMERGING INFECTIOUS DISEASES, 22 (9). pp. 1545-1553. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2209.151953

Baqui, Abdullah H; Mitra, Dipak K; Begum, Nazma; Hurt, Lisa; Soremekun, Seyi; Edmond, Karen; Kirkwood, Betty; Bhandari, Nita; Taneja, Sunita; Mazumder, Sarmila; +19 more... Nisar, Muhammad Imran; Jehan, Fyezah; Ilyas, Muhammad; Ali, Murtaza; Ahmed, Imran; Ariff, Shabina; Soofi, Sajid B; Sazawal, Sunil; Dhingra, Usha; Dutta, Arup; Ali, Said M; Ame, Shaali M; Semrau, Katherine; Hamomba, Fern M; Grogan, Caroline; Hamer, Davidson H; Bahl, Rajiv; Yoshida, Sachiyo; Manu, Alexander; (2016) Neonatal mortality within 24 hours of birth in six low- and lower-middle-income countries. Bulletin of the World Health Organization, 94 (10). 752-758B. ISSN 0042-9686 DOI: https://doi.org/10.2471/BLT.15.160945

Baragaña, Beatriz; Norcross, Neil R; Wilson, Caroline; Porzelle, Achim; Hallyburton, Irene; Grimaldi, Raffaella; Osuna-Cabello, Maria; Norval, Suzanne; Riley, Jennifer; Stojanovski, Laste; +17 more... Simeons, Frederick RC; Wyatt, Paul G; Delves, Michael J; Meister, Stephan; Duffy, Sandra; Avery, Vicky M; Winzeler, Elizabeth A; Sinden, Robert E; Wittlin, Sergio; Frearson, Julie A; Gray, David W; Fairlamb, Alan H; Waterson, David; Campbell, Simon F; Willis, Paul; Read, Kevin D; Gilbert, Ian H; (2016) Discovery of a Quinoline-4-carboxamide Derivative with a Novel Mechanism of Action, Multistage Antimalarial Activity, and Potent in Vivo Efficacy. Journal of medicinal chemistry, 59 (21). pp. 9672-9685. ISSN 0022-2623 DOI: https://doi.org/10.1021/acs.jmedchem.6b00723

Biraro, Irene Andia; Kimuda, Simon; Egesa, Moses; Cose, Stephen; Webb, Emily L; Joloba, Moses; Smith, Steven G; Elliott, Alison M; Dockrell, Hazel M; Katamba, Achilles; (2016) The Use of Interferon Gamma Inducible Protein 10 as a Potential Biomarker in the Diagnosis of Latent Tuberculosis Infection in Uganda. PloS one, 11 (1). e0146098-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0146098

Bossé, Janine T; Chaudhuri, Roy R; Li, Yanwen; Leanse, Leon G; Fernandez Crespo, Roberto; Coupland, Paul; Holden, Matthew TG; Bazzolli, Denise M; Maskell, Duncan J; Tucker, Alexander W; +3 more... Wren, Brendan W; Rycroft, Andrew N; Langford, Paul R; (2016) Complete Genome Sequence of MIDG2331, a Genetically Tractable Serovar 8 Clinical Isolate of Actinobacillus pleuropneumoniae. Genome announcements, 4 (1). ISSN 2169-8287 DOI: https://doi.org/10.1128/genomeA.01667-15

Bossé, Janine T; Li, Yanwen; Fernandez Crespo, Roberto; Chaudhuri, Roy R; Rogers, Jon; Holden, Matthew TG; Maskell, Duncan J; Tucker, Alexander W; Wren, Brendan W; Rycroft, Andrew N; +2 more... Langford, Paul R; the BRaDP1T Consortium; (2016) ICEApl1, an Integrative Conjugative Element Related to ICEHin1056, Identified in the Pig Pathogen Actinobacillus pleuropneumoniae. Frontiers in microbiology, 7 (JUN). 810-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.00810

Bouché, Laura; Panico, Maria; Hitchen, Paul; Binet, Daniel; Sastre, Federico; Faulds-Pain, Alexandra; Valiente, Esmeralda; Vinogradov, Evgeny; Aubry, Annie; Fulton, Kelly; +5 more... Twine, Susan; Logan, Susan M; Wren, Brendan W; Dell, Anne; Morris, Howard R; (2016) The Type B Flagellin of Hypervirulent Clostridium difficile Is Modified with Novel Sulfonated Peptidylamido-glycans. The Journal of biological chemistry, 291 (49). pp. 25439-25449. ISSN 0021-9258 DOI: https://doi.org/10.1074/jbc.M116.749481

Bousema, Teun; Stresman, Gillian; Baidjoe, Amrish Y; Bradley, John; Knight, Philip; Stone, William; Osoti, Victor; Makori, Euniah; Owaga, Chrispin; Odongo, Wycliffe; +8 more... China, Pauline; Shagari, Shehu; Doumbo, Ogobara K; Sauerwein, Robert W; Kariuki, Simon; Drakeley, Chris; Stevenson, Jennifer; Cox, Jonathan; (2016) The Impact of Hotspot-Targeted Interventions on Malaria Transmission in Rachuonyo South District in the Western Kenyan Highlands: A Cluster-Randomized Controlled Trial. PLoS medicine, 13 (4). e1001993-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001993

Brant, Hayley L; Ewers, Robert M; Vythilingam, Indra; Drakeley, Chris; Benedick, Suzan; Mumford, John D; (2016) Vertical stratification of adult mosquitoes (Diptera: Culicidae) within a tropical rainforest in Sabah, Malaysia. Malaria journal, 15 (1). 370-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1416-1

Britton, Sumudu; Cheng, Qin; Grigg, Matthew J; Poole, Catherine B; Pasay, Cielo; William, Timothy; Fornace, Kimberley; Anstey, Nicholas M; Sutherland, Colin J; Drakeley, Chris; +1 more... McCarthy, James S; (2016) Sensitive Detection of Plasmodium vivax Using a High-Throughput, Colourimetric Loop Mediated Isothermal Amplification (HtLAMP) Platform: A Potential Novel Tool for Malaria Elimination. PLoS neglected tropical diseases, 10 (2). e0004443-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004443

Brock, PM; Fornace, KM; Parmiter, M; Cox, J; Drakeley, CJ; Ferguson, HM; Kao, RR; (2016) Plasmodium knowlesi transmission: integrating quantitative approaches from epidemiology and ecology to understand malaria as a zoonosis. Parasitology, 143 (4). pp. 389-400. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182015001821

Burrell-Saward, Hollie; Ward, Theresa H; (2016) Bioluminescence Imaging to Detect Late Stage Infection of African Trypanosomiasis. Journal of visualized experiments, 2016 (111). e54032-. ISSN 1940-087X DOI: https://doi.org/10.3791/54032

Cairns, MD; Preston, MD; Hall, CL; Gerding, DN; Hawkey, PM; Kato, H; Kim, H; Kuijper, EJ; Lawley, TD; Pituch, H; +8 more... Reid, S; Kullin, B; Riley, TV; Solomon, K; Tsai, PJ; Weese, JS; Stabler, RA; Wren, BW; (2016) Comparative Genome Analysis and Global Phylogeny of the Toxin Variant Clostridium difficile PCR Ribotype 017 Reveals the Evolution of Two Independent Sublineages. Journal of clinical microbiology, 55 (3). pp. 865-876. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01296-16

Cameron, Mary M; Acosta-Serrano, Alvaro; Bern, Caryn; Boelaert, Marleen; den Boer, Margriet; Burza, Sakib; Chapman, Lloyd AC; Chaskopoulou, Alexandra; Coleman, Michael; Courtenay, Orin; +21 more... Croft, Simon; Das, Pradeep; Dilger, Erin; Foster, Geraldine; Garlapati, Rajesh; Haines, Lee; Harris, Angela; Hemingway, Janet; Hollingsworth, T Déirdre; Jervis, Sarah; Medley, Graham; Miles, Michael; Paine, Mark; Picado, Albert; Poché, Richard; Ready, Paul; Rogers, Matthew; Rowland, Mark; Sundar, Shyam; de Vlas, Sake J; Weetman, David; (2016) Understanding the transmission dynamics of Leishmania donovani to provide robust evidence for interventions to eliminate visceral leishmaniasis in Bihar, India. Parasites & vectors, 9 (1). 25-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-016-1309-8

Campino, Susana; Benavente, Ernest Diez; Assefa, Samuel; Thompson, Eloise; Drought, Laura G; Taylor, Catherine J; Gorvett, Zaria; Carret, Celine K; Flueck, Christian; Ivens, Al C; +4 more... Kwiatkowski, Dominic P; Alano, Pietro; Baker, David A; Clark, Taane G; (2016) Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines. Malaria journal, 15 (1). 229-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1254-1

Carmona-Vicente, Noelia; Allen, David J; Rodríguez-Díaz, Jesús; Iturriza-Gómara, Miren; Buesa, Javier; (2016) Antibodies against Lewis antigens inhibit the binding of human norovirus GII.4 virus-like particles to saliva but not to intestinal Caco-2 cells. Virology journal, 13 (1). 82-. ISSN 1743-422X DOI: https://doi.org/10.1186/s12985-016-0538-y

Carmona-Vicente, Noelia; Vila-Vicent, Susana; Allen, David; Gozalbo-Rovira, Roberto; Iturriza-Gómara, Miren; Buesa, Javier; Rodríguez-Díaz, Jesús; (2016) Characterization of a Novel Conformational GII.4 Norovirus Epitope: Implications for Norovirus-Host Interactions. Journal of virology, 90 (17). pp. 7703-7714. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01023-16 Full text not available from this repository.

Casey, William T; Spink, Natasha; Cia, Felipe; Collins, Cassandra; Romano, Maria; Berisio, Rita; Bancroft, Gregory J; McClean, Siobhán; (2016) Identification of an OmpW homologue in Burkholderia pseudomallei, a protective vaccine antigen against melioidosis. Vaccine, 34 (23). pp. 2616-2621. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.03.088 Full text not available from this repository.

