Abaasa, Andrew; Asiki, Gershim; Mpendo, Juliet; Levin, Jonathan; Seeley, Janet; Nielsen, Leslie; Ssetaala, Ali; Nanvubya, Annet; De Bont, Jan; Kaleebu, Pontiano; +1 more... Kamali, Anatoli; (2015) Factors associated with dropout in a long term observational cohort of fishing communities around lake Victoria, Uganda. BMC research notes, 8 (1). 815-. ISSN 1756-0500 DOI: https://doi.org/10.1186/s13104-015-1804-6

Abaasa, Andrew; Asiki, Gershim; Obuku Ekii, Andrew; Wanyenze, Josephine; Pala, Pietro; J van Dam, Govert; Corstjens, Paul LAM; Hughes, Peter; Ding, Song; Pantaleo, Giuseppe; +3 more... Kaleebu, Pontiano; Elliott, Alison M; Kamali, Anatoli; (2018) Effect of high-intensity versus low-intensity praziquantel treatment on HIV disease progression in HIV and Schistosoma mansoni co-infected patients: a randomised controlled trial. Wellcome open research, 3. 81-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14683.2

Abaasa, Andrew; Asiki, Gershim; Obuku Ekii, Andrew; Wanyenze, Josephine; Pala, Pietro; J van Dam, Govert; Corstjens, Paul LAM; Hughes, Peter; Ding, Song; Pantaleo, Giuseppe; +3 more... Kaleebu, Pontiano; Elliott, Alison M; Kamali, Anatoli; (2019) Effect of high-intensity versus low-intensity praziquantel treatment on HIV disease progression in HIV and Schistosoma mansoni co-infected patients: a randomised controlled trial. Wellcome Open Research, 3. 81-. DOI: https://doi.org/10.12688/wellcomeopenres.14683.2

Abaasa, Andrew; Asiki, Gershim; Obuku Ekii, Andrew; Wanyenze, Josephine; Pala, Pietro; J. van Dam, Govert; L.A.M. Corstjens, Paul; Hughes, Peter; Ding, Song; Pantaleo, Giuseppe; +3 more... Kaleebu, Pontiano; M. Elliott, Alison; Kamali, Anatoli; (2018) Effect of high-intensity versus low-intensity praziquantel treatment on HIV disease progression in HIV and Schistosoma mansoni co-infected patients: a randomised controlled trial. Wellcome Open Research, 3. p. 81. DOI: https://doi.org/10.12688/wellcomeopenres.14683.1

Abaasa, Andrew; Mayanja, Yunia; Asiki, Gershim; Price, Matt A; Fast, Patricia E; Ruzagira, Eugene; Kaleebu, Pontiano; Todd, Jim; LSHTM, MRC/UVRI and LSHTM Uganda Research Unit, IAVI; (2021) Use of propensity score matching to create counterfactual group to assess potential HIV prevention interventions. Scientific reports, 11 (1). 7017-. DOI: https://doi.org/10.1038/s41598-021-86539-x

Abaasa, Andrew; Nash, Stephen; Mayanja, Yunia; Price, Matt A; Fast, Patricia E; Kaleebu, Pontiano; Todd, Jim; (2020) Comparison of HIV Risk Behaviors Between Clinical Trials and Observational Cohorts in Uganda. AIDS and behavior, 24 (10). pp. 2872-2884. ISSN 1090-7165 DOI: https://doi.org/10.1007/s10461-020-02838-w

Abaasa, Andrew; Nash, Stephen; Mayanja, Yunia; Price, Matt; Fast, Patricia E; Kamali, Anatoli; Kaleebu, Pontiano; Todd, Jim; (2019) Simulated vaccine efficacy trials to estimate HIV incidence for actual vaccine clinical trials in key populations in Uganda. Vaccine, 37 (15). pp. 2065-2072. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2019.02.072

Abaasa, Andrew; Todd, Jim; Mayanja, Yunia; Price, Matt; Fast, Patricia E; Kaleebu, Pontiano; Nash, Stephen; (2019) Use of reliable contraceptives and its correlates among women participating in Simulated HIV vaccine efficacy trials in key-populations in Uganda. Scientific Reports, 9 (1). 15418-. DOI: https://doi.org/10.1038/s41598-019-51879-2

Abaasa, Andrew; Todd, Jim; Nash, Stephen; Mayanja, Yunia; Kaleebu, Pontiano; Fast, Patricia E; Price, Matt; (2020) Comparison of retention in observational cohorts and nested simulated HIV vaccine efficacy trials in the key populations in Uganda. BMC medical research methodology, 20 (1). 32-. ISSN 1471-2288 DOI: https://doi.org/10.1186/s12874-020-00920-4

Aceng, Jane Ruth; Ario, Alex R; Muruta, Allan N; Makumbi, Issa; Nanyunja, Miriam; Komakech, Innocent; Bakainaga, Andrew N; Talisuna, Ambrose O; Mwesigye, Collins; Mpairwe, Allan M; +117 more... Tusiime, Jayne B; Lali, William Z; Katushabe, Edson; Ocom, Felix; Kaggwa, Mugagga; Bongomin, Bodo; Kasule, Hafisa; Mwoga, Joseph N; Sensasi, Benjamin; Mwebembezi, Edmund; Katureebe, Charles; Sentumbwe, Olive; Nalwadda, Rita; Mbaka, Paul; Fatunmbi, Bayo S; Nakiire, Lydia; Lamorde, Mohammed; Walwema, Richard; Kambugu, Andrew; Nanyondo, Judith; Okware, Solome; Ahabwe, Peter B; Nabukenya, Immaculate; Kayiwa, Joshua; Wetaka, Milton M; Kyazze, Simon; Kwesiga, Benon; Kadobera, Daniel; Bulage, Lilian; Nanziri, Carol; Monje, Fred; Aliddeki, Dativa M; Ntono, Vivian; Gonahasa, Doreen; Nabatanzi, Sandra; Nsereko, Godfrey; Nakinsige, Anne; Mabumba, Eldard; Lubwama, Bernard; Sekamatte, Musa; Kibuule, Michael; Muwanguzi, David; Amone, Jackson; Upenytho, George D; Driwale, Alfred; Seru, Morries; Sebisubi, Fred; Akello, Harriet; Kabanda, Richard; Mutengeki, David K; Bakyaita, Tabley; Serwanjja, Vivian N; Okwi, Richard; Okiria, Jude; Ainebyoona, Emmanuel; Opar, Bernard T; Mimbe, Derrick; Kyabaggu, Denis; Ayebazibwe, Chrisostom; Sentumbwe, Juliet; Mwanja, Moses; Ndumu, Deo B; Bwogi, Josephine; Balinandi, Stephen; Nyakarahuka, Luke; Tumusiime, Alex; Kyondo, Jackson; Mulei, Sophia; Lutwama, Julius; Kaleebu, Pontiano; Kagirita, Atek; Nabadda, Susan; Oumo, Peter; Lukwago, Robinah; Kasozi, Julius; Masylukov, Oleh; Kyobe, Henry Bosa; Berdaga, Viorica; Lwanga, Miriam; Opio, Joe C; Matseketse, David; Eyul, James; Oteba, Martin O; Bukirwa, Hasifa; Bulya, Nulu; Masiira, Ben; Kihembo, Christine; Ohuabunwo, Chima; Antara, Simon N; Owembabazi, Wilberforce; Okot, Paul B; Okwera, Josephine; Amoros, Isabelle; Kajja, Victoria; Mukunda, Basnet S; Sorela, Isabel; Adams, Gregory; Shoemaker, Trevor; Klena, John D; Taboy, Celine H; Ward, Sarah E; Merrill, Rebecca D; Carter, Rosalind J; Harris, Julie R; Banage, Flora; Nsibambi, Thomas; Ojwang, Joseph; Kasule, Juliet N; Stowell, Dan F; Brown, Vance R; Zhu, Bao-Ping; Homsy, Jaco; Nelson, Lisa J; Tusiime, Patrick K; Olaro, Charles; Mwebesa, Henry G; Woldemariam, Yonas Tegegn; (2020) Uganda's experience in Ebola virus disease outbreak preparedness, 2018-2019. Globalization and health, 16 (1). 24-. ISSN 1744-8603 DOI: https://doi.org/10.1186/s12992-020-00548-5

