Campos, Monica; Phelan, Jody; Spadar, Anton; Collins, Emma; Gonçalves, Adéritow; Pelloquin, Bethanie; Vaselli, Natasha Marcella; Meiwald, Anne; Clark, Emma; Stica, Caleb; +12 more... Orsborne, James; Sylla, Moussa; Edi, Constant; Camara, Denka; Mohammed, Abdul Rahim; Afrane, Yaw Asare; Kristan, Mojca; Walker, Thomas; Gomez, Lara Ferrero; Messenger, Louisa A; Clark, Taane G; Campino, Susana; (2022) High-throughput barcoding method for the genetic surveillance of insecticide resistance and species identification in Anopheles gambiae complex malaria vectors. Scientific Reports, 12 (1). 13893-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-022-17822-8

Collins, Emma L; Phelan, Jody E; Hubner, Magdalena; Spadar, Anton; Campos, Monica; Ward, Daniel; Acford-Palmer, Holly; Gomes, Ana Rita; Silva, Keily; Ferrero Gomez, Lara; +2 more... Clark, Taane G; Campino, Susana; (2022) A next generation targeted amplicon sequencing method to screen for insecticide resistance mutations in Aedes aegypti populations reveals a rdl mutation in mosquitoes from Cabo Verde. PLoS neglected tropical diseases, 16 (12). e0010935-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0010935

Mills, Richael O; Dadzie, Isaac; Le-Viet, Thanh; Baker, David J; Addy, Humphrey PK; Akwetey, Samuel A; Donkoh, Irene E; Quansah, Elvis; Semanshia, Prince S; Morgan, Jennifer; +9 more... Mensah, Abraham; Adade, Nana E; Ampah, Emmanuel O; Owusu, Emmanuel; Mwintige, Philimon; Amoako, Eric O; Spadar, Anton; Holt, Kathryn E; Foster-Nyarko, Ebenezer; (2024) Genomic diversity and antimicrobial resistance in clinical Klebsiella pneumoniae isolates from tertiary hospitals in Southern Ghana. The Journal of antimicrobial chemotherapy, 79 (7). pp. 1529-1539. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkae123

Perdigão, João; Caneiras, Cátia; Elias, Rita; Modesto, Ana; Spadar, Anton; Phelan, Jody; Campino, Susana; Clark, Taane G; Costa, Eliana; Saavedra, Maria José; +1 more... Duarte, Aida; (2020) Genomic Epidemiology of Carbapenemase Producing Klebsiella pneumoniae Strains at a Northern Portuguese Hospital Enables the Detection of a Misidentified Klebsiella variicola KPC-3 Producing Strain. MICROORGANISMS, 8 (12). p. 1986. ISSN 2076-2607 DOI: https://doi.org/10.3390/microorganisms8121986

Perdigão, João; Modesto, Ana; Pereira, AL; Neto, O; Matos, V; Godinho, A; Phelan, Jody; Charleston, James; Spadar, Anton; de Sessions, Paola Florez; +9 more... Hibberd, Martin; Campino, Susana; Costa, A; Fernandes, F; Ferreira, F; Correia, AB; Gonçalves, Luisa; Clark, Taane G; Duarte, Aida; (2020) Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospital. Microbial genomics, 7 (6). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000349

Spadar, Anton; Collins, Emma; Messenger, Louisa A; Clark, Taane G; Campino, Susana; (2024) Uncovering the genetic diversity in Aedes aegypti insecticide resistance genes through global comparative genomics. Scientific Reports, 14 (1). 13447-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-024-64007-6

Spadar, Anton; Perdigão, João; Campino, Susana; Clark, Taane G; (2022) Genomic analysis of hypervirulent Klebsiella pneumoniae reveals potential genetic markers for differentiation from classical strains. Scientific Reports, 12 (1). 13671-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-022-17995-2

Spadar, Anton; Perdigão, João; Campino, Susana; Clark, Taane G; (2023) Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains. Genome medicine, 15 (1). 3-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-023-01153-y