Celma, Cristina C; Stewart, Meredith; Wernike, Kerstin; Eschbaumer, Michael; Gonzalez-Molleda, Lorenzo; Breard, Emmanuel; Schulz, Claudia; Hoffmann, Bernd; Haegeman, Andy; De Clercq, Kris; +4 more... Zientara, Stephan; van Rijn, Piet A; Beer, Martin; Roy, Polly; (2016) Replication-Deficient Particles: New Insights into the Next Generation of Bluetongue Virus Vaccines. Journal of virology, 91 (1). ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.01892-16

Champion, Olivia L; Gourlay, Louise J; Scott, Andrew E; Lassaux, Patricia; Conejero, Laura; Perletti, Lucia; Hemsley, Claudia; Prior, Joann; Bancroft, Gregory; Bolognesi, Martino; +1 more... Titball, Richard W; (2016) Immunisation with proteins expressed during chronic murine melioidosis provides enhanced protection against disease. Vaccine, 34 (14). pp. 1665-1671. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.02.038 Full text not available from this repository.

Chang, David C; Hoang, Long T; Mohamed Naim, Ahmad Nazri; Dong, Hongping; Schreiber, Mark J; Hibberd, Martin L; Tan, Min Jie Alvin; Shi, Pei-Yong; (2016) Evasion of early innate immune response by 2'-O-methylation of dengue genomic RNA. Virology, 499. pp. 259-266. ISSN 0042-6822 DOI: https://doi.org/10.1016/j.virol.2016.09.022 Full text not available from this repository.

Chang, Hsiao-Han; Meibalan, Elamaran; Zelin, Justin; Daniels, Rachel; Eziefula, Alice C; Meyer, Evan C; Tadesse, Fitsum; Grignard, Lynn; Joice, Regina C; Drakeley, Chris; +5 more... Wirth, Dyann F; Volkman, Sarah K; Buckee, Caroline; Bousema, Teun; Marti, Matthias; (2016) Persistence of Plasmodium falciparum parasitemia after artemisinin combination therapy: evidence from a randomized trial in Uganda. Scientific reports, 6 (1). 26330-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep26330

Chen, Feng; Wang, Shuang; Jiang, Xiaoqian; Ding, Sijie; Lu, Yao; Kim, Jihoon; Sahinalp, S Cenk; Shimizu, Chisato; Burns, Jane C; Wright, Victoria J; +9 more... Png, Eileen; Hibberd, Martin L; Lloyd, David D; Yang, Hai; Telenti, Amalio; Bloss, Cinnamon S; Fox, Dov; Lauter, Kristin; Ohno-Machado, Lucila; (2016) PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS. Bioinformatics (Oxford, England), 33 (6). pp. 871-878. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btw758 Full text not available from this repository.

Chen, Ingrid; Gosling, Roly; Drakeley, Chris; Bousema, Teun; (2016) Mass Drug Administration for Malaria: A Means to What end? The Journal of infectious diseases, 214 (12). pp. 1790-1792. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiw484 Full text not available from this repository.

Chen, Tingting; Blanc, Caroline; Eder, Anke Z; Prados-Rosales, Rafael; Souza, Ana Camila Oliveira; Kim, Ryung S; Glatman-Freedman, Aharona; Joe, Maju; Bai, Yu; Lowary, Todd L; +6 more... Tanner, Rachel; Brennan, Michael J; Fletcher, Helen A; McShane, Helen; Casadevall, Arturo; Achkar, Jacqueline M; (2016) Association of Human Antibodies to Arabinomannan With Enhanced Mycobacterial Opsonophagocytosis and Intracellular Growth Reduction. The Journal of infectious diseases, 214 (2). pp. 300-310. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiw141

Chinen, Isabel; Galas, Marcelo; Tuduri, Ezequiel; Viñas, Maria Rosa; Carbonari, Carolina; Della Gaspera, Anabella; Nápoli, Daniela; Aanensen, David M; Argimón, Silvia; Thomson, Nicholas R; +25 more... Hughes, Darren; Baker, Stephen; Guzmán-Verri, Caterina; Holden, Matthew TG; Abdala, Alejandra M; Alvarez, Lucia P; Alvez, Beatriz; Barros, Rosana; Budall, Shirley; Campano, Constanza; Chamosa, Luciana S; Cheddie, Paul; Cisterna, Daniel; De Belder, Denise; Dropa, Milena; Durand, David; Elena, Alan; Fontecha, Gustavo; Huber, Claudia; Lemos, Ana Paula; Melli, Luciano; Paul, Roxana Elizabeth; Suarez, Lesly; Torres Flores, Julian; Campos, Josefina; (2016) Whole genome sequencing identifies independent outbreaks of Shigellosis in 2010 and 2011 in La Pampa Province, Argentina. BiorXiv. DOI: https://doi.org/10.1101/049940

Chung The, Hao; Rabaa, Maia A; Pham Thanh, Duy; De Lappe, Niall; Cormican, Martin; Valcanis, Mary; Howden, Benjamin P; Wangchuk, Sonam; Bodhidatta, Ladaporn; Mason, Carl J; +12 more... Nguyen Thi Nguyen, To; Vu Thuy, Duong; Thompson, Corinne N; Phu Huong Lan, Nguyen; Voong Vinh, Phat; Ha Thanh, Tuyen; Turner, Paul; Sar, Poda; Thwaites, Guy; Thomson, Nicholas R; Holt, Kathryn E; Baker, Stephen; (2016) South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study. PLoS medicine, 13 (8). e1002055-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1002055

Cissé, Badara; Ba, El Hadj; Sokhna, Cheikh; NDiaye, Jean Louis; Gomis, Jules F; Dial, Yankhoba; Pitt, Catherine; NDiaye, Mouhamed; Cairns, Matthew; Faye, Ernest; +18 more... NDiaye, Magatte; Lo, Aminata; Tine, Roger; Faye, Sylvain; Faye, Babacar; Sy, Ousmane; Konate, Lansana; Kouevijdin, Ekoue; Flach, Clare; Faye, Ousmane; Trape, Jean-Francois; Sutherland, Colin; Fall, Fatou Ba; Thior, Pape M; Faye, Oumar K; Greenwood, Brian; Gaye, Oumar; Milligan, Paul; (2016) Effectiveness of Seasonal Malaria Chemoprevention in Children under Ten Years of Age in Senegal: A Stepped-Wedge Cluster-Randomised Trial. PLoS medicine, 13 (11). e1002175-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1002175

Coker, Olabisi Oluwabukola; Chaiprasert, Angkana; Ngamphiw, Chumpol; Tongsima, Sissades; Regmi, Sanjib Mani; Clark, Taane G; Ong, Rick Twee Hee; Teo, Yik-Ying; Prammananan, Therdsak; Palittapongarnpim, Prasit; (2016) Genetic signatures of Mycobacterium tuberculosis Nonthaburi genotype revealed by whole genome analysis of isolates from tuberculous meningitis patients in Thailand. PeerJ, 4 (4). e1905-. ISSN 2167-8359 DOI: https://doi.org/10.7717/peerj.1905

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Grobler, Liesl; Mehtar, Shaheen; Dheda, Keertan; Adams, Shahieda; Babatunde, Sanni; van der Walt, Martie; Osman, Muhammad; (2016) The epidemiology of tuberculosis in health care workers in South Africa: a systematic review. BMC HEALTH SERVICES RESEARCH, 16 (1). 416-. ISSN 1472-6963 DOI: https://doi.org/10.1186/s12913-016-1601-5

Gundogdu, Ozan; da Silva, Daiani T; Mohammad, Banaz; Elmi, Abdi; Wren, Brendan W; van Vliet, Arnoud HM; Dorrell, Nick; (2016) The Campylobacter jejuni Oxidative Stress Regulator RrpB Is Associated with a Genomic Hypervariable Region and Altered Oxidative Stress Resistance. Frontiers in microbiology, 7 (DEC). 2117-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.02117

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Hill, Ross J; Ringel, Alessa; Knuepfer, Ellen; Moon, Robert W; Blackman, Michael J; van Ooij, Christiaan; (2016) Regulation and Essentiality of the StAR-related Lipid Transfer (START) Domain-containing Phospholipid Transfer Protein PFA0210c in Malaria Parasites. The Journal of biological chemistry, 291 (46). pp. 24280-24292. ISSN 0021-9258 DOI: https://doi.org/10.1074/jbc.M116.740506

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Holt, Kathryn; Kenyon, Johanna J; Hamidian, Mohammad; Schultz, Mark B; Pickard, Derek J; Dougan, Gordon; Hall, Ruth; (2016) Five decades of genome evolution in the globally distributed, extensively antibiotic-resistant Acinetobacter baumannii global clone 1. MICROBIAL GENOMICS, 2 (2). e000052-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000052

Howes, Ashleigh; Taubert, Christina; Blankley, Simon; Spink, Natasha; Wu, Xuemei; Graham, Christine M; Zhao, Jiawen; Saraiva, Margarida; Ricciardi-Castagnoli, Paola; Bancroft, Gregory J; +1 more... O'Garra, Anne; (2016) Differential Production of Type I IFN Determines the Reciprocal Levels of IL-10 and Proinflammatory Cytokines Produced by C57BL/6 and BALB/c Macrophages. Journal of immunology (Baltimore, Md, 197 (7). pp. 2838-2853. ISSN 0022-1767 DOI: https://doi.org/10.4049/jimmunol.1501923 Full text not available from this repository.