Adebamowo, Clement; Bah-Sow, Oumou; Binka, Fred; Bruzzone, Roberto; Caplan, Arthur; Delfraissy, Jean-François; Heymann, David; Horby, Peter; Kaleebu, Pontiano; Tamfum, Jean-Jacques Muyembe; +7 more... Olliaro, Piero; Piot, Peter; Tejan-Cole, Abdul; Tomori, Oyewale; Toure, Aissatou; Torreele, Els; Whitehead, John; (2014) Randomised controlled trials for Ebola: practical and ethical issues. Lancet, 384 (9952). pp. 1423-1424. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(14)61734-7

Anywaine, Zacchaeus; Whitworth, Hilary; Kaleebu, Pontiano; Praygod, George; Shukarev, Georgi; Manno, Daniela; Kapiga, Saidi; Grosskurth, Heiner; Kalluvya, Samuel; Bockstal, Viki; +5 more... Anumendem, Dickson; Luhn, Kerstin; Robinson, Cynthia; Douoguih, Macaya; Watson-Jones, Deborah; (2019) Safety and Immunogenicity of a 2-Dose Heterologous Vaccination Regimen With Ad26.ZEBOV and MVA-BN-Filo Ebola Vaccines: 12-Month Data From a Phase 1 Randomized Clinical Trial in Uganda and Tanzania. The Journal of infectious diseases, 220 (1). pp. 46-56. ISSN 1537-6613 DOI: https://doi.org/10.1093/infdis/jiz070

Asiki, Gershim; Abaasa, Andrew; Ruzagira, Eugene; Kibengo, Freddie; Bahemuka, Ubaldo; Mulondo, Jerry; Seeley, Janet; Bekker, Linda-Gail; Delany, Sinead; Kaleebu, Pontiano; +1 more... Kamali, Anatoli; (2013) Willingness to participate in HIV vaccine efficacy trials among high risk men and women from fishing communities along Lake Victoria in Uganda. Vaccine, 31 (44). pp. 5055-5061. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2013.08.080 Full text not available from this repository.

Asiki, Gershim; Baisley, Kathy; Kamali, Anatoli; Kaleebu, Pontiano; Seeley, Janet; Newton, Robert; (2015) A prospective study of trends in consumption of cigarettes and alcohol among adults in a rural Ugandan population cohort, 1994-2011. Tropical medicine & international health, 20 (4). pp. 527-536. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12451 Full text not available from this repository.

Asiki, Gershim; Mpendo, Juliet; Abaasa, Andrew; Agaba, Collins; Nanvubya, Annet; Nielsen, Leslie; Seeley, Janet; Kaleebu, Pontiano; Grosskurth, Heiner; Kamali, Anatoli; (2011) HIV and syphilis prevalence and associated risk factors among fishing communities of Lake Victoria, Uganda. Sexually transmitted infections, 87 (6). pp. 511-515. ISSN 1368-4973 DOI: https://doi.org/10.1136/sti.2010.046805 Full text not available from this repository.

Asiki, Gershim; Reniers, Georges; Newton, Robert; Baisley, Kathy; Nakiyingi-Miiro, Jessica; Slaymaker, Emma; Kasamba, Ivan; Seeley, Janet; Todd, Jim; Kaleebu, Pontiano; +1 more... Kamali, Anatoli; (2016) Adult life expectancy trends in the era of antiretroviral treatment in rural Uganda (1991-2012). AIDS (London, England), 30 (3). pp. 487-493. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000000930

Asiki, Gershim; Stockdale, Lisa; Kasamba, Ivan; Vudriko, Tobias; Tumwekwase, Grace; Johnston, Tom; Kaleebu, Pontiano; Kamali, Anatoli; Seeley, Janet; Newton, Robert; (2015) Pilot study of antibodies against varicella zoster virus and human immunodeficiency virus in relation to the risk of developing stroke, nested within a rural cohort in Uganda. Tropical medicine & international health, 20 (10). pp. 1306-1310. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12556 Full text not available from this repository.

Asio, Juliet; Watera, Christine; Namuwenge, Norah; Kirungi, Wilford; Musinguzi, Joshua; Mugagga, Kaggwa; Busobozi, Ronald; Tusiime, Bridget Jolly; Lutalo, Tom; Mbidde, Edward Katongole; +2 more... Kaleebu, Pontiano; Uganda HIV Drug Resistance Technical Working Group; (2020) Population-based monitoring of HIV drug resistance early warning indicators in Uganda: A nationally representative survey following revised WHO recommendations. PloS one, 15 (4). e0230451-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0230451

Atim, Stella A; Ashraf, Shirin; Belij-Rammerstorfer, Sandra; Ademun, Anna R; Vudriko, Patrick; Nakayiki, Teddy; Niebel, Marc; Shepherd, James; Balinandi, Stephen; Nakanjako, Gladys; +11 more... Abaasa, Andrew; Johnson, Paul CD; Odongo, Steven; Esau, Martin; Bahati, Milton; Kaleebu, Pontiano; Lutwama, Julius J; Masembe, Charles; Lambe, Teresa; Thomson, Emma C; Tweyongyere, Robert; (2022) Risk factors for Crimean-Congo Haemorrhagic Fever (CCHF) virus exposure in farming communities in Uganda. The Journal of infection, 85 (6). pp. 693-701. ISSN 0163-4453 DOI: https://doi.org/10.1016/j.jinf.2022.09.007

Averhoff, Francisco; Berg, Michael; Rodgers, Mary; Osmanov, Saladin; Luo, Xinxin; Anderson, Mark; Meyer, Todd; Landay, Alan; Gamkrelidze, Amiran; Kallas, Esper G; +16 more... Ciuoderis, Karl; Hernandez, Juan Pablo; Henry, Jean Hugues; Osorio, Jorge; Lindo, John; Deshommes, Johnson; Anzinger, Joshua; Manasa, Justen; Alkashvili, Maia; Souleyman, Mboup; Kaleebu, Pontiano; Correa-Oliveira, Rodrigo; Solomon, Sunil; de Olivera, Tulio; Suputtamongkol, Yupin; Cloherty, Gavin; (2022) The Abbott Pandemic Defense Coalition: a unique multisector approach adds to global pandemic preparedness efforts. International Journal of Infectious Diseases, 117. pp. 356-360. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2022.02.001

