Amambua-Ngwa, Alfred; Jeffries, David; Amato, Roberto; Worwui, Archibald; Karim, Mane; Ceesay, Sukai; Nyang, Haddy; Nwakanma, Davis; Okebe, Joseph; Kwiatkowski, Dominic; +2 more... Conway, David J; D'Alessandro, Umberto; (2018) Consistent signatures of selection from genomic analysis of pairs of temporal and spatial Plasmodium falciparum populations from The Gambia. Scientific reports, 8 (1). 9687-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-28017-5

Armitage, Edwin P; Camara, Janko; Bah, Sulayman; Forster, Alice S; Clarke, Ed; Kampmann, Beate; de Silva, Thushan I; (2018) Acceptability of intranasal live attenuated influenza vaccine, influenza knowledge and vaccine intent in The Gambia. VACCINE, 36 (13). pp. 1772-1780. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.02.037

Azarian, Taj; Mitchell, Patrick K; Georgieva, Maria; Thompson, Claudette M; Ghouila, Amel; Pollard, Andrew J; von Gottberg, Anne; du Plessis, Mignon; Antonio, Martin; Kwambana-Adams, Brenda A; +17 more... Clarke, Stuart C; Everett, Dean; Cornick, Jennifer; Sadowy, Ewa; Hryniewicz, Waleria; Skoczynska, Anna; Moïsi, Jennifer C; McGee, Lesley; Beall, Bernard; Metcalf, Benjamin J; Breiman, Robert F; Ho, PL; Reid, Raymond; O'Brien, Katherine L; Gladstone, Rebecca A; Bentley, Stephen D; Hanage, William P; (2018) Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci. PLoS pathogens, 14 (11). e1007438-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1007438

Chegou, Novel N; Sutherland, Jayne S; Namuganga, Anna-Ritah; Corstjens, Paul Lam; Geluk, Annemieke; Gebremichael, Gebremedhin; Mendy, Joseph; Malherbe, Stephanus; Stanley, Kim; van der Spuy, Gian D; +25 more... Kriel, Magdalena; Loxton, Andre G; Kriel, Belinda; Simukonda, Felanji; Bekele, Yonas; Sheehama, Jacob A; Nelongo, Josefina; van der Vyver, Marieta; Gebrexabher, Atsbeha; Hailu, Habteyes; Esterhuyse, Maria M; Rosenkrands, Ida; Aagard, Claus; Kidd, Martin; Kassa, Desta; Mihret, Adane; Howe, Rawleigh; Cliff, Jacqueline M; Crampin, Amelia C; Mayanja-Kizza, Harriet; Kaufmann, Stefan HE; Dockrell, Hazel M; Ottenhoff, Tom HM; Walzl, Gerhard; AE-TBC consortium; (2018) Africa-wide evaluation of host biomarkers in QuantiFERON supernatants for the diagnosis of pulmonary tuberculosis. Scientific reports, 8 (1). 2675-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-20855-7

Duffy, Craig W; Amambua-Ngwa, Alfred; Ahouidi, Ambroise D; Diakite, Mahamadou; Awandare, Gordon A; Ba, Hampate; Tarr, Sarah J; Murray, Lee; Stewart, Lindsay B; D'Alessandro, Umberto; +3 more... Otto, Thomas D; Kwiatkowski, Dominic P; Conway, David J; (2018) Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development. Scientific reports, 8 (1). 15763-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-34078-3

Forson, Audrey; Kwara, Awewura; Kudzawu, Samuel; Omari, Michael; Otu, Jacob; Gehre, Florian; de Jong, Bouke; Antonio, Martin; (2018) A cross-sectional study of tuberculosis drug resistance among previously treated patients in a tertiary hospital in Accra, Ghana: public health implications of standardized regimens. BMC infectious diseases, 18 (1). 149-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-018-3053-5

Garand, Mathieu; Goodier, Martin; Owolabi, Olumuyiwa; Donkor, Simon; Kampmann, Beate; Sutherland, Jayne S; (2018) Functional and Phenotypic Changes of Natural Killer Cells in Whole Blood during Mycobacterium tuberculosis Infection and Disease. Frontiers in immunology, 9 (FEB). 257-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.00257

Grais, Rebecca F; Laminou, Ibrahim M; Woi-Messe, Lynda; Makarimi, Rockyath; Bouriema, Seidou H; Langendorf, Celine; Amambua-Ngwa, Alfred; D'Alessandro, Umberto; Guérin, Philippe J; Fandeur, Thierry; +1 more... Sibley, Carol H; (2018) Molecular markers of resistance to amodiaquine plus sulfadoxine-pyrimethamine in an area with seasonal malaria chemoprevention in south central Niger. Malaria journal, 17 (1). 98-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-018-2242-4

Hasan, Alvira Z; Saha, Senjuti; Saha, Samir K; Sahakyan, Gayane; Grigoryan, Svetlana; Mwenda, Jason M; Antonio, Martin; Knoll, Maria D; Serhan, Fatima; Cohen, Adam L; +1 more... Pneumococcal and rotavirus surveillance case study group; (2018) Using pneumococcal and rotavirus surveillance in vaccine decision-making: A series of case studies in Bangladesh, Armenia and the Gambia. Vaccine, 36 (32 Pt ). pp. 4939-4943. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.06.001