Ingle, Danielle J; Valcanis, Mary; Kuzevski, Alex; Tauschek, Marija; Inouye, Michael; Stinear, Tim; Levine, Myron M; Robins-Browne, Roy M; Holt, Kathryn E; (2016) In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages. MICROBIAL GENOMICS, 2 (7). e000064-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000064

International Typhoid Consortium; Wong, Vanessa K; Holt, Kathryn E; Okoro, Chinyere; Baker, Stephen; Pickard, Derek J; Marks, Florian; Page, Andrew J; Olanipekun, Grace; Munir, Huda; +22 more... Alter, Roxanne; Fey, Paul D; Feasey, Nicholas A; Weill, Francois-Xavier; Le Hello, Simon; Hart, Peter J; Kariuki, Samuel; Breiman, Robert F; Gordon, Melita A; Heyderman, Robert S; Jacobs, Jan; Lunguya, Octavie; Msefula, Chisomo; MacLennan, Calman A; Keddy, Karen H; Smith, Anthony M; Onsare, Robert S; De Pinna, Elizabeth; Nair, Satheesh; Amos, Ben; Dougan, Gordon; Obaro, Stephen; (2016) Molecular Surveillance Identifies Multiple Transmissions of Typhoid in West Africa. PLoS neglected tropical diseases, 10 (9). e0004781-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004781

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Jones-Dias, Daniela; Clemente, Lurdes; Egas, Conceição; Froufe, Hugo; Sampaio, Daniel A; Vieira, Luís; Fookes, Maria; Thomson, Nicholas R; Manageiro, Vera; Caniça, Manuela; (2016) Salmonella Enteritidis Isolate Harboring Multiple Efflux Pumps and Pathogenicity Factors, Shows Absence of O Antigen Polymerase Gene. FRONTIERS IN MICROBIOLOGY, 7 (AUG). 1130-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.01130

Kangoye, David Tiga; Noor, Abdisalan; Midega, Janet; Mwongeli, Joyce; Mkabili, Dora; Mogeni, Polycarp; Kerubo, Christine; Akoo, Pauline; Mwangangi, Joseph; Drakeley, Chris; +3 more... Marsh, Kevin; Bejon, Philip; Njuguna, Patricia; (2016) Malaria hotspots defined by clinical malaria, asymptomatic carriage, PCR and vector numbers in a low transmission area on the Kenyan Coast. Malaria journal, 15 (1). 213-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1260-3

Kanji, Akbar; Hasan, Rumina; Zaver, Ambreen; Ali, Asho; Imtiaz, Kehkashan; Ashraf, Mussarat; Clark, Taane G; McNerney, Ruth; Shafiq, Samreen; Hasan, Zahra; (2016) Alternate efflux pump mechanism may contribute to drug resistance in extensively drug-resistant isolates of Mycobacterium tuberculosis. International journal of mycobacteriology, 5 Supp. S97-S98. ISSN 2212-5531 DOI: https://doi.org/10.1016/j.ijmyco.2016.09.064

Kannan, Yashaswini; Perez-Lloret, Jimena; Li, Yanda; Entwistle, Lewis J; Khoury, Hania; Papoutsopoulou, Stamatia; Mahmood, Radma; Mansour, Nuha R; Ching-Cheng Huang, Stanley; Pearce, Edward J; +3 more... Pedro S de Carvalho, Luiz; Ley, Steven C; Wilson, Mark S; (2016) TPL-2 Regulates Macrophage Lipid Metabolism and M2 Differentiation to Control TH2-Mediated Immunopathology. PLoS pathogens, 12 (8). e1005783-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1005783

Karlsson, Stefan L; Thomson, Nicholas; Mutreja, Ankur; Connor, Thomas; Sur, Dipika; Ali, Mohammad; Clemens, John; Dougan, Gordon; Holmgren, Jan; Lebens, Michael; (2016) Retrospective Analysis of Serotype Switching of Vibrio cholerae O1 in a Cholera Endemic Region Shows It Is a Non-random Process. PLoS neglected tropical diseases, 10 (10). e0005044-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005044

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Kavishe, Reginald A; Kaaya, Robert D; Nag, Sidsel; Krogsgaard, Camilla; Notland, Jakob Ginsbak; Kavishe, Adellaida A; Ishengoma, Deus; Roper, Cally; Alifrangis, Michael; (2016) Molecular monitoring of Plasmodium falciparum super-resistance to sulfadoxine-pyrimethamine in Tanzania. Malaria journal, 15 (1). 335-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1387-2

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Khan, Mishal S; Fletcher, Helen; London School of Hygiene and Tropical Medicine TB Centre Steerin; Coker, Richard; (2016) Investments in tuberculosis research - what are the gaps? BMC medicine, 14 (1). 123-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-016-0644-0

Khan, Nazma Habib; Bari, Arfan Ul; Hashim, Rizwan; Khan, Inamullah; Muneer, Akhtar; Shah, Akram; Wahid, Sobia; Yardley, Vanessa; O'Neil, Brighid; Sutherland, Colin J; (2016) Cutaneous Leishmaniasis in Khyber Pakhtunkhwa Province of Pakistan: Clinical Diversity and Species-Level Diagnosis. The American journal of tropical medicine and hygiene, 95 (5). pp. 1106-1114. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.16-0343

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Kim, Jung-Yeon; Goo, Youn-Kyoung; Zo, Young-Gun; Ji, So-Young; Trimarsanto, Hidayat; To, Sheren; Clark, Taane G; Price, Ric N; Auburn, Sarah; (2016) Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years. PloS one, 11 (3). e0151514-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0151514

Kishore, Kranti G; Ghashghaei, Ouldouz; Estarellas, Carolina; Mestre, M Mar; Monturiol, Cristina; Kielland, Nicola; Kelly, John M; Francisco, Amanda Fortes; Jayawardhana, Shiromani; Muñoz-Torrero, Diego; +4 more... Pérez, Belén; Luque, F Javier; Gámez-Montaño, Rocío; Lavilla, Rodolfo; (2016) Insertion of Isocyanides into N-Si Bonds: Multicomponent Reactions with Azines Leading to Potent Antiparasitic Compounds. Angewandte Chemie, 55 (31). pp. 8994-8998. ISSN 0044-8249 DOI: https://doi.org/10.1002/anie.201604109

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Larrouy-Maumus, Gerald; Clements, Abigail; Filloux, Alain; McCarthy, Ronan R; Mostowy, Serge; (2016) Direct detection of lipid A on intact Gram-negative bacteria by MALDI-TOF mass spectrometry. JOURNAL OF MICROBIOLOGICAL METHODS, 120. pp. 68-71. ISSN 0167-7012 DOI: https://doi.org/10.1016/j.mimet.2015.12.004

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Lee, I Russel; Molton, James S; Wyres, Kelly L; Gorrie, Claire; Wong, Jocelyn; Hoh, Chu Han; Teo, Jeanette; Kalimuddin, Shirin; Lye, David C; Archuleta, Sophia; +2 more... Holt, Kathryn E; Gan, Yunn-Hwen; (2016) Differential host susceptibility and bacterial virulence factors driving Klebsiella liver abscess in an ethnically diverse population. SCIENTIFIC REPORTS, 6 (1). 29316-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep29316

Lehloenya, Rannakoe J; Dlamini, Sipho; Muloiwa, Rudzani; Kakande, Betty; Ngwanya, Mzudumile R; Todd, Gail; Dheda, Keertan; (2016) Therapeutic Trial of Rifabutin After Rifampicin-Associated DRESS Syndrome in Tuberculosis-Human Immunodeficiency Virus Coinfected Patients. OPEN FORUM INFECTIOUS DISEASES, 3 (3). ofw130-. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofw130

Lewis, Michael D; Francisco, Amanda Fortes; Taylor, Martin C; Jayawardhana, Shiromani; Kelly, John M; (2016) Host and parasite genetics shape a link between Trypanosoma cruzi infection dynamics and chronic cardiomyopathy. Cellular microbiology, 18 (10). pp. 1429-1443. ISSN 1462-5814 DOI: https://doi.org/10.1111/cmi.12584

Lewis, Michael D; Kelly, John M; (2016) Putting Infection Dynamics at the Heart of Chagas Disease. Trends in parasitology, 32 (11). pp. 899-911. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2016.08.009

Li, Y; Bossé, JT; Williamson, SM; Maskell, DJ; Tucker, AW; Wren, BW; Rycroft, AN; Langford, PR; BRADP1T Consortium; (2016) Actinobacillus pleuropneumoniae serovar 8 predominates in England and Wales. The Veterinary record, 179 (11). 276-. ISSN 0042-4900 DOI: https://doi.org/10.1136/vr.103820

Lin, Wenwei; de Sessions, Paola Florez; Teoh, Garrett Hor Keong; Mohamed, Ahmad Naim Nazri; Zhu, Yuan O; Koh, Vanessa Hui Qi; Ang, Michelle Lay Teng; Dedon, Peter C; Hibberd, Martin Lloyd; Alonso, Sylvie; (2016) Transcriptional Profiling of Mycobacterium tuberculosis Exposed to In Vitro Lysosomal Stress. Infection and immunity, 84 (9). pp. 2505-2523. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00072-16 Full text not available from this repository.

Lobato-Márquez, Damián; Mostowy, Serge; (2016) Septins recognize micron-scale membrane curvature. JOURNAL OF CELL BIOLOGY, 213 (1). pp. 5-6. ISSN 0021-9525 DOI: https://doi.org/10.1083/jcb.201603063

Loh, Jin Phang; Gao, Qiu Han Christine; Lee, Vernon J; Tetteh, Kevin; Drakeley, Chris; (2016) Utility of COX1 phylogenetics to differentiate between locally acquired and imported Plasmodium knowlesi infections in Singapore. Singapore medical journal, 57 (12). pp. 686-689. ISSN 0037-5675 DOI: https://doi.org/10.11622/smedj.2016016 Item availability may be restricted.