Bahemuka, Ubaldo M; Okimat, Paul; Webb, Emily L; Seeley, Janet; Ssetaala, Ali; Okech, Brenda; Oketch, Bertha; Kibengo, Freddie M; Okello, Elialilia; Kwena, Zachary; +6 more... Kuteesa, Monica O; Price, Matt A; Kaleebu, Pontiano; Grosskurth, Heiner; Fast, Pat; LVCHR; (2022) Factors Associated with Short and Long Term Mobility and HIV Risk of Women Living in Fishing Communities Around Lake Victoria in Kenya, Tanzania, and Uganda: A Cross Sectional Survey. AIDS and Behavior, 27 (3). pp. 880-890. ISSN 1090-7165 DOI: https://doi.org/10.1007/s10461-022-03824-0

Balinda, Sheila N; Kapaata, Anne; Xu, Rui; Salazar, Maria G; Mezzell, Allison T; Qin, Qianhong; Herard, Kimberly; Dilernia, Dario; Kamali, Anatoli; Ruzagira, Eugene; +8 more... Kibengo, Freddie M; Song, Heeyah; Ochsenbauer, Christina; Salazar-Gonzalez, Jesus F; Gilmour, Jill; Hunter, Eric; Yue, Ling; Kaleebu, Pontiano; (2022) Characterization of Near Full-Length Transmitted/Founder HIV-1 Subtype D and A/D Recombinant Genomes in a Heterosexual Ugandan Population (2006-2011). Viruses, 14 (2). p. 334. ISSN 1999-4915 DOI: https://doi.org/10.3390/v14020334

Barr, AL; Young, EH; Smeeth, L; Newton, R; Seeley, J; Ripullone, K; Hird, TR; Thornton, JRM; Nyirenda, MJ; Kapiga, S; +12 more... Adebamowo, CA; Amoah, AG; Wareham, N; Rotimi, CN; Levitt, NS; Ramaiya, K; Hennig, BJ; Mbanya, JC; Tollman, S; Motala, AA; Kaleebu, P; Sandhu, MS; (2016) The need for an integrated approach for chronic disease research and care in Africa. Glob Health Epidemiol Genom, 1. e19-. ISSN 2054-4200 DOI: https://doi.org/10.1017/gheg.2016.16

Bbosa, Nicholas; Kaleebu, Pontiano; Ssemwanga, Deogratius; (2019) HIV subtype diversity worldwide. Current opinion in HIV and AIDS, 14 (3). pp. 153-160. ISSN 1746-630X DOI: https://doi.org/10.1097/COH.0000000000000534

Bbosa, Nicholas; Ssemwanga, Deogratius; Kaleebu, Pontiano; (2020) Short Communication: Choosing the Right Program for the Identification of HIV-1 Transmission Networks from Nucleotide Sequences Sampled from Different Populations. AIDS research and human retroviruses, 36 (11). pp. 948-951. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2020.0033

Bbosa, Nicholas; Ssemwanga, Deogratius; Namagembe, Hamidah; Kiiza, Ronald; Kiconco, Jocelyn; Kayiwa, John; Lutalo, Tom; Lutwama, Julius; Ssekagiri, Alfred; Ssewanyana, Isaac; +13 more... Nabadda, Susan; Kyobe-Bbosa, Henry; Giandhari, Jennifer; Pillay, Sureshnee; Ramphal, Upasana; Ramphal, Yajna; Naidoo, Yeshnee; Tshiabuila, Derek; Tegally, Houriiyah; San, Emmanuel J; Wilkinson, Eduan; de Oliveira, Tulio; Kaleebu, Pontiano; (2022) Rapid Replacement of SARS-CoV-2 Variants by Delta and Subsequent Arrival of Omicron, Uganda, 2021. EMERGING INFECTIOUS DISEASES, 28 (5). pp. 1021-1025. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2805.220121

Bbosa, Nicholas; Ssemwanga, Deogratius; Nsubuga, Rebecca N; Kiwanuka, Noah; Bagaya, Bernard S; Kitayimbwa, John M; Ssekagiri, Alfred; Yebra, Gonzalo; Kaleebu, Pontiano; Leigh-Brown, Andrew; (2021) Phylogenetic Networks and Parameters Inferred from HIV Nucleotide Sequences of High-Risk and General Population Groups in Uganda: Implications for Epidemic Control. Viruses, 13 (6). p. 970. ISSN 1999-4915 DOI: https://doi.org/10.3390/v13060970

Bbosa, Nicholas; Ssemwanga, Deogratius; Nsubuga, Rebecca N; Salazar-Gonzalez, Jesus F; Salazar, Maria G; Nanyonjo, Maria; Kuteesa, Monica; Seeley, Janet; Kiwanuka, Noah; Bagaya, Bernard S; +3 more... Yebra, Gonzalo; Leigh-Brown, Andrew; Kaleebu, Pontiano; (2019) Phylogeography of HIV-1 suggests that Ugandan fishing communities are a sink for, not a source of, virus from general populations. Scientific reports, 9 (1). 1051-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-37458-x

Bbosa, Nicholas; Ssemwanga, Deogratius; Ssekagiri, Alfred; Xi, Xiaoyue; Mayanja, Yunia; Bahemuka, Ubaldo; Seeley, Janet; Pillay, Deenan; Abeler-Dörner, Lucie; Golubchik, Tanya; +3 more... Fraser, Christophe; Kaleebu, Pontiano; Ratmann, Oliver; (2020) Phylogenetic and Demographic Characterization of Directed HIV-1 Transmission Using Deep Sequences from High-Risk and General Population Cohorts/Groups in Uganda. Viruses, 12 (3). p. 331. DOI: https://doi.org/10.3390/v12030331

Birungi, J; Cui, Z; Okoboi, S; Kapaata, A; Munderi, P; Mukajjanga, C; Nanfuka, M; Nyonyintono, MS; Kim, J; Zhu, J; +2 more... Kaleebu, P; Moore, DM; (2020) Lack of effectiveness of adherence counselling in reversing virological failure among patients on long-term antiretroviral therapy in rural Uganda. HIV medicine, 21 (1). pp. 21-29. ISSN 1464-2662 DOI: https://doi.org/10.1111/hiv.12790

Birungi, Josephine; Min, Jeong Eun; Muldoon, Katherine A; Kaleebu, Pontiano; King, Rachel; Khanakwa, Sarah; Nyonyintono, Maureen; Chen, YaLin; Mills, Edward J; Lyagoba, Fred; +4 more... Ragonnet-Cronin, Manon; Wangisi, Jonathan; Lourenco, Lillian; Moore, David M; (2015) Lack of Effectiveness of Antiretroviral Therapy in Preventing HIV Infection in Serodiscordant Couples in Uganda: An Observational Study. PloS one, 10 (7). e0132182-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0132182