Spadar, Anton; Perdigão, João; Phelan, Jody; Charleston, James; Modesto, Ana; Elias, Rita; de Sessions, Paola Florez; Hibberd, Martin L; Campino, Susana; Duarte, Aida; +1 more... Clark, Taane G; (2021) Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals. Scientific reports, 11 (1). 6491-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-85724-2

Spadar, Anton; Phelan, Jody E; Benavente, Ernest Diez; Campos, Monica; Gomez, Lara Ferrero; Mohareb, Fady; Clark, Taane G; Campino, Susana; (2021) Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus. Parasites & vectors, 14 (1). 332-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-021-04828-w

Spadar, Anton; Phelan, Jody E; Clark, Taane G; Campino, Susana; (2023) Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. Parasites & vectors, 16 (1). 265-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-023-05898-8

Spadar, Anton; Phelan, Jody; Elias, Rita; Modesto, Ana; Caneiras, Cátia; Marques, Cátia; Lito, Luís; Pinto, Margarida; Cavaco-Silva, Patrícia; Ferreira, Helena; +8 more... Pomba, Constança; Da Silva, Gabriela J; Saavedra, Maria José; Melo-Cristino, José; Duarte, Aida; Campino, Susana; Perdigão, João; Clark, Taane G; (2022) Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance. Scientific Reports, 12 (1). 13791-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-022-17996-1

Tsang, Kara K; Lam, Margaret MC; Wick, Ryan R; Wyres, Kelly L; Bachman, Michael; Baker, Stephen; Barry, Katherine; Brisse, Sylvain; Campino, Susana; Chiaverini, Alexandra; +65 more... Cirillo, Daniela Maria; Clark, Taane; Corander, Jukka; Corbella, Marta; Cornacchia, Alessandra; Cuénod, Aline; D'Alterio, Nicola; Di Marco, Federico; Donado-Godoy, Pilar; Egli, Adrian; Farzana, Refath; Feil, Edward J; Fostervold, Aasmund; Gorrie, Claire L; Hassan, Brekhna; Hetland, Marit Andrea Klokkhammer; Hoa, Le Nguyen Minh; Hoi, Le Thi; Howden, Benjamin; Ikhimiukor, Odion O; Jenney, Adam WJ; Kaspersen, Håkon; Khokhar, Fahad; Leangapichart, Thongpan; Ligowska-Marzęta, Małgorzata; Löhr, Iren Høyland; Long, Scott W; Mathers, Amy J; McArthur, Andrew G; Nagaraj, Geetha; Oaikhena, Anderson O; Okeke, Iruka N; Perdigão, João; Parikh, Hardik; Pham, My H; Pomilio, Francesco; Raffelsberger, Niclas; Rakotondrasoa, Andriniaina; Kumar, KL Ravi; Roberts, Leah W; Rodrigues, Carla; Samuelsen, Ørjan; Sands, Kirsty; Sassera, Davide; Seth-Smith, Helena; Shamanna, Varun; Sherry, Norelle L; Sia, Sonia; Spadar, Anton; Stoesser, Nicole; Sunde, Marianne; Sundsfjord, Arnfinn; Thach, Pham Ngoc; Thomson, Nicholas R; Thorpe, Harry A; Torok, M Estée; Trang, Van Dinh; Trung, Nguyen Vu; Vornhagen, Jay; Walsh, Timothy; Warne, Ben; Wilson, Hayley; Wright, Gerard D; Holt, Kathryn E; KlebNET-Gsp Amr Genotype-Phenotype Group; (2024) Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae. Microbial genomics, 10 (10). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.001294

Turkiewicz, Anna; Manko, Emilia; Oresegun, Damiola R; Nolder, Debbie; Spadar, Anton; Sutherland, Colin J; Cox-Singh, Janet; Moon, Robert W; Lau, Yee-Ling; Campino, Susana; +1 more... Clark, Taane G; (2023) Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations. Scientific reports, 13 (1). 2142-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-023-29368-4