Lulla, Valeria; Lulla, Aleksei; Wernike, Kerstin; Aebischer, Andrea; Beer, Martin; Roy, Polly; (2016) Assembly of Replication-Incompetent African Horse Sickness Virus Particles: Rational Design of Vaccines for All Serotypes. Journal of virology, 90 (16). pp. 7405-7414. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.00548-16

Lynch, Caroline A; Cook, Jackie; Nanyunja, Sarah; Bruce, Jane; Bhasin, Amit; Drakeley, Chris; Roper, Cally; Pearce, Richard; Rwakimari, John B; Abeku, Tarekegn A; +2 more... Corran, Patrick; Cox, Jonathan; (2016) Application of Serological Tools and Spatial Analysis to Investigate Malaria Transmission Dynamics in Highland Areas of Southwest Uganda. The American journal of tropical medicine and hygiene, 94 (6). pp. 1251-1258. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.15-0653

Maishman, Luke; Obado, Samson O; Alsford, Sam; Bart, Jean-Mathieu; Chen, Wei-Ming; Ratushny, Alexander V; Navarro, Miguel; Horn, David; Aitchison, John D; Chait, Brian T; +2 more... Rout, Michael P; Field, Mark C; (2016) Co-dependence between trypanosome nuclear lamina components in nuclear stability and control of gene expression. Nucleic acids research, 44 (22). pp. 10554-10570. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkw751

Makendi, Carine; Page, Andrew J; Wren, Brendan W; Le Thi Phuong, Tu; Clare, Simon; Hale, Christine; Goulding, David; Klemm, Elizabeth J; Pickard, Derek; Okoro, Chinyere; +10 more... Hunt, Martin; Thompson, Corinne N; Phu Huong Lan, Nguyen; Tran Do Hoang, Nhu; Thwaites, Guy E; Le Hello, Simon; Brisabois, Anne; Weill, François-Xavier; Baker, Stephen; Dougan, Gordon; (2016) A Phylogenetic and Phenotypic Analysis of Salmonella enterica Serovar Weltevreden, an Emerging Agent of Diarrheal Disease in Tropical Regions. PLoS neglected tropical diseases, 10 (2). e0004446-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004446

Malamba, Samuel S; Muyinda, Herbert; Spittal, Patricia M; Ekwaru, John P; Kiwanuka, Noah; Ogwang, Martin D; Odong, Patrick; Kitandwe, Paul K; Katamba, Achilles; Jongbloed, Kate; +4 more... Sewankambo, Nelson K; Kinyanda, Eugene; Blair, Alden; Schechter, Martin T; (2016) "The Cango Lyec Project - Healing the Elephant": HIV related vulnerabilities of post-conflict affected populations aged 13-49 years living in three Mid-Northern Uganda districts. BMC INFECTIOUS DISEASES, 16 (1). 690-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-2030-0

Manigart, Olivier; Okeakpu, Jacinta; Odutola, Aderonke; Jarju, Sheikh; Foster-Nyarko, Ebenezer; Diallo, Kanny; Roca, Anna; Kampmann, Beate; D'Alessandro, Umberto; Sow, Samba; +6 more... Antonio, Martin; Maiden, Martin J; Borrow, Ray; Stuart, James M; Trotter, Caroline L; Greenwood, Brian M; (2016) Alternative Molecular Methods for Improved Detection of Meningococcal Carriage and Measurement of Bacterial Density. Journal of clinical microbiology, 54 (11). pp. 2743-2748. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01428-16

Manin, Benny O; Ferguson, Heather M; Vythilingam, Indra; Fornace, Kim; William, Timothy; Torr, Steve J; Drakeley, Chris; Chua, Tock H; (2016) Investigating the Contribution of Peri-domestic Transmission to Risk of Zoonotic Malaria Infection in Humans. PLoS neglected tropical diseases, 10 (10). e0005064-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005064

Mansour, Nuha R; Paveley, Ross; Gardner, J Mark F; Bell, Andrew S; Parkinson, Tanya; Bickle, Quentin; (2016) High Throughput Screening Identifies Novel Lead Compounds with Activity against Larval, Juvenile and Adult Schistosoma mansoni. PLoS neglected tropical diseases, 10 (4). e0004659-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004659

Manu, Alexander; Hill, Zelee; Ten Asbroek, Augustinus Ha; Soremekun, Seyi; Weobong, Benedict; Gyan, Thomas; Tawiah-Agyemang, Charlotte; Danso, Samuel; Amenga-Etego, Seeba; Owusu-Agyei, Seth; +1 more... Kirkwood, Betty R; (2016) Increasing access to care for sick newborns: evidence from the Ghana Newhints cluster-randomised controlled trial. BMJ open, 6 (6). e008107-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2015-008107

Marques, Joana; Valle-Delgado, Juan José; Urbán, Patricia; Baró, Elisabet; Prohens, Rafel; Mayor, Alfredo; Cisteró, Pau; Delves, Michael; Sinden, Robert E; Grandfils, Christian; +3 more... de Paz, José L; García-Salcedo, José A; Fernàndez-Busquets, Xavier; (2016) Adaptation of targeted nanocarriers to changing requirements in antimalarial drug delivery. Nanomedicine, 13 (2). pp. 515-525. ISSN 1549-9634 DOI: https://doi.org/10.1016/j.nano.2016.09.010

Martinón-Torres, Federico; Png, Eileen; Khor, Chiea Chuen; Davila, Sonia; Wright, Victoria J; Sim, Kar Seng; Vega, Ana; Fachal, Laura; Inwald, David; Nadel, Simon; +18 more... Carrol, Enitan D; Martinón-Torres, Nazareth; Alonso, Sonia Marcos; Carracedo, Angel; Morteruel, Elvira; López-Bayón, Julio; Torre, Andrés Concha; Monge, Cristina Calvo; de Aguilar, Pilar Azcón González; Torné, Elisabeth Esteban; Martínez-Padilla, María Del Carmen; Martinón-Sánchez, José María; Levin, Michael; Hibberd, Martin L; Salas, Antonio; ESIGEM network; ESPID meningococcal consortium – UK; EUCLIDS consortium members - Imperial College London (www.euclid; (2016) Natural resistance to Meningococcal Disease related to CFH loci: Meta-analysis of genome-wide association studies. Scientific reports, 6 (1). 35842-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep35842

Mascotti, Maria Laura; Juri Ayub, Maximiliano; Furnham, Nicholas; Thornton, Janet M; Laskowski, Roman A; (2016) Chopping and Changing: the Evolution of the Flavin-dependent Monooxygenases. Journal of molecular biology, 428 (15). pp. 3131-3146. ISSN 0022-2836 DOI: https://doi.org/10.1016/j.jmb.2016.07.003

Mather, Alison E; Lawson, Becki; de Pinna, Elizabeth; Wigley, Paul; Parkhill, Julian; Thomson, Nicholas R; Page, Andrew J; Holmes, Mark A; Paterson, Gavin K; (2016) Genomic Analysis of Salmonella enterica Serovar Typhimurium from Wild Passerines in England and Wales. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82 (22). pp. 6728-6735. ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.01660-16

Mawa, Patrice Akusa; Webb, Emily L; Filali-Mouhim, Abdelali; Nkurunungi, Gyaviira; Sekaly, Rafick-Pierre; Lule, Swaib Abubaker; Prentice, Sarah; Nash, Stephen; Dockrell, Hazel M; Elliott, Alison M; +1 more... Cose, Stephen; (2016) Maternal BCG scar is associated with increased infant proinflammatory immune responses. Vaccine, 35 (2). pp. 273-282. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.11.079

Mbugi, Erasto V; Katale, Bugwesa Z; Streicher, Elizabeth M; Keyyu, Julius D; Kendall, Sharon L; Dockrell, Hazel M; Michel, Anita L; Rweyemamu, Mark M; Warren, Robin M; Matee, Mecky I; +3 more... van Helden, Paul D; Couvin, David; Rastogi, Nalin; (2016) Mapping of Mycobacterium tuberculosis Complex Genetic Diversity Profiles in Tanzania and Other African Countries. PloS one, 11 (5). e0154571-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0154571

McCarthy, Alex J; Negus, David; Martin, Patricia; Pechincha, Catarina; Oswald, Eric; Stabler, Richard A; Taylor, Peter W; (2016) Pathoadaptive Mutations of Escherichia coli K1 in Experimental Neonatal Systemic Infection. PloS one, 11 (11). e0166793-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0166793

McNally, Alan; Thomson, Nicholas R; Reuter, Sandra; Wren, Brendan W; (2016) 'Add, stir and reduce': Yersinia spp. as model bacteria for pathogen evolution. Nature reviews Microbiology, 14 (3). pp. 177-190. ISSN 1740-1526 DOI: https://doi.org/10.1038/nrmicro.2015.29 Full text not available from this repository.

McNerney, Ruth; Clark, Taane G; Campino, Susana; Rodrigues, Camilla; Dolinger, David; Smith, Liezel; Cabibbe, Andrea M; Dheda, Keertan; Schito, Marco; (2016) Removing the bottleneck in whole genome sequencing of Mycobacterium tuberculosis for rapid drug resistance analysis: a call to action. International journal of infectious diseases, 56. pp. 130-135. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2016.11.422

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Pham Thanh, Duy; Karkey, Abhilasha; Dongol, Sabina; Ho Thi, Nhan; Thompson, Corinne N; Rabaa, Maia A; Arjyal, Amit; Holt, Kathryn E; Wong, Vanessa; Tran Vu Thieu, Nga; +13 more... Voong Vinh, Phat; Ha Thanh, Tuyen; Pradhan, Ashish; Shrestha, Saroj Kumar; Gajurel, Damoder; Pickard, Derek; Parry, Christopher M; Dougan, Gordon; Wolbers, Marcel; Dolecek, Christiane; Thwaites, Guy E; Basnyat, Buddha; Baker, Stephen; (2016) A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure. eLife, 5 (MARCH2). e14003-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.14003

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Pham Thanh, Duy; Thompson, Corinne N; Rabaa, Maia A; Sona, Soeng; Sopheary, Sun; Kumar, Varun; Moore, Catrin; Tran Vu Thieu, Nga; Wijedoru, Lalith; Holt, Kathryn E; +8 more... Wong, Vanessa; Pickard, Derek; Thwaites, Guy E; Day, Nicholas; Dougan, Gordon; Turner, Paul; Parry, Christopher M; Baker, Stephen; (2016) The Molecular and Spatial Epidemiology of Typhoid Fever in Rural Cambodia. PLoS neglected tropical diseases, 10 (6). e0004785-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004785