Brown, M; Mawa, PA; Kaleebu, P; Elliott, AM; (2006) Helminths and HIV infection: epidemiological observations on immunological hypotheses. Parasite immunology, 28 (11). pp. 613-623. ISSN 0141-9838 DOI: https://doi.org/10.1111/j.1365-3024.2006.00904.x

Bugembe, Daniel Lule; Ekii, Andrew Obuku; Ndembi, Nicaise; Serwanga, Jennifer; Kaleebu, Pontiano; Pala, Pietro; (2020) Computational MHC-I epitope predictor identifies 95% of experimentally mapped HIV-1 clade A and D epitopes in a Ugandan cohort. BMC infectious diseases, 20 (1). 172-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-020-4876-4

Bugembe, Daniel Lule; Kayiwa, John; Phan, My VT; Tushabe, Phiona; Balinandi, Stephen; Dhaala, Beatrice; Lexow, Jonas; Mwebesa, Henry; Aceng, Jane; Kyobe, Henry; +4 more... Ssemwanga, Deogratius; Lutwama, Julius; Kaleebu, Pontiano; Cotten, Matthew; (2020) Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda. EMERGING INFECTIOUS DISEASES, 26 (10). pp. 2411-2415. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2610.202575

Bugembe, Daniel Lule; Phan, My VT; Abias, Abe G; Ayei, James; Deng, Lul Lojok; Lako, Richard Lino Loro; Rumunu, John; Kaleebu, Pontiano; Wamala, Joseph Francis; Hm, Juma John; +3 more... Lodiongo, Dennis Kenyi; Bunga, Sudhir; Cotten, Matthew; (2021) SARS-CoV-2 Variants, South Sudan, January-March 2021. Emerging Infectious Diseases, 27 (12). pp. 3133-3136. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2712.211488

Bugembe, Daniel Lule; Phan, My VT; Ssewanyana, Isaac; Semanda, Patrick; Nansumba, Hellen; Dhaala, Beatrice; Nabadda, Susan; O'Toole, Áine Niamh; Rambaut, Andrew; Kaleebu, Pontiano; +1 more... Cotten, Matthew; (2021) Emergence and spread of a SARS-CoV-2 lineage A variant (A.23.1) with altered spike protein in Uganda. Nature microbiology, 6 (8). pp. 1094-1101. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-021-00933-9

Bwogi, Josephine; Lutalo, Tom; Tushabe, Phionah; Bukenya, Henry; Eliku, James Peter; Ssewanyana, Isaac; Nabadda, Susan; Nsereko, Christopher; Cotten, Matthew; Downing, Robert; +4 more... Lutwama, Julius; Kaleebu, Pontiano; EPI Laboratory team; UVRI -COVID 19 Technical team; (2022) Field evaluation of the performance of seven Antigen Rapid diagnostic tests for the diagnosis of SARs-CoV-2 virus infection in Uganda. PloS one, 17 (5). e0265334-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0265334

Chantler, Tracey; Cheah, Phaik Yeong; Miiro, George; Hantrakum, Viriya; Nanvubya, Annet; Ayuo, Elizabeth; Kivaya, Esther; Kidola, Jeremiah; Kaleebu, Pontiano; Parker, Michael; +4 more... Njuguna, Patricia; Ashley, Elizabeth; Guerin, Philippe J; Lang, Trudie; (2014) International health research monitoring: exploring a scientific and a cooperative approach using participatory action research. BMJ open, 4 (2). e004104-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2013-004104

Cooke, Graham S; Tosh, Kerrie; Ramaley, Patricia A; Kaleebu, Pontiano; Zhuang, Joanna; Nakiyingi, Jessica S; Watera, Christine; Gilks, Charles F; French, Neil; Whitworth, James AG; +1 more... Hill, Adrian VS; (2006) A polymorphism that reduces RANTES expression is associated with protection from death in HIV-seropositive Ugandans with advanced disease. The Journal of infectious diseases, 194 (5). pp. 666-669. ISSN 0022-1899 DOI: https://doi.org/10.1086/505875 Full text not available from this repository.

Cose, Stephen; Bagaya, Bernard; Nerima, Barbara; Joloba, Moses; Kambugu, Andrew; Tweyongyere, Robert; Dunne, David W; Mbidde, Edward; Kaleebu, Pontiano; Elliott, Alison M; (2015) Immunology in Africa. Tropical medicine & international health, 20 (12). pp. 1771-1777. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12599

Cotten, Matthew; Lule Bugembe, Dan; Kaleebu, Pontiano; V T Phan, My; (2021) Alternate primers for whole-genome SARS-CoV-2 sequencing. Virus evolution, 7 (1). veab006-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/veab006

