Carey, Megan E; Dyson, Zoe A; Argimón, Silvia; Cerdeira, Louise; Yeats, Corin; Aanensen, David; Mboowa, Gerald; Baker, Stephen; Tessema, Sofonias K; Smith, Anthony M; +2 more... Okeke, Iruka N; Holt, Kathryn E; (2023) Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization. Open forum infectious diseases, 10 (Suppl ). S38-S46. ISSN 2328-8957 DOI: https://doi.org/10.1093/ofid/ofad044

Cerdeira, Louise T; Lam, Margaret MC; Wyres, Kelly L; Wick, Ryan R; Judd, Louise M; Lopes, Ralf; Ribas, Rosineide M; Morais, Marcia M; Holt, Kathryn E; Lincopan, Nilton; (2019) Small IncQ1 and Col-Like Plasmids Harboring blaKPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258. Antimicrobial agents and chemotherapy, 63 (3). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.02140-18

Hawkey, Jane; Cottingham, Hugh; Tokolyi, Alex; Wick, Ryan R; Judd, Louise M; Cerdeira, Louise; de Oliveira Garcia, Doroti; Wyres, Kelly L; Holt, Kathryn E; (2022) Linear plasmids in Klebsiella and other Enterobacteriaceae. Microbial genomics, 8 (4). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000807

Hawkey, Jane; Paranagama, Kalani; Baker, Kate S; Bengtsson, Rebecca J; Weill, François-Xavier; Thomson, Nicholas R; Baker, Stephen; Cerdeira, Louise; Iqbal, Zamin; Hunt, Martin; +5 more... Ingle, Danielle J; Dallman, Timothy J; Jenkins, Claire; Williamson, Deborah A; Holt, Kathryn E; (2021) Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei. Nature communications, 12 (1). 2684-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-22700-4

Lam, Margaret MC; Wick, Ryan R; Watts, Stephen C; Cerdeira, Louise T; Wyres, Kelly L; Holt, Kathryn E; (2021) A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. Nature communications, 12 (1). 4188-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-24448-3

Quek, Shannon; Cerdeira, Louise; Jeffries, Claire L; Tomlinson, Sean; Walker, Thomas; Hughes, Grant L; Heinz, Eva; (2022) Wolbachia endosymbionts in two Anopheles species indicates independent acquisitions and lack of prophage elements. Microbial genomics, 8 (4). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000805

Wick, Ryan R; Judd, Louise M; Cerdeira, Louise T; Hawkey, Jane; Méric, Guillaume; Vezina, Ben; Wyres, Kelly L; Holt, Kathryn E; (2021) Trycycler: consensus long-read assemblies for bacterial genomes. Genome biology, 22 (1). 266-. ISSN 1474-7596 DOI: https://doi.org/10.1186/s13059-021-02483-z