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Phillips, Patrick PJ; Fletcher, Helen A; Abubakar, Ibrahim; Lipman, Marc CI; McHugh, Timothy D; (2016) World TB Day 2016: an interview with leading experts in tuberculosis research. BMC medicine, 14 (1). 55-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-016-0591-9

Pollard, Dominic J; Young, Joanna C; Covarelli, Valentina; Herrera-León, Silvia; Connor, Thomas R; Fookes, Maria; Walker, Danielle; Echeita, Aurora; Thomson, Nicholas R; Berger, Cedric N; +1 more... Frankel, Gad; (2016) The Type III Secretion System Effector SeoC of Salmonella enterica subsp. salamae and S. enterica subsp. arizonae ADP-Ribosylates Src and Inhibits Opsonophagocytosis. Infection and immunity, 84 (12). pp. 3618-3628. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.00704-16

Polycarpou, Anastasia; Holland, Martin J; Karageorgiou, Ioannis; Eddaoudi, Ayad; Walker, Stephen L; Willcocks, Sam; Lockwood, Diana NJ; (2016) Mycobacterium leprae Activates Toll-Like Receptor-4 Signaling and Expression on Macrophages Depending on Previous Bacillus Calmette-Guerin Vaccination. Frontiers in cellular and infection microbiology, 6 (JUL). 72-. ISSN 2235-2988 DOI: https://doi.org/10.3389/fcimb.2016.00072

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Rao, Pavitra N; Uplekar, Swapna; Kayal, Sriti; Mallick, Prashant K; Bandyopadhyay, Nabamita; Kale, Sonal; Singh, Om P; Mohanty, Akshaya; Mohanty, Sanjib; Wassmer, Samuel C; +1 more... Carlton, Jane M; (2016) A Method for Amplicon Deep Sequencing of Drug Resistance Genes in Plasmodium falciparum Clinical Isolates from India. Journal of clinical microbiology, 54 (6). pp. 1500-1511. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00235-16

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Refrégier, Guislaine; Abadia, Edgar; Matsumoto, Tomoshige; Ano, Hiromi; Takashima, Tetsuya; Tsuyuguchi, Izuo; Aktas, Elif; Cömert, Füsun; Gomgnimbou, Michel Kireopori; Panaiotov, Stefan; +6 more... Phelan, Jody; Coll, Francesc; McNerney, Ruth; Pain, Arnab; Clark, Taane G; Sola, Christophe; (2016) Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor. Infection, genetics and evolution, 45. pp. 461-473. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2016.10.009

Rek, John; Katrak, Shereen; Obasi, Hannah; Nayebare, Patience; Katureebe, Agaba; Kakande, Elijah; Arinaitwe, Emmanuel; Nankabirwa, Joaniter I; Jagannathan, Prasanna; Drakeley, Chris; +7 more... Staedke, Sarah G; Smith, David L; Bousema, Teun; Kamya, Moses; Rosenthal, Philip J; Dorsey, Grant; Greenhouse, Bryan; (2016) Characterizing microscopic and submicroscopic malaria parasitaemia at three sites with varied transmission intensity in Uganda. Malaria journal, 15 (1). 470-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1519-8

Rhodes, Sophie J; Zelmer, Andrea; Knight, Gwenan M; Prabowo, Satria Arief; Stockdale, Lisa; Evans, Thomas G; Lindenstrøm, Thomas; White, Richard G; Fletcher, Helen; (2016) The TB vaccine H56+IC31 dose-response curve is peaked not saturating: Data generation for new mathematical modelling methods to inform vaccine dose decisions. Vaccine, 34 (50). pp. 6285-6291. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.10.060

Ritchie, Scott C; Watts, Stephen; Fearnley, Liam G; Holt, Kathryn E; Abraham, Gad; Inouye, Michael; (2016) A Scalable Permutation Approach Reveals Replication and Preservation Patterns of Network Modules in Large Datasets. CELL SYSTEMS, 3 (1). pp. 71-82. ISSN 2405-4712 DOI: https://doi.org/10.1016/j.cels.2016.06.012

Roberts, Chrissy H; Shaw, Helen Alexandra; Ferguson, Natalie; Holland, Mark; Wren, Brendan W; Stabler, Richard A; (2016) Draft Genome Sequence of Robinsoniella peoriensis 6600698, a Confounder of Clostridium difficile Diagnosis. Genome announcements, 4 (6). ISSN 2169-8287 DOI: https://doi.org/10.1128/genomeA.01275-16

Robins-Browne, Roy M; Holt, Kathryn E; Ingle, Danielle J; Hocking, Dianna M; Yang, Ji; Tauschek, Marija; (2016) Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing? FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 6 (NOV). 141-. ISSN 2235-2988 DOI: https://doi.org/10.3389/fcimb.2016.00141

Rodriguez-Barraquer, Isabel; Arinaitwe, Emmanuel; Jagannathan, Prasanna; Boyle, Michelle J; Tappero, Jordan; Muhindo, Mary; Kamya, Moses R; Dorsey, Grant; Drakeley, Chris; Ssewanyana, Isaac; +2 more... Smith, David L; Greenhouse, Bryan; (2016) Quantifying Heterogeneous Malaria Exposure and Clinical Protection in a Cohort of Ugandan Children. The Journal of infectious diseases, 214 (7). pp. 1072-1080. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiw301 Full text not available from this repository.

Sadlova, Jovana; Myskova, Jitka; Lestinova, Tereza; Votypka, Jan; Yeo, Matthew; Volf, Petr; (2016) Leishmania donovani development in Phlebotomus argentipes: comparison of promastigote- and amastigote-initiated infections. Parasitology, 144 (4). pp. 403-410. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182016002067

Sayes, Fadel; Pawlik, Alexandre; Frigui, Wafa; Gröschel, Matthias I; Crommelynck, Samuel; Fayolle, Catherine; Cia, Felipe; Bancroft, Gregory J; Bottai, Daria; Leclerc, Claude; +2 more... Brosch, Roland; Majlessi, Laleh; (2016) CD4+ T Cells Recognizing PE/PPE Antigens Directly or via Cross Reactivity Are Protective against Pulmonary Mycobacterium tuberculosis Infection. PLoS pathogens, 12 (7). e1005770-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1005770

Schultz, Mark B; Pham Thanh, Duy; Tran Do Hoan, Nhu; Wick, Ryan R; Ingle, Danielle J; Hawkey, Jane; Edwards, David J; Kenyon, Johanna J; Phu Huong Lan, Nguyen; Campbell, James I; +6 more... Thwaites, Guy; Thi Khanh Nhu, Nguyen; Hall, Ruth M; Fournier-Level, Alexandre; Baker, Stephen; Holt, Kathryn E; (2016) Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward. MICROBIAL GENOMICS, 2 (3). e000050-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000050

Senghore, Madikay; Bayliss, Sion C; Kwambana-Adams, Brenda A; Foster-Nyarko, Ebenezer; Manneh, Jainaba; Dione, Michel; Badji, Henry; Ebruke, Chinelo; Doughty, Emma L; Thorpe, Harry A; +9 more... Jasinska, Anna J; Schmitt, Christopher A; Cramer, Jennifer D; Turner, Trudy R; Weinstock, George; Freimer, Nelson B; Pallen, Mark J; Feil, Edward J; Antonio, Martin; (2016) Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing. Applied and environmental microbiology, 82 (19). pp. 5910-5917. ISSN 0099-2240 DOI: https://doi.org/10.1128/AEM.01496-16

Sepúlveda, Nuno; Morais, Cristiane Guimarães; Mourão, Luiza Carvalho; Freire, Matheus França; Fontes, Cor Jesus F; Lacerda, Marcus Vinícius G; Drakeley, Chris J; Braga, Érika Martins; (2016) Allele-specific antibodies to Plasmodium vivax merozoite surface protein-1: prevalence and inverse relationship to haemoglobin levels during infection. Malaria journal, 15 (1). 559-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1612-z

Shah, Anand; Kannambath, Shichina; Herbst, Susanne; Rogers, Andrew; Soresi, Simona; Carby, Martin; Reed, Anna; Mostowy, Serge; Fisher, Matthew C; Shaunak, Sunil; +1 more... Armstrong-James, Darius P; (2016) Calcineurin Orchestrates Lateral Transfer of Aspergillus fumigatus during Macrophage Cell Death. AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 194 (9). pp. 1127-1139. ISSN 1073-449X DOI: https://doi.org/10.1164/rccm.201601-0070OC

Shender, Lisa A; Lewis, Michael D; Rejmanek, Daniel; Mazet, Jonna AK; (2016) Molecular Diversity of Trypanosoma cruzi Detected in the Vector Triatoma protracta from California, USA. PLoS neglected tropical diseases, 10 (1). e0004291-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004291

Sherling, Emma S; van Ooij, Christiaan; (2016) Host cell remodeling by pathogens: the exomembrane system in Plasmodium-infected erythrocytes. FEMS MICROBIOLOGY REVIEWS, 40 (5). pp. 701-721. ISSN 0168-6445 DOI: https://doi.org/10.1093/femsre/fuw016

Shimizu, Chisato; Eleftherohorinou, Hariklia; Wright, Victoria J; Kim, Jihoon; Alphonse, Martin P; Perry, James C; Cimaz, Rolando; Burgner, David; Dahdah, Nagib; Hoang, Long T; +17 more... Khor, Chiea Chuen; Salgado, Andrea; Tremoulet, Adriana H; Davila, Sonia; Kuijpers, Taco W; Hibberd, Martin L; Johnson, Todd A; Takahashi, Atsushi; Tsunoda, Tatsuhiko; Kubo, Michiaki; Tanaka, Toshihiro; Onouchi, Yoshihiro; Yeung, Rae SM; Coin, Lachlan JM; Levin, Michael; Burns, Jane C; International Kawasaki Disease Genetics Consortium; (2016) Genetic Variation in the SLC8A1 Calcium Signaling Pathway Is Associated With Susceptibility to Kawasaki Disease and Coronary Artery Abnormalities. Circulation Cardiovascular genetics, 9 (6). pp. 559-568. ISSN 1942-325X DOI: https://doi.org/10.1161/CIRCGENETICS.116.001533