DART Trial Team; Mugyenyi, P; Walker, AS; Hakim, J; Munderi, P; Gibb, DM; Kityo, C; Reid, A; Grosskurth, H; Darbyshire, JH; +257 more... Ssali, F; Bray, D; Katabira, E; Babiker, AG; Gilks, CF; Grosskurth, H; Munderi, P; Kabuye, G; Nsibambi, D; Kasirye, R; Zalwango, E; Nakazibwe, M; Kikaire, B; Nassuna, G; Massa, R; Fadhiru, K; Namyalo, M; Zalwango, A; Generous, L; Khauka, P; Rutikarayo, N; Nakahima, W; Mugisha, A; Todd, J; Levin, J; Muyingo, S; Ruberantwari, A; Kaleebu, P; Yirrell, D; Ndembi, N; Lyagoba, F; Hughes, P; Aber, M; Lara, A Medina; Foster, S; Amurwon, J; Wakholi, B Nyanzi; Whitworth, J; Wangati, K; Amuron, B; Kajungu, D; Nakiyingi, J; Omony, W; Fadhiru, K; Nsibambi, D; Khauka, P; Mugyenyi, P; Kityo, C; Ssali, F; Tumukunde, D; Otim, T; Kabanda, J; Musana, H; Akao, J; Kyomugisha, H; Byamukama, A; Sabiiti, J; Komugyena, J; Wavamunno, P; Mukiibi, S; Drasiku, A; Byaruhanga, R; Labeja, O; Katundu, P; Tugume, S; Awio, P; Namazzi, A; Bakeinyaga, GT; Katabira, H; Abaine, D; Tukamushaba, J; Anywar, W; Ojiambo, W; Angweng, E; Murungi, S; Haguma, W; Atwiine, S; Kigozi, J; Namale, L; Mukose, A; Mulindwa, G; Atwiine, D; Muhwezi, A; Nimwesiga, E; Barungi, G; Takubwa, J; Murungi, S; Mwebesa, D; Kagina, G; Mulindwa, M; Ahimbisibwe, F; Mwesigwa, P; Akuma, S; Zawedde, C; Nyiraguhirwa, D; Tumusiime, C; Bagaya, L; Namara, W; Kigozi, J; Karungi, J; Kankunda, R; Enzama, R; Latif, A; Hakim, J; Robertson, V; Reid, A; Chidziva, E; Bulaya-Tembo, R; Musoro, G; Taziwa, F; Chimbetete, C; Chakonza, L; Mawora, A; Muvirimi, C; Tinago, G; Svovanapasis, P; Simango, M; Chirema, O; Machingura, J; Mutsai, S; Phiri, M; Bafana, T; Chirara, M; Muchabaiwa, L; Muzambi, M; Mutowo, J; Chivhunga, T; Chigwedere, E; Pascoe, M; Warambwa, C; Zengeza, E; Mapinge, F; Makota, S; Jamu, A; Ngorima, N; Chirairo, H; Chitsungo, S; Chimanzi, J; Maweni, C; Warara, R; Matongo, M; Mudzingwa, S; Jangano, M; Moyo, K; Vere, L; Mdege, N; Machingura, I; Katabira, E; Ronald, A; Kambungu, A; Lutwama, F; Mambule, I; Nanfuka, A; Walusimbi, J; Nabankema, E; Nalumenya, R; Namuli, T; Kulume, R; Namata, I; Nyachwo, L; Florence, A; Kusiima, A; Lubwama, E; Nairuba, R; Oketta, F; Buluma, E; Waita, R; Ojiambo, H; Sadik, F; Wanyama, J; Nabongo, P; Oyugi, J; Sematala, F; Muganzi, A; Twijukye, C; Byakwaga, H; Ochai, R; Muhweezi, D; Coutinho, A; Etukoit, B; Gilks, C; Boocock, K; Puddephatt, C; Grundy, C; Bohannon, J; Winogron, D; Gibb, DM; Burke, A; Bray, D; Babiker, A; Walker, AS; Wilkes, H; Rauchenberger, M; Sheehan, S; Spencer-Drake, C; Taylor, K; Spyer, M; Ferrier, A; Naidoo, B; Dunn, D; Goodall, R; Darbyshire, JH; Peto, L; Nanfuka, R; Mufuka-Kapuya, C; Kaleebu, P; Pillay, D; Robertson, V; Yirrell, D; Tugume, S; Chirara, M; Katundu, P; Ndembi, N; Lyagoba, F; Dunn, D; Goodall, R; McCormick, A; Lara, A Medina; Foster, S; Amurwon, J; Wakholi, B Nyanzi; Kigozi, J; Muchabaiwa, L; Muzambi, M; Weller, I; Babiker, A; Bahendeka, S; Bassett, M; Wapakhabulo, A Chogo; Darbyshire, JH; Gazzard, B; Gilks, C; Grosskurth, H; Hakim, J; Latif, A; Mapuchere, C; Mugurungi, O; Mugyenyi, P; Burke, C; Jones, S; Newland, C; Pearce, G; Rahim, S; Rooney, J; Smith, M; Snowden, W; Steens, J-M; Breckenridge, A; McLaren, A; Hill, C; Matenga, J; Pozniak, A; Serwadda, D; Peto, T; Palfreeman, A; Borok, M; Katabira, E; (2010) Routine versus clinically driven laboratory monitoring of HIV antiretroviral therapy in Africa (DART): a randomised non-inferiority trial. Lancet, 375 (9709). pp. 123-131. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(09)62067-5

Davis, Chris; Mgomella, George S; da Silva Filipe, Ana; Frost, Eric H; Giroux, Genevieve; Hughes, Joseph; Hogan, Catherine; Kaleebu, Pontiano; Asiki, Gershim; McLauchlan, John; +13 more... Niebel, Marc; Ocama, Ponsiano; Pomila, Cristina; Pybus, Oliver G; Pépin, Jacques; Simmonds, Peter; Singer, Joshua B; Sreenu, Vattipally B; Wekesa, Clara; Young, Elizabeth H; Murphy, Donald G; Sandhu, Manj; Thomson, Emma C; (2018) Highly Diverse Hepatitis C Strains Detected in Sub-Saharan Africa Have Unknown Susceptibility to Direct-Acting Antiviral Treatments. Hepatology (Baltimore, Md), 69 (4). pp. 1426-1441. ISSN 0270-9139 DOI: https://doi.org/10.1002/hep.30342

Dillon, David G; Gurdasani, Deepti; Riha, Johanna; Ekoru, Kenneth; Asiki, Gershim; Mayanja, Billy N; Levitt, Naomi S; Crowther, Nigel J; Nyirenda, Moffat; Njelekela, Marina; +41 more... Ramaiya, Kaushik; Nyan, Ousman; Adewole, Olanisun O; Anastos, Kathryn; Azzoni, Livio; Boom, W Henry; Compostella, Caterina; Dave, Joel A; Dawood, Halima; Erikstrup, Christian; Fourie, Carla M; Friis, Henrik; Kruger, Annamarie; Idoko, John A; Longenecker, Chris T; Mbondi, Suzanne; Mukaya, Japheth E; Mutimura, Eugene; Ndhlovu, Chiratidzo E; Praygod, George; Pefura Yone, Eric W; Pujades-Rodriguez, Mar; Range, Nyagosya; Sani, Mahmoud U; Schutte, Aletta E; Sliwa, Karen; Tien, Phyllis C; Vorster, Este H; Walsh, Corinna; Zinyama, Rutendo; Mashili, Fredirick; Sobngwi, Eugene; Adebamowo, Clement; Kamali, Anatoli; Seeley, Janet; Young, Elizabeth H; Smeeth, Liam; Motala, Ayesha A; Kaleebu, Pontiano; Sandhu, Manjinder S; African Partnership for Chronic Disease Research (APCDR); (2013) Association of HIV and ART with cardiometabolic traits in sub-Saharan Africa: a systematic review and meta-analysis. International journal of epidemiology, 42 (6). pp. 1754-1771. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyt198