Kariuki, Samuel; Keddy, Karen H; Antonio, Martin; Okeke, Iruka N; (2018) Antimicrobial resistance surveillance in Africa: Successes, gaps and a roadmap for the future. AFRICAN JOURNAL OF LABORATORY MEDICINE, 7 (2). 924-. ISSN 2225-2002 DOI: https://doi.org/10.4102/ajlm.v7i2.924

Kwambana-Adams, Brenda A; Amaza, Rahab C; Okoi, Catherine; Rabiu, Murtala; Worwui, Archibald; Foster-Nyarko, Ebenezer; Ebruke, Bernard; Sesay, Abdul K; Senghore, Madikay; Umar, Abdullahi S; +31 more... Usman, Rabi; Atiku, Adamu; Abdullahi, Garba; Buhari, Yahaya; Sani, Rabiu; Bako, Husaini U; Abdullahi, Bashir; Yarima, Alliyu I; Sikiru, Badaru; Moses, Aderinola Olaolu; Popoola, Michael O; Ekeng, Eme; Olayinka, Adebola; Mba, Nwando; Kankia, Adamu; Mamadu, Ibrahim N; Okudo, Ifeanyi; Stephen, Mary; Ronveaux, Olivier; Busuttil, Jason; Mwenda, Jason M; Abdulaziz, Mohammed; Gummi, Sulaiman A; Adedeji, Adebayo; Bita, Andre; Omar, Linda; Djingarey, Mamoudou Harouna; Alemu, Wondimagegnehu; D'Alessandro, Umberto; Ihekweazu, Chikwe; Antonio, Martin; (2018) Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria. Scientific reports, 8 (1). 14194-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-32475-2

Lo, Stephanie W; Gladstone, Rebecca A; van Tonder, Andries J; Hawkins, Paulina A; Kwambana-Adams, Brenda; Cornick, Jennifer E; Madhi, Shabir A; Nzenze, Susan A; du Plessis, Mignon; Kandasamy, Rama; +13 more... Carter, Philip E; Eser, Özgen Köseoglu; Ho, Pak Leung; Elmdaghri, Naima; Shakoor, Sadia; Clarke, Stuart C; Antonio, Martin; Everett, Dean B; von Gottberg, Anne; Klugman, Keith P; McGee, Lesley; Breiman, Robert F; Bentley, Stephen D; (2018) Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine. Journal of clinical microbiology, 56 (7). e00228-e00218. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00228-18

Lubbers, Rosalie; Sutherland, Jayne S; Goletti, Delia; de Paus, Roelof A; van Moorsel, Coline HM; Veltkamp, Marcel; Vestjens, Stefan MT; Bos, Willem JW; Petrone, Linda; Del Nonno, Franca; +10 more... Bajema, Ingeborg M; Dijkman, Karin; Verreck, Frank AW; Walzl, Gerhard; Gelderman, Kyra A; Groeneveld, Geert H; Geluk, Annemieke; Ottenhoff, Tom HM; Joosten, Simone A; Trouw, Leendert A; (2018) Complement Component C1q as Serum Biomarker to Detect Active Tuberculosis. FRONTIERS IN IMMUNOLOGY, 9 (OCT). 2427-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.02427

Morter, Richard; Adetifa, Ifedayo; Antonio, Martin; Touray, Fatima; de Jong, Bouke C; Gower, Charlotte M; Gehre, Florian; (2018) Examining human paragonimiasis as a differential diagnosis to tuberculosis in The Gambia. BMC research notes, 11 (1). 31-. ISSN 1756-0500 DOI: https://doi.org/10.1186/s13104-018-3134-y

Munoz, Flor M; Van Damme, Pierre; Dinleyici, Ener; Clarke, Ed; Kampmann, Beate; Heath, Paul T; Levy, Ofer; Leuridan, Elke; Cutland, Clare; Sobanjo-Ter Meulen, Ajoke; +1 more... Marchant, Arnaud; (2018) The Fourth International Neonatal and Maternal Immunization Symposium (INMIS 2017): Toward Integrating Maternal and Infant Immunization Programs. mSphere, 3 (6). ISSN 2379-5042 DOI: https://doi.org/10.1128/mSphere.00221-18

Osei-Wusu, Stephen; Amo Omari, Michael; Asante-Poku, Adwoa; Darko Otchere, Isaac; Asare, Prince; Forson, Audrey; Otu, Jacob; Antonio, Martin; Yeboah-Manu, Dorothy; (2018) Second-line anti-tuberculosis drug resistance testing in Ghana identifies the first extensively drug-resistant tuberculosis case. Infection and Drug Resistance, Volume. pp. 239-246. DOI: https://doi.org/10.2147/idr.s152720