Sim, Shuzhen; Hibberd, Martin L; (2016) Caenorhabditis elegans susceptibility to gut Enterococcus faecalis infection is associated with fat metabolism and epithelial junction integrity. BMC microbiology, 16 (1). 6-. ISSN 1471-2180 DOI: https://doi.org/10.1186/s12866-016-0624-8

Sim, Shuzhen; Hibberd, Martin L; (2016) Genomic approaches for understanding dengue: insights from the virus, vector, and host. Genome Biol, 17 (1). 38-. ISSN 1474-760X DOI: https://doi.org/10.1186/s13059-016-0907-2

Sirianni, Andrea; Krokowski, Sina; Lobato-Márquez, Damián; Buranyi, Stephen; Pfanzelter, Julia; Galea, Dieter; Willis, Alexandra; Culley, Siân; Henriques, Ricardo; Larrouy-Maumus, Gerald; +4 more... Hollinshead, Michael; Sancho-Shimizu, Vanessa; Way, Michael; Mostowy, Serge; (2016) Mitochondria mediate septin cage assembly to promote autophagy of Shigella. EMBO REPORTS, 17 (7). pp. 1029-1043. ISSN 1469-221X DOI: https://doi.org/10.15252/embr.201541832

Skipp, Paul JS; Hughes, Chris; McKenna, Thérèse; Edwards, Richard; Langridge, James; Thomson, Nicholas R; Clarke, Ian N; (2016) Quantitative Proteomics of the Infectious and Replicative Forms of Chlamydia trachomatis. PLOS ONE, 11 (2). e0149011-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0149011

Smith, Steven G; Zelmer, Andrea; Blitz, Rose; Fletcher, Helen A; Dockrell, Hazel M; (2016) Polyfunctional CD4 T-cells correlate with in vitro mycobacterial growth inhibition following Mycobacterium bovis BCG-vaccination of infants. Vaccine, 34 (44). pp. 5298-5305. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.09.002

Sola, Irene; Artigas, Albert; Taylor, Martin C; Pérez-Areales, F Javier; Viayna, Elisabet; Clos, M Victòria; Pérez, Belén; Wright, Colin W; Kelly, John M; Muñoz-Torrero, Diego; (2016) Synthesis and biological evaluation of N-cyanoalkyl-, N-aminoalkyl-, and N-guanidinoalkyl-substituted 4-aminoquinoline derivatives as potent, selective, brain permeable antitrypanosomal agents. Bioorganic & medicinal chemistry, 24 (21). pp. 5162-5171. ISSN 0968-0896 DOI: https://doi.org/10.1016/j.bmc.2016.08.036

St Laurent, Brandyce; Cooke, Mary; Krishnankutty, Sindhu M; Asih, Puji; Mueller, John D; Kahindi, Samuel; Ayoma, Elizabeth; Oriango, Robin M; Thumloup, Julie; Drakeley, Chris; +4 more... Cox, Jonathan; Collins, Frank H; Lobo, Neil F; Stevenson, Jennifer C; (2016) Molecular Characterization Reveals Diverse and Unknown Malaria Vectors in the Western Kenyan Highlands. The American journal of tropical medicine and hygiene, 94 (2). pp. 327-335. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.15-0562

Stone, Will JR; Dantzler, Kathleen W; Nilsson, Sandra K; Drakeley, Chris J; Marti, Matthias; Bousema, Teun; Rijpma, Sanna R; (2016) Naturally acquired immunity to sexual stage P. falciparum parasites. Parasitology, 143 (2). pp. 187-198. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182015001341 Full text not available from this repository.

Sullivan, Richard T; Ssewanyana, Isaac; Wamala, Samuel; Nankya, Felistas; Jagannathan, Prasanna; Tappero, Jordan W; Mayanja-Kizza, Harriet; Muhindo, Mary K; Arinaitwe, Emmanuel; Kamya, Moses; +5 more... Dorsey, Grant; Feeney, Margaret E; Riley, Eleanor M; Drakeley, Chris J; Greenhouse, Bryan; (2016) Erratum to: B cell sub-types following acute malaria and associations with clinical immunity. Malaria journal, 15 (1). 188-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1236-3

Sullivan, Richard T; Ssewanyana, Isaac; Wamala, Samuel; Nankya, Felistas; Jagannathan, Prasanna; Tappero, Jordan W; Mayanja-Kizza, Harriet; Muhindo, Mary K; Arinaitwe, Emmanuel; Kamya, Moses; +6 more... Dorsey, Grant; Feeney, Margaret E; Riley, Eleanor M; Drakeley, Chris J; Greenhouse, Bryan; Sullivan, Richard; (2016) B cell sub-types following acute malaria and associations with clinical immunity. Malaria journal, 15 (1). 139-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1190-0

Sung, Cynthia; Wei, Yuan; Watanabe, Satoru; Lee, How Sung; Khoo, Yok Moi; Fan, Lu; Rathore, Abhay PS; Chan, Kitti Wing-Ki; Choy, Milly M; Kamaraj, Uma S; +11 more... Sessions, October M; Aw, Pauline; de Sessions, Paola F; Lee, Bernett; Connolly, John E; Hibberd, Martin L; Vijaykrishna, Dhanasekaran; Wijaya, Limin; Ooi, Eng Eong; Low, Jenny Guek-Hong; Vasudevan, Subhash G; (2016) Extended Evaluation of Virological, Immunological and Pharmacokinetic Endpoints of CELADEN: A Randomized, Placebo-Controlled Trial of Celgosivir in Dengue Fever Patients. PLoS neglected tropical diseases, 10 (8). e0004851-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004851

Sutherland, Colin J; (2016) Persistent Parasitism: The Adaptive Biology of Malariae and Ovale Malaria. Trends in parasitology, 32 (10). pp. 808-819. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2016.07.001 Full text not available from this repository.

Sutherland, Colin J; (2016) Rescuing artemisinin combination therapy in Africa. The Lancet Global health, 5 (1). e8-e9. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(16)30291-1

Sutton, Patrick L; Luo, Zunping; Divis, Paul CS; Friedrich, Volney K; Conway, David J; Singh, Balbir; Barnwell, John W; Carlton, Jane M; Sullivan, Steven A; (2016) Characterizing the genetic diversity of the monkey malaria parasite Plasmodium cynomolgi. Infection, genetics and evolution, 40. pp. 243-252. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2016.03.009 Full text not available from this repository.

Suárez-Esquivel, Marcela; Ruiz-Villalobos, Nazareth; Castillo-Zeledón, Amanda; Jiménez-Rojas, César; Roop Ii, R Martin; Comerci, Diego J; Barquero-Calvo, Elías; Chacón-Díaz, Carlos; Caswell, Clayton C; Baker, Kate S; +6 more... Chaves-Olarte, Esteban; Thomson, Nicholas R; Moreno, Edgardo; Letesson, Jean J; De Bolle, Xavier; Guzmán-Verri, Caterina; (2016) Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains. Frontiers in microbiology, 7 (SEP). 1557-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.01557

Takele, Y; Adem, E; Getahun, M; Tajebe, F; Kiflie, A; Hailu, A; Raynes, J; Mengesha, B; Ayele, TA; Shkedy, Z; +7 more... Lemma, M; Diro, E; Toulza, F; Modolell, M; Munder, M; Müller, I; Kropf, P; (2016) Malnutrition in Healthy Individuals Results in Increased Mixed Cytokine Profiles, Altered Neutrophil Subsets and Function. PloS one, 11 (8). e0157919-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0157919

Tanner, Rachel; O'Shea, Matthew K; Fletcher, Helen A; McShane, Helen; (2016) In vitro mycobacterial growth inhibition assays: A tool for the assessment of protective immunity and evaluation of tuberculosis vaccine efficacy. Vaccine, 34 (39). pp. 4656-4665. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.07.058

Tegazzini, Diana; Díaz, Rosario; Aguilar, Fernando; Peña, Imanol; Presa, Jesús L; Yardley, Vanessa; Martin, Julio J; Coteron, Jose M; Croft, Simon L; Cantizani, Juan; (2016) A Replicative In Vitro Assay for Drug Discovery against Leishmania donovani. Antimicrobial agents and chemotherapy, 60 (6). pp. 3524-3532. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.01781-15

Tellier, Geraldine; Lenne, Astrid; Cailliau-Maggio, Katia; Cabezas-Cruz, Alejandro; Valdes, James J; Martoriati, Alain; Aliouat, El M; Gosset, Pierre; Delaire, Baptiste; Freville, Aline; +2 more... Pierrot, Christine; Khalife, Jamal; (2016) Identification of Plasmodium falciparum Translation Initiation eIF2 beta Subunit: Direct Interaction with Protein Phosphatase Type 1. FRONTIERS IN MICROBIOLOGY, 7. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.00777

Tellier, Géraldine; Lenne, Astrid; Cailliau-Maggio, Katia; Cabezas-Cruz, Alejandro; Valdés, James J; Martoriati, Alain; Aliouat, El M; Gosset, Pierre; Delaire, Baptiste; Fréville, Aline; +2 more... Pierrot, Christine; Khalife, Jamal; (2016) Identification of Plasmodium falciparum Translation Initiation eIF2β Subunit: Direct Interaction with Protein Phosphatase Type 1. FRONTIERS IN MICROBIOLOGY, 7. 777-. ISSN 1664-302X DOI: https://doi.org/10.3389/fmicb.2016.00777

The, Hao Chung; Thanh, Duy Pham; Holt, Kathryn E; Thomson, Nicholas R; Baker, Stephen; (2016) The genomic signatures of Shigella evolution, adaptation and geographical spread. Nature reviews Microbiology, 14 (4). pp. 235-250. ISSN 1740-1526 DOI: https://doi.org/10.1038/nrmicro.2016.10 Full text not available from this repository.