Do, Ron; Willer, Cristen J; Schmidt, Ellen M; Sengupta, Sebanti; Gao, Chi; Peloso, Gina M; Gustafsson, Stefan; Kanoni, Stavroula; Ganna, Andrea; Chen, Jin; +253 more... Buchkovich, Martin L; Mora, Samia; Beckmann, Jacques S; Bragg-Gresham, Jennifer L; Chang, Hsing-Yi; Demirkan, Ayşe; Den Hertog, Heleen M; Donnelly, Louise A; Ehret, Georg B; Esko, Tõnu; Feitosa, Mary F; Ferreira, Teresa; Fischer, Krista; Fontanillas, Pierre; Fraser, Ross M; Freitag, Daniel F; Gurdasani, Deepti; Heikkilä, Kauko; Hyppönen, Elina; Isaacs, Aaron; Jackson, Anne U; Johansson, Asa; Johnson, Toby; Kaakinen, Marika; Kettunen, Johannes; Kleber, Marcus E; Li, Xiaohui; Luan, Jian'an; Lyytikäinen, Leo-Pekka; Magnusson, Patrik KE; Mangino, Massimo; Mihailov, Evelin; Montasser, May E; Müller-Nurasyid, Martina; Nolte, Ilja M; O'Connell, Jeffrey R; Palmer, Cameron D; Perola, Markus; Petersen, Ann-Kristin; Sanna, Serena; Saxena, Richa; Service, Susan K; Shah, Sonia; Shungin, Dmitry; Sidore, Carlo; Song, Ci; Strawbridge, Rona J; Surakka, Ida; Tanaka, Toshiko; Teslovich, Tanya M; Thorleifsson, Gudmar; Van den Herik, Evita G; Voight, Benjamin F; Volcik, Kelly A; Waite, Lindsay L; Wong, Andrew; Wu, Ying; Zhang, Weihua; Absher, Devin; Asiki, Gershim; Barroso, Inês; Been, Latonya F; Bolton, Jennifer L; Bonnycastle, Lori L; Brambilla, Paolo; Burnett, Mary S; Cesana, Giancarlo; Dimitriou, Maria; Doney, Alex SF; Döring, Angela; Elliott, Paul; Epstein, Stephen E; Eyjolfsson, Gudmundur Ingi; Gigante, Bruna; Goodarzi, Mark O; Grallert, Harald; Gravito, Martha L; Groves, Christopher J; Hallmans, Göran; Hartikainen, Anna-Liisa; Hayward, Caroline; Hernandez, Dena; Hicks, Andrew A; Holm, Hilma; Hung, Yi-Jen; Illig, Thomas; Jones, Michelle R; Kaleebu, Pontiano; Kastelein, John JP; Khaw, Kay-Tee; Kim, Eric; Klopp, Norman; Komulainen, Pirjo; Kumari, Meena; Langenberg, Claudia; Lehtimäki, Terho; Lin, Shih-Yi; Lindström, Jaana; Loos, Ruth JF; Mach, François; McArdle, Wendy L; Meisinger, Christa; Mitchell, Braxton D; Müller, Gabrielle; Nagaraja, Ramaiah; Narisu, Narisu; Nieminen, Tuomo VM; Nsubuga, Rebecca N; Olafsson, Isleifur; Ong, Ken K; Palotie, Aarno; Papamarkou, Theodore; Pomilla, Cristina; Pouta, Anneli; Rader, Daniel J; Reilly, Muredach P; Ridker, Paul M; Rivadeneira, Fernando; Rudan, Igor; Ruokonen, Aimo; Samani, Nilesh; Scharnagl, Hubert; Seeley, Janet; Silander, Kaisa; Stančáková, Alena; Stirrups, Kathleen; Swift, Amy J; Tiret, Laurence; Uitterlinden, Andre G; van Pelt, L Joost; Vedantam, Sailaja; Wainwright, Nicholas; Wijmenga, Cisca; Wild, Sarah H; Willemsen, Gonneke; Wilsgaard, Tom; Wilson, James F; Young, Elizabeth H; Zhao, Jing Hua; Adair, Linda S; Arveiler, Dominique; Assimes, Themistocles L; Bandinelli, Stefania; Bennett, Franklyn; Bochud, Murielle; Boehm, Bernhard O; Boomsma, Dorret I; Borecki, Ingrid B; Bornstein, Stefan R; Bovet, Pascal; Burnier, Michel; Campbell, Harry; Chakravarti, Aravinda; Chambers, John C; Chen, Yii-Der Ida; Collins, Francis S; Cooper, Richard S; Danesh, John; Dedoussis, George; de Faire, Ulf; Feranil, Alan B; Ferrières, Jean; Ferrucci, Luigi; Freimer, Nelson B; Gieger, Christian; Groop, Leif C; Gudnason, Vilmundur; Gyllensten, Ulf; Hamsten, Anders; Harris, Tamara B; Hingorani, Aroon; Hirschhorn, Joel N; Hofman, Albert; Hovingh, G Kees; Hsiung, Chao Agnes; Humphries, Steve E; Hunt, Steven C; Hveem, Kristian; Iribarren, Carlos; Järvelin, Marjo-Riitta; Jula, Antti; Kähönen, Mika; Kaprio, Jaakko; Kesäniemi, Antero; Kivimaki, Mika; Kooner, Jaspal S; Koudstaal, Peter J; Krauss, Ronald M; Kuh, Diana; Kuusisto, Johanna; Kyvik, Kirsten O; Laakso, Markku; Lakka, Timo A; Lind, Lars; Lindgren, Cecilia M; Martin, Nicholas G; März, Winfried; McCarthy, Mark I; McKenzie, Colin A; Meneton, Pierre; Metspalu, Andres; Moilanen, Leena; Morris, Andrew D; Munroe, Patricia B; Njølstad, Inger; Pedersen, Nancy L; Power, Chris; Pramstaller, Peter P; Price, Jackie F; Psaty, Bruce M; Quertermous, Thomas; Rauramaa, Rainer; Saleheen, Danish; Salomaa, Veikko; Sanghera, Dharambir K; Saramies, Jouko; Schwarz, Peter EH; Sheu, Wayne H-H; Shuldiner, Alan R; Siegbahn, Agneta; Spector, Tim D; Stefansson, Kari; Strachan, David P; Tayo, Bamidele O; Tremoli, Elena; Tuomilehto, Jaakko; Uusitupa, Matti; van Duijn, Cornelia M; Vollenweider, Peter; Wallentin, Lars; Wareham, Nicholas J; Whitfield, John B; Wolffenbuttel, Bruce HR; Altshuler, David; Ordovas, Jose M; Boerwinkle, Eric; Palmer, Colin NA; Thorsteinsdottir, Unnur; Chasman, Daniel I; Rotter, Jerome I; Franks, Paul W; Ripatti, Samuli; Cupples, L Adrienne; Sandhu, Manjinder S; Rich, Stephen S; Boehnke, Michael; Deloukas, Panos; Mohlke, Karen L; Ingelsson, Erik; Abecasis, Goncalo R; Daly, Mark J; Neale, Benjamin M; Kathiresan, Sekar; (2013) Common variants associated with plasma triglycerides and risk for coronary artery disease. NATURE GENETICS, 45 (11). pp. 1345-1352. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.2795

Dolling, David I; Goodall, Ruth L; Chirara, Michael; Hakim, James; Nkurunziza, Peter; Munderi, Paula; Eram, David; Tumukunde, Dinah; Spyer, Moira J; Gilks, Charles F; +4 more... Kaleebu, Pontiano; Dunn, David T; Pillay, Deenan; DART Virology Group; (2017) The virological durability of first-line ART among HIV-positive adult patients in resource limited settings without virological monitoring: a retrospective analysis of DART trial data. BMC infectious diseases, 17 (1). 160-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2266-3

Dunn, DT; Goodall, RL; Munderi, P; Kityo, C; Ranopa, M; Bacheler, L; Van Houtte, M; Gilks, C; Kaleebu, P; Pillay, D; +1 more... DART Virology and Trial Team; (2011) Residual activity of two HIV antiretroviral regimens prescribed without virological monitoring. Antimicrobial agents and chemotherapy, 55 (10). pp. 4575-4580. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00580-11 Full text not available from this repository.