Otchere, Isaac Darko; Coscollá, Mireia; Sánchez-Busó, Leonor; Asante-Poku, Adwoa; Brites, Daniela; Loiseau, Chloe; Meehan, Conor; Osei-Wusu, Stephen; Forson, Audrey; Laryea, Clement; +18 more... Yahayah, Abdallah Iddrisu; Baddoo, Akosua; Ansa, Gloria Akosua; Aboagye, Samuel Yaw; Asare, Prince; Borrell, Sonia; Gehre, Florian; Beckert, Patrick; Kohl, Thomas A; N'dira, Sanoussi; Beisel, Christian; Antonio, Martin; Niemann, Stefan; de Jong, Bouke C; Parkhill, Julian; Harris, Simon R; Gagneux, Sebastien; Yeboah-Manu, Dorothy; (2018) Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches. Scientific Reports, 8 (1). 11269-. DOI: https://doi.org/10.1038/s41598-018-29620-2

Otto, Thomas D; Böhme, Ulrike; Sanders, Mandy; Reid, Adam; Bruske, Ellen I; Duffy, Craig W; Bull, Pete C; Pearson, Richard D; Abdi, Abdirahman; Dimonte, Sandra; +14 more... Stewart, Lindsay B; Campino, Susana; Kekre, Mihir; Hamilton, William L; Claessens, Antoine; Volkman, Sarah K; Ndiaye, Daouda; Amambua-Ngwa, Alfred; Diakite, Mahamadou; Fairhurst, Rick M; Conway, David J; Franck, Matthias; Newbold, Chris I; Berriman, Matt; (2018) Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres. Wellcome open research, 3. 52-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14571.1

Oyebola, Kolapo Muyiwa; Aina, Oluwagbemiga Olanrewaju; Idowu, Emmanuel Taiwo; Olukosi, Yetunde Adeola; Ajibaye, Olusola Sunday; Otubanjo, Olubunmi Adetoro; Awolola, Taiwo Samson; Awandare, Gordon Akanzuwine; Amambua-Ngwa, Alfred; (2018) A barcode of multilocus nuclear DNA identifies genetic relatedness in pre- and post-Artemether/Lumefantrine treated Plasmodium falciparum in Nigeria. BMC INFECTIOUS DISEASES, 18 (1). 392-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-018-3314-3

Phelan, Jody; de Sessions, Paola Florez; Tientcheu, Leopold; Perdigao, Joao; Machado, Diana; Hasan, Rumina; Hasan, Zahra; Bergval, Indra L; Anthony, Richard; McNerney, Ruth; +6 more... Antonio, Martin; Portugal, Isabel; Viveiros, Miguel; Campino, Susana; Hibberd, Martin L; Clark, Taane G; (2018) Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. Scientific reports, 8 (1). 160-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18188-y

Senghore, M; Diarra, B; Gehre, F; Otu, J; Worwui, A; Muhammad, AK; Sanogo, M; Baya, B; Orsega, S; Doumbia, S; +4 more... Diallo, S; de Jong, BC; Pallen, MJ; Antonio, M; (2018) Evolution of virulent genotypes and an emerging threat of multidrug resistant tuberculosis in Bamako, Mali. International Journal of Infectious Diseases, 73. pp. 65-66. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2018.04.3573

Svardal, Hannes; Jasinska, Anna J; Apetrei, Cristian; Coppola, Giovanni; Huang, Yu; Schmitt, Christopher A; Jacquelin, Beatrice; Ramensky, Vasily; Müller-Trutwin, Michaela; Antonio, Martin; +8 more... Weinstock, George; Grobler, J Paul; Dewar, Ken; Wilson, Richard K; Turner, Trudy R; Warren, Wesley C; Freimer, Nelson B; Nordborg, Magnus; (2018) Publisher Correction: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations. Nature genetics, 50 (11). 1617-. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0124-x

Togun, Toyin Omotayo; MacLean, Emily; Kampmann, Beate; Pai, Madhukar; (2018) Biomarkers for diagnosis of childhood tuberculosis: A systematic review. PloS one, 13 (9). e0204029-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0204029

Wariri, Oghenebrume; Jalo, Iliya; Bode-Thomas, Fidelia; (2018) Discriminative ability of adiposity measures for elevated blood pressure among adolescents in a resource-constrained setting in northeast Nigeria: a cross-sectional analysis. BMC obesity, 5 (1). 35-. ISSN 2052-9538 DOI: https://doi.org/10.1186/s40608-018-0211-7

Weiner, January; Maertzdorf, Jeroen; Sutherland, Jayne S; Duffy, Fergal J; Thompson, Ethan; Suliman, Sara; McEwen, Gayle; Thiel, Bonnie; Parida, Shreemanta K; Zyla, Joanna; +12 more... Hanekom, Willem A; Mohney, Robert P; Boom, W Henry; Mayanja-Kizza, Harriet; Howe, Rawleigh; Dockrell, Hazel M; Ottenhoff, Tom HM; Scriba, Thomas J; Zak, Daniel E; Walzl, Gerhard; Kaufmann, Stefan HE; GC6-74 consortium; (2018) Metabolite changes in blood predict the onset of tuberculosis. Nature Communications, 9 (1). 5208-. DOI: https://doi.org/10.1038/s41467-018-07635-7