Thi Khanh Nhu, Nguyen; Riordan, David W; Do Hoang Nhu, Tran; Thanh, Duy Pham; Thwaites, Guy; Huong Lan, Nguyen Phu; Wren, Brendan W; Baker, Stephen; Stabler, Richard A; (2016) The induction and identification of novel Colistin resistance mutations in Acinetobacter baumannii and their implications. Scientific reports, 6 (1). 28291-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep28291

Thomas, James A; Collins, Christine R; Das, Sujaan; Hackett, Fiona; Graindorge, Arnault; Bell, Donald; Deu, Edgar; Blackman, Michael J; (2016) Development and Application of a Simple Plaque Assay for the Human Malaria Parasite Plasmodium falciparum. PloS one, 11 (6). e0157873-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0157873

Thompson, Andrew M; O'Connor, Patrick D; Blaser, Adrian; Yardley, Vanessa; Maes, Louis; Gupta, Suman; Launay, Delphine; Martin, Denis; Franzblau, Scott G; Wan, Baojie; +3 more... Wang, Yuehong; Ma, Zhenkun; Denny, William A; (2016) Repositioning Antitubercular 6-Nitro-2,3-dihydroimidazo[2,1-b][1,3]oxazoles for Neglected Tropical Diseases: Structure-Activity Studies on a Preclinical Candidate for Visceral Leishmaniasis. Journal of medicinal chemistry, 59 (6). pp. 2530-2550. ISSN 0022-2623 DOI: https://doi.org/10.1021/acs.jmedchem.5b01699

Tientcheu, Leopold D; Bell, Andrew; Secka, Oumie; Ayorinde, Abigail; Otu, Jacob; Garton, Nathalie J; Sutherland, Jayne S; Ota, Martin O; Antonio, Martin; Dockrell, HM; +2 more... Kampmann, Beate; Barer, Michael R; (2016) Association of slow recovery of Mycobacterium africanum-infected patients posttreatment with high content of Persister-Like bacilli in pretreatment sputum. International journal of mycobacteriology, 5 Supp. S99-S100. ISSN 2212-5531 DOI: https://doi.org/10.1016/j.ijmyco.2016.09.033

Tientcheu, Leopold D; Haks, Mariëlle C; Agbla, Schadrac C; Sutherland, Jayne S; Adetifa, Ifedayo M; Donkor, Simon; Quinten, Edwin; Daramy, Mohammed; Antonio, Martin; Kampmann, Beate; +3 more... Ottenhoff, Tom HM; Dockrell, Hazel M; Ota, Martin O; (2016) Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. PLoS neglected tropical diseases, 10 (5). e0004701-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004701

Toleman, Michelle S; Reuter, Sandra; Coll, Francesc; Harrison, Ewan M; Blane, Beth; Brown, Nicholas M; Török, M Estée; Parkhill, Julian; Peacock, Sharon J; (2016) Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of England. The Journal of infectious diseases, 214 (3). pp. 447-453. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiw166

Toleman, Michelle S; Reuter, Sandra; Coll, Francesc; Harrison, Ewan M; Peacock, Sharon J; (2016) Local Persistence of Novel MRSA Lineage after Hospital Ward Outbreak, Cambridge, UK, 2011-2013. Emerging infectious diseases, 22 (9). pp. 1658-1659. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2209.151100

Torondel, Belen; Ensink, Jeroen HJ; Gundogdu, Ozan; Ijaz, Umer Zeeshan; Parkhill, Julian; Abdelahi, Faraji; Nguyen, Viet-Anh; Sudgen, Steven; Gibson, Walter; Walker, Alan W; +1 more... Quince, Christopher; (2016) Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines. Microbial biotechnology, 9 (2). pp. 209-223. ISSN 1751-7915 DOI: https://doi.org/10.1111/1751-7915.12334

Torraca, Vincenzo; Mostowy, Serge; (2016) Septins and Bacterial Infection. FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 4 (NOV). 127-. ISSN 2296-634X DOI: https://doi.org/10.3389/fcell.2016.00127

Tosas Auguet, Olga; Betley, Jason R; Stabler, Richard A; Patel, Amita; Ioannou, Avgousta; Marbach, Helene; Hearn, Pasco; Aryee, Anna; Goldenberg, Simon D; Otter, Jonathan A; +7 more... Desai, Nergish; Karadag, Tacim; Grundy, Chris; Gaunt, Michael W; Cooper, Ben S; Edgeworth, Jonathan D; Kypraios, Theodore; (2016) Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. PLoS medicine, 13 (1). e1001944-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001944

Vainieri, Maria L; Blagborough, Andrew M; MacLean, Adam L; Haltalli, Myriam LR; Ruivo, Nicola; Fletcher, Helen A; Stumpf, Michael PH; Sinden, Robert E; Celso, Cristina Lo; (2016) Systematic tracking of altered haematopoiesis during sporozoite-mediated malaria development reveals multiple response points. Open biology, 6 (6). p. 160038. ISSN 2046-2441 DOI: https://doi.org/10.1098/rsob.160038

Valiente, Esmeralda; Bouché, Laura; Hitchen, Paul; Faulds-Pain, Alexandra; Songane, Mario; Dawson, Lisa F; Donahue, Elizabeth; Stabler, Richard A; Panico, Maria; Morris, Howard R; +4 more... Bajaj-Elliott, Mona; Logan, Susan M; Dell, Anne; Wren, Brendan W; (2016) Role of Glycosyltransferases Modifying Type B Flagellin of Emerging Hypervirulent Clostridium difficile Lineages and Their Impact on Motility and Biofilm Formation. The Journal of biological chemistry, 291 (49). pp. 25450-25461. ISSN 0021-9258 DOI: https://doi.org/10.1074/jbc.M116.749523

Van Bocxlaer, Katrien; Yardley, Vanessa; Murdan, Sudaxshina; Croft, Simon L; (2016) Drug permeation and barrier damage in Leishmania-infected mouse skin. The Journal of antimicrobial chemotherapy, 71 (6). pp. 1578-1585. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkw012 Full text not available from this repository.

Van Bocxlaer, Katrien; Yardley, Vanessa; Murdan, Sudaxshina; Croft, Simon L; (2016) Topical formulations of miltefosine for cutaneous leishmaniasis in a BALB/c mouse model. The Journal of pharmacy and pharmacology, 68 (7). pp. 862-872. ISSN 0022-3573 DOI: https://doi.org/10.1111/jphp.12548

Van Voorhis, Wesley C; Adams, John H; Adelfio, Roberto; Ahyong, Vida; Akabas, Myles H; Alano, Pietro; Alday, Aintzane; Alemán Resto, Yesmalie; Alsibaee, Aishah; Alzualde, Ainhoa; +177 more... Andrews, Katherine T; Avery, Simon V; Avery, Vicky M; Ayong, Lawrence; Baker, Mark; Baker, Stephen; Ben Mamoun, Choukri; Bhatia, Sangeeta; Bickle, Quentin; Bounaadja, Lotfi; Bowling, Tana; Bosch, Jürgen; Boucher, Lauren E; Boyom, Fabrice F; Brea, Jose; Brennan, Marian; Burton, Audrey; Caffrey, Conor R; Camarda, Grazia; Carrasquilla, Manuela; Carter, Dee; Belen Cassera, Maria; Chih-Chien Cheng, Ken; Chindaudomsate, Worathad; Chubb, Anthony; Colon, Beatrice L; Colón-López, Daisy D; Corbett, Yolanda; Crowther, Gregory J; Cowan, Noemi; D'Alessandro, Sarah; Le Dang, Na; Delves, Michael; DeRisi, Joseph L; Du, Alan Y; Duffy, Sandra; Abd El-Salam El-Sayed, Shimaa; Ferdig, Michael T; Fernández Robledo, José A; Fidock, David A; Florent, Isabelle; Fokou, Patrick VT; Galstian, Ani; Gamo, Francisco Javier; Gokool, Suzanne; Gold, Ben; Golub, Todd; Goldgof, Gregory M; Guha, Rajarshi; Guiguemde, W Armand; Gural, Nil; Guy, R Kiplin; Hansen, Michael AE; Hanson, Kirsten K; Hemphill, Andrew; Hooft van Huijsduijnen, Rob; Horii, Takaaki; Horrocks, Paul; Hughes, Tyler B; Huston, Christopher; Igarashi, Ikuo; Ingram-Sieber, Katrin; Itoe, Maurice A; Jadhav, Ajit; Naranuntarat Jensen, Amornrat; Jensen, Laran T; Jiang, Rays HY; Kaiser, Annette; Keiser, Jennifer; Ketas, Thomas; Kicka, Sebastien; Kim, Sunyoung; Kirk, Kiaran; Kumar, Vidya P; Kyle, Dennis E; Lafuente, Maria Jose; Landfear, Scott; Lee, Nathan; Lee, Sukjun; Lehane, Adele M; Li, Fengwu; Little, David; Liu, Liqiong; Llinás, Manuel; Loza, Maria I; Lubar, Aristea; Lucantoni, Leonardo; Lucet, Isabelle; Maes, Louis; Mancama, Dalu; Mansour, Nuha R; March, Sandra; McGowan, Sheena; Medina Vera, Iset; Meister, Stephan; Mercer, Luke; Mestres, Jordi; Mfopa, Alvine N; Misra, Raj N; Moon, Seunghyun; Moore, John P; Morais Rodrigues da Costa, Francielly; Müller, Joachim; Muriana, Arantza; Nakazawa Hewitt, Stephen; Nare, Bakela; Nathan, Carl; Narraidoo, Nathalie; Nawaratna, Sujeevi; Ojo, Kayode K; Ortiz, Diana; Panic, Gordana; Papadatos, George; Parapini, Silvia; Patra, Kailash; Pham, Ngoc; Prats, Sarah; Plouffe, David M; Poulsen, Sally-Ann; Pradhan, Anupam; Quevedo, Celia; Quinn, Ronald J; Rice, Christopher A; Abdo Rizk, Mohamed; Ruecker, Andrea; St Onge, Robert; Salgado Ferreira, Rafaela; Samra, Jasmeet; Robinett, Natalie G; Schlecht, Ulrich; Schmitt, Marjorie; Silva Villela, Filipe; Silvestrini, Francesco; Sinden, Robert; Smith, Dennis A; Soldati, Thierry; Spitzmüller, Andreas; Stamm, Serge Maximilian; Sullivan, David J; Sullivan, William; Suresh, Sundari; Suzuki, Brian M; Suzuki, Yo; Swamidass, S Joshua; Taramelli, Donatella; Tchokouaha, Lauve RY; Theron, Anjo; Thomas, David; Tonissen, Kathryn F; Townson, Simon; Tripathi, Abhai K; Trofimov, Valentin; Udenze, Kenneth O; Ullah, Imran; Vallieres, Cindy; Vigil, Edgar; Vinetz, Joseph M; Voong Vinh, Phat; Vu, Hoan; Watanabe, Nao-Aki; Weatherby, Kate; White, Pamela M; Wilks, Andrew F; Winzeler, Elizabeth A; Wojcik, Edward; Wree, Melanie; Wu, Wesley; Yokoyama, Naoaki; Zollo, Paul HA; Abla, Nada; Blasco, Benjamin; Burrows, Jeremy; Laleu, Benoît; Leroy, Didier; Spangenberg, Thomas; Wells, Timothy; Willis, Paul A; (2016) Open Source Drug Discovery with the Malaria Box Compound Collection for Neglected Diseases and Beyond. PLoS pathogens, 12 (7). e1005763-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1005763