Ekoru, K; Murphy, GAV; Young, EH; Delisle, H; Jerome, CS; Assah, F; Longo-Mbenza, B; Nzambi, JPD; On'Kin, JBK; Buntix, F; +33 more... Muyer, MC; Christensen, DL; Wesseh, CS; Sabir, A; Okafor, C; Gezawa, ID; Puepet, F; Enang, O; Raimi, T; Ohwovoriole, E; Oladapo, OO; Bovet, P; Mollentze, W; Unwin, N; Gray, WK; Walker, R; Agoudavi, K; Siziya, S; Chifamba, J; Njelekela, M; Fourie, CM; Kruger, S; Schutte, AE; Walsh, C; Gareta, D; Kamali, A; Seeley, J; Norris, SA; Crowther, NJ; Pillay, D; Kaleebu, P; Motala, AA; Sandhu, MS; (2017) Deriving an optimal threshold of waist circumference for detecting cardiometabolic risk in sub-Saharan Africa. Int J Obes (Lond), 42 (3). pp. 487-494. ISSN 1476-5497 DOI: https://doi.org/10.1038/ijo.2017.240

Ekoru, K; Young, EH; Adebamowo, C; Balde, N; Hennig, BJ; Kaleebu, P; Kapiga, S; Levitt, NS; Mayige, M; Mbanya, JC; +10 more... McCarthy, MI; Nyan, O; Nyirenda, M; Oli, J; Ramaiya, K; Smeeth, L; Sobngwi, E; Rotimi, CN; Sandhu, MS; Motala, AA; (2016) H3Africa multi-centre study of the prevalence and environmental and genetic determinants of type 2 diabetes in sub-Saharan Africa: study protocol. Glob Health Epidemiol Genom, 1. e5-. ISSN 2054-4200 DOI: https://doi.org/10.1017/gheg.2015.6

Ekoru, Kenneth; Young, Elizabeth H; Dillon, David G; Gurdasani, Deepti; Stehouwer, Nathan; Faurholt-Jepsen, Daniel; Levitt, Naomi S; Crowther, Nigel J; Nyirenda, Moffat; Njelekela, Marina A; +35 more... Ramaiya, Kaushik; Nyan, Ousman; Adewole, Olanisun O; Anastos, Kathryn; Compostella, Caterina; Dave, Joel A; Fourie, Carla M; Friis, Henrik; Kruger, Iolanthe M; Longenecker, Chris T; Maher, Dermot P; Mutimura, Eugene; Ndhlovu, Chiratidzo E; Praygod, George; Pefura Yone, Eric W; Pujades-Rodriguez, Mar; Range, Nyagosya; Sani, Mahmoud U; Sanusi, Muhammad; Schutte, Aletta E; Sliwa, Karen; Tien, Phyllis C; Vorster, Este H; Walsh, Corinna; Gareta, Dickman; Mashili, Fredirick; Sobngwi, Eugene; Adebamowo, Clement; Kamali, Anatoli; Seeley, Janet; Smeeth, Liam; Pillay, Deenan; Motala, Ayesha A; Kaleebu, Pontiano; Sandhu, Manjinder S; (2018) HIV treatment is associated with a two-fold higher probability of raised triglycerides: Pooled Analyses in 21 023 individuals in sub-Saharan Africa. Glob Health Epidemiol Genom, 3. ISSN 2054-4200 DOI: https://doi.org/10.1017/gheg.2018.7

Elliott, Alison M; Roestenberg, Meta; Wajja, Anne; Opio, Christopher; Angumya, Francis; Adriko, Moses; Egesa, Moses; Gitome, Serah; Mfutso-Bengo, Joseph; Bejon, Philip; +9 more... Kapulu, Melissa; Seager, Zoe; Lutalo, Tom; Nazziwa, Winfred Badanga; Muwumuza, Asuman; Yazdanbakhsh, Maria; Kaleebu, Pontiano; Kabatereine, Narcis; Tukahebwa, Edridah; (2018) Ethical and scientific considerations on the establishment of a controlled human infection model for schistosomiasis in Uganda: report of a stakeholders’ meeting held in Entebbe, Uganda. AAS Open Research, 1. p. 2. ISSN 2515-9321 DOI: https://doi.org/10.12688/aasopenres.12841.2

Elliott, Alison M; Roestenberg, Meta; Wajja, Anne; Opio, Christopher; Angumya, Francis; Adriko, Moses; Egesa, Moses; Gitome, Serah; Mfutso-Bengo, Joseph; Bejon, Philip; +9 more... Kapulu, Melissa; Seager, Zoe; Lutalo, Tom; Nazziwa, Winfred Badanga; Muwumuza, Asuman; Yazdanbakhsh, Maria; Kaleebu, Pontiano; Kabatereine, Narcis; Tukahebwa, Edridah; (2018) Ethical and scientific considerations on the establishment of a controlled human infection model for schistosomiasis in Uganda: report of a stakeholders' meeting held in Entebbe, Uganda. AAS open research, 1. 2-. DOI: https://doi.org/10.12688/aasopenres.12841.2

Elliott, Alison; Nerima, Barbara; Bagaya, Bernard; Kambugu, Andrew; Joloba, Moses; Cose, Stephen; Pantaleo, Guiseppe; Yazdanbakhsh, Maria; Mabey, David; Dunne, David; +4 more... Moffett, Ashley; Rwakishaya, Eli Katunguka; Kaleebu, Pontiano; Mbidde, Edward Katongole; (2015) Capacity for science in sub-Saharan Africa. Lancet, 385 (9986). pp. 2435-2437. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(15)61111-4 Full text not available from this repository.

Fatumo, Segun; Carstensen, Tommy; Nashiru, Oyekanmi; Gurdasani, Deepti; Sandhu, Manjinder; Kaleebu, Pontiano; (2019) Complimentary Methods for Multivariate Genome-Wide Association Study Identify New Susceptibility Genes for Blood Cell Traits. Frontiers in Genetics, 10 (APR). 334-. DOI: https://doi.org/10.3389/fgene.2019.00334

Fatumo, Segun; Chikowore, Tinashe; Kalyesubula, Robert; Nsubuga, Rebecca N; Asiki, Gershim; Nashiru, Oyekanmi; Seeley, Janet; Crampin, Amelia C; Nitsch, Dorothea; Smeeth, Liam; +7 more... Kaleebu, Pontiano; Burgess, Stephen; Nyirenda, Moffat; Franceschini, Nora; Morris, Andrew P; Tomlinson, Laurie; Newton, Robert; (2021) Discovery and fine-mapping of kidney function loci in first genome-wide association study in Africans. Human molecular genetics, 30 (16). pp. 1559-1568. ISSN 0964-6906 DOI: https://doi.org/10.1093/hmg/ddab088

Fily, F; Ayikobua, E; Ssemwanga, D; Nicholas, S; Kaleebu, P; Delaugerre, C; Pasquier, E; Amoros Quiles, I; Balkan, S; Schramm, B; (2018) HIV-1 drug resistance testing at second-line regimen failure in Arua, Uganda: avoiding unnecessary switch to an empiric third-line. Tropical medicine & international health, 23 (10). pp. 1075-1083. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.13131 Full text not available from this repository.

French, N; Kaleebu, P; Pisani, E; Whitworth, JAG; (2006) Human immunodeficiency virus (HIV) in developing countries. Annals of tropical medicine and parasitology, 100 (5-6). pp. 433-454. ISSN 0003-4983 DOI: https://doi.org/10.1179/136485906X97390 Full text not available from this repository.