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van Schalkwyk, May CI; van Schalkwyk, Donelly A; (2016) We must go for gold in public health. BMJ (Clinical research ed), 354. i5138-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.i5138 Full text not available from this repository.

Wahid, Sobia; Stresman, Gillian H; Kamal, Syed Sajid; Sepulveda, Nuno; Kleinschmidt, Immo; Bousema, Teun; Drakeley, Chris; (2016) Heterogeneous malaria transmission in long-term Afghan refugee populations: a cross-sectional study in five refugee camps in northern Pakistan. Malaria journal, 15 (1). 245-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1305-7

Wangroongsarb, Piyaporn; Hwang, Jimee; Thwing, Julie; Karuchit, Samart; Kumpetch, Suthon; Rand, Alison; Drakeley, Chris; MacArthur, John R; Kachur, S Patrick; Satimai, Wichai; +2 more... Meek, Sylvia; Sintasath, David M; (2016) Using Respondent Driven Sampling to Identify Malaria Risks and Occupational Networks among Migrant Workers in Ranong, Thailand. PloS one, 11 (12). e0168371-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0168371

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Willcocks, Sam J; Denman, Carmen C; Atkins, Helen S; Wren, Brendan W; (2016) Intracellular replication of the well-armed pathogen Burkholderia pseudomallei. Current opinion in microbiology, 29. pp. 94-103. ISSN 1369-5274 DOI: https://doi.org/10.1016/j.mib.2015.11.007

Williamson, Alice E; Ylioja, Paul M; Robertson, Murray N; Antonova-Koch, Yevgeniya; Avery, Vicky; Baell, Jonathan B; Batchu, Harikrishna; Batra, Sanjay; Burrows, Jeremy N; Bhattacharyya, Soumya; +43 more... Calderon, Felix; Charman, Susan A; Clark, Julie; Crespo, Benigno; Dean, Matin; Debbert, Stefan L; Delves, Michael; Dennis, Adelaide SM; Deroose, Frederik; Duffy, Sandra; Fletcher, Sabine; Giaever, Guri; Hallyburton, Irene; Gamo, Francisco-Javier; Gebbia, Marinella; Guy, R Kiplin; Hungerford, Zoe; Kirk, Kiaran; Lafuente-Monasterio, Maria J; Lee, Anna; Meister, Stephan; Nislow, Corey; Overington, John P; Papadatos, George; Patiny, Luc; Pham, James; Ralph, Stuart A; Ruecker, Andrea; Ryan, Eileen; Southan, Christopher; Srivastava, Kumkum; Swain, Chris; Tarnowski, Matthew J; Thomson, Patrick; Turner, Peter; Wallace, Iain M; Wells, Timothy NC; White, Karen; White, Laura; Willis, Paul; Winzeler, Elizabeth A; Wittlin, Sergio; Todd, Matthew H; (2016) Open Source Drug Discovery: Highly Potent Antimalarial Compounds Derived from the Tres Cantos Arylpyrroles. ACS central science, 2 (10). pp. 687-701. ISSN 2374-7943 DOI: https://doi.org/10.1021/acscentsci.6b00086

Willis, Alexandra R; Moore, Christopher; Mazon-Moya, Maria; Krokowski, Sina; Lambert, Carey; Till, Robert; Mostowy, Serge; Sockett, R Elizabeth; (2016) Injections of Predatory Bacteria Work Alongside Host Immune Cells to Treat Shigella Infection in Zebrafish Larvae. CURRENT BIOLOGY, 26 (24). pp. 3343-3351. ISSN 0960-9822 DOI: https://doi.org/10.1016/j.cub.2016.09.067

Wong, Vanessa K; Baker, Stephen; Connor, Thomas R; Pickard, Derek; Page, Andrew J; Dave, Jayshree; Murphy, Niamh; Holliman, Richard; Sefton, Armine; Millar, Michael; +4 more... Dyson, Zoe A; Dougan, Gordon; Holt, Kathryn E; International Typhoid Consortium; (2016) An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid. Nature communications, 7 (1). 12827-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms12827

Wyres, Kelly L; Holt, Kathryn E; (2016) Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones. TRENDS IN MICROBIOLOGY, 24 (12). pp. 944-956. ISSN 0966-842X DOI: https://doi.org/10.1016/j.tim.2016.09.007

Wyres, Kelly L; Wick, Ryan R; Gorrie, Claire; Jenney, Adam; Follador, Rainer; Thomson, Nicholas R; Holt, Kathryn E; (2016) Identification of Klebsiella capsule synthesis loci from whole genome data. Microbial genomics, 2 (12). e000102-. ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000102

Wyres, Kelly L; Wick, Ryan R; Gorrie, Claire; Jenney, Adam; Follador, Rainer; Thomson, Nicholas R; Holt, Kathryn E; (2016) Identification of<i>Klebsiella</i>capsule synthesis loci from whole genome data. BioRxiv. DOI: https://doi.org/10.1101/071415

Xu, Gaolian; Nolder, Debbie; Reboud, Julien; Oguike, Mary C; van Schalkwyk, Donelly A; Sutherland, Colin J; Cooper, Jonathan M; (2016) Paper-Origami-Based Multiplexed Malaria Diagnostics from Whole Blood. Angewandte Chemie (International ed in English), 55 (49). pp. 15250-15253. ISSN 1433-7851 DOI: https://doi.org/10.1002/anie.201606060

Xu, Gaolian; Nolder, Debbie; Reboud, Julien; Oguike, Mary C; van Schalkwyk, Donelly A; Sutherland, Colin J; Cooper, Jonathan M; (2016) Paper‐Origami‐Based Multiplexed Malaria Diagnostics from Whole Blood. Angewandte Chemie, 128 (49). pp. 15476-15479. ISSN 0044-8249 DOI: https://doi.org/10.1002/ange.201606060

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Younas, Mahwish; Siddiqui, Fariha; Noreen, Zobia; Bokhari, Syeda Sadia; Gomez-Duarte, Oscar G; Wren, Brendan W; Bokhari, Habib; (2016) Characterization of enteropathogenic Escherichia coli of clinical origin from the pediatric population in Pakistan. Transactions of the Royal Society of Tropical Medicine and Hygiene, 110 (7). pp. 414-420. ISSN 0035-9203 DOI: https://doi.org/10.1093/trstmh/trw047 Full text not available from this repository.

Zak, Daniel E; Penn-Nicholson, Adam; Scriba, Thomas J; Thompson, Ethan; Suliman, Sara; Amon, Lynn M; Mahomed, Hassan; Erasmus, Mzwandile; Whatney, Wendy; Hussey, Gregory D; +24 more... Abrahams, Deborah; Kafaar, Fazlin; Hawkridge, Tony; Verver, Suzanne; Hughes, E Jane; Ota, Martin; Sutherland, Jayne; Howe, Rawleigh; Dockrell, Hazel M; Boom, W Henry; Thiel, Bonnie; Ottenhoff, Tom HM; Mayanja-Kizza, Harriet; Crampin, Amelia C; Downing, Katrina; Hatherill, Mark; Valvo, Joe; Shankar, Smitha; Parida, Shreemanta K; Kaufmann, Stefan HE; Walzl, Gerhard; Aderem, Alan; Hanekom, Willem A; ACS and GC6-74 cohort study groups; (2016) A blood RNA signature for tuberculosis disease risk: a prospective cohort study. Lancet, 387 (10035). pp. 2312-2322. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(15)01316-1

Zakeri, Sedigheh; van den Hoogen, Lotus Leonie; Mehrizi, Akram Abouie; Karimi, Fatemh; Raeisi, Ahmad; Drakeley, Chris; (2016) Anti-malarial seroprevalence assessment during an elimination programme in Chabahar District, south-eastern Iran. Malaria journal, 15 (1). 382-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1432-1

Zelmer, Andrea; Tanner, Rachel; Stylianou, Elena; Damelang, Timon; Morris, Sheldon; Izzo, Angelo; Williams, Ann; Sharpe, Sally; Pepponi, Ilaria; Walker, Barry; +4 more... Hokey, David A; McShane, Helen; Brennan, Michael; Fletcher, Helen; (2016) A new tool for tuberculosis vaccine screening: Ex vivo Mycobacterial Growth Inhibition Assay indicates BCG-mediated protection in a murine model of tuberculosis. BMC infectious diseases, 16 (1). 412-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-016-1751-4