Froebel, K; Howard, W; Schafer, JR; Howie, F; Whitworth, J; Kaleebu, P; Brown, AL; Riley, E; (2004) Activation by malaria antigens renders mononuclear cells susceptible to HIV infection and re-activates replication of endogenous HIV in cells from HIV-infected adults. Parasite immunology, 26 (5). pp. 213-217. ISSN 0141-9838 DOI: https://doi.org/10.1111/j.0141-9838.2004.00701.x Full text not available from this repository.

Gale, Catherine V; Yirrell, David L; Campbell, Eileen; Van der Paal, Lieve; Grosskurth, Heiner; Kaleebu, Pontiano; (2006) Genotypic variation in the pol gene of HIV type 1 in an antiretroviral treatment-naive population in rural southwestern Uganda. AIDS research and human retroviruses, 22 (10). pp. 985-992. ISSN 0889-2229 DOI: https://doi.org/10.1089/aid.2006.22.985 Full text not available from this repository.

Global Cardiovascular Risk Consortium; Magnussen, Christina; Ojeda, Francisco M; Leong, Darryl P; Alegre-Diaz, Jesus; Amouyel, Philippe; Aviles-Santa, Larissa; De Bacquer, Dirk; Ballantyne, Christie M; Bernabé-Ortiz, Antonio; +82 more... Bobak, Martin; Brenner, Hermann; Carrillo-Larco, Rodrigo M; de Lemos, James; Dobson, Annette; Dörr, Marcus; Donfrancesco, Chiara; Drygas, Wojciech; Dullaart, Robin P; Engström, Gunnar; Ferrario, Marco M; Ferrières, Jean; de Gaetano, Giovanni; Goldbourt, Uri; Gonzalez, Clicerio; Grassi, Guido; Hodge, Allison M; Hveem, Kristian; Iacoviello, Licia; Ikram, M Kamran; Irazola, Vilma; Jobe, Modou; Jousilahti, Pekka; Kaleebu, Pontiano; Kavousi, Maryam; Kee, Frank; Khalili, Davood; Koenig, Wolfgang; Kontsevaya, Anna; Kuulasmaa, Kari; Lackner, Karl J; Leistner, David M; Lind, Lars; Linneberg, Allan; Lorenz, Thiess; Lyngbakken, Magnus Nakrem; Malekzadeh, Reza; Malyutina, Sofia; Mathiesen, Ellisiv B; Melander, Olle; Metspalu, Andres; Miranda, J Jaime; Moitry, Marie; Mugisha, Joseph; Nalini, Mahdi; Nambi, Vijay; Ninomiya, Toshiharu; Oppermann, Karen; d'Orsi, Eleonora; Pająk, Andrzej; Palmieri, Luigi; Panagiotakos, Demosthenes; Perianayagam, Arokiasamy; Peters, Annette; Poustchi, Hossein; Prentice, Andrew M; Prescott, Eva; Risérus, Ulf; Salomaa, Veikko; Sans, Susana; Sakata, Satoko; Schöttker, Ben; Schutte, Aletta E; Sepanlou, Sadaf G; Sharma, Sanjib Kumar; Shaw, Jonathan E; Simons, Leon A; Söderberg, Stefan; Tamosiunas, Abdonas; Thorand, Barbara; Tunstall-Pedoe, Hugh; Twerenbold, Raphael; Vanuzzo, Diego; Veronesi, Giovanni; Waibel, Julia; Wannamethee, S Goya; Watanabe, Masafumi; Wild, Philipp S; Yao, Yao; Zeng, Yi; Ziegler, Andreas; Blankenberg, Stefan; (2023) Global Effect of Modifiable Risk Factors on Cardiovascular Disease and Mortality. The New England journal of medicine, 389 (14). pp. 1273-1285. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa2206916

Gombe, Ben; Streatfield, Claire; Leal, Lorna; Opio, Solomon; Joseph, Sarah; Weber, Jonathan; Hare, Jonathan; Kaleebu, Pontiano; Serwanga, Jennifer; (2022) Optimization and validation of an ELISA assay for the determination of antibody responses to CN54gp140 and AIDSVAX BE for use in the Phase IIb PrEPVacc vaccine trial. PloS One, 17 (11). e0275927-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0275927

Goodall, RL; Dunn, DT; Pattery, T; van Cauwenberge, A; Nkurunziza, P; Awio, P; Ndembi, N; Munderi, P; Kityo, C; Gilks, CF; +3 more... Kaleebu, P; Pillay, D; DART Virology Group and Trial Teams; (2014) Phenotypic and genotypic analyses to guide selection of reverse transcriptase inhibitors in second-line HIV therapy following extended virological failure in Uganda. The Journal of antimicrobial chemotherapy, 69 (7). pp. 1938-1944. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dku052

Goodall, Ruth L; Dunn, David T; Nkurunziza, Peter; Mugarura, Lincoln; Pattery, Theresa; Munderi, Paula; Kityo, Cissy; Gilks, Charles; Kaleebu, Pontiano; Pillay, Deenan; +2 more... Gupta, Ravindra K; DART Virology Group; (2016) Rapid accumulation of HIV-1 thymidine analogue mutations and phenotypic impact following prolonged viral failure on zidovudine-based first-line ART in sub-Saharan Africa. The Journal of antimicrobial chemotherapy, 72 (5). pp. 1450-1455. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkw583

Gossez, Morgane; Martin, Genevieve Elizabeth; Pace, Matthew; Ramjee, Gita; Premraj, Anamika; Kaleebu, Pontiano; Rees, Helen; Inshaw, Jamie; Stöhr, Wolfgang; Meyerowitz, Jodi; +8 more... Hopkins, Emily; Jones, Mathew; Hurst, Jacob; Porter, Kholoud; Babiker, Abdel; Fidler, Sarah; Frater, John; SPARTAC Trial Investigators; (2018) Virological remission after antiretroviral therapy interruption in female African HIV seroconverters. AIDS (London, England), 33 (2). pp. 185-197. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000002044

Granger, Luke A; Huettner, Isabella; Debeljak, Franka; Kaleebu, Pontiano; Schechter, Mauro; Tambussi, Giuseppe; Weber, Jonathan; Miro, Jose M; Phillips, Rodney; Babiker, Abdel; +7 more... Cooper, David A; Fisher, Martin; Ramjee, Gita; Fidler, Sarah; Frater, John; Fox, Julie; Doores, Katie J; (2021) Broadly neutralizing antibody responses in the longitudinal primary HIV-1 infection Short Pulse Anti-Retroviral Therapy at Seroconversion cohort. AIDS (London, England), 35 (13). pp. 2073-2084. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000002988

Grant, Heather E; Hodcroft, Emma B; Ssemwanga, Deogratius; Kitayimbwa, John M; Yebra, Gonzalo; Esquivel Gomez, Luis Roger; Frampton, Dan; Gall, Astrid; Kellam, Paul; de Oliveira, Tulio; +12 more... Bbosa, Nicholas; Nsubuga, Rebecca N; Kibengo, Freddie; Kwan, Tsz Ho; Lycett, Samantha; Kao, Rowland; Robertson, David L; Ratmann, Oliver; Fraser, Christophe; Pillay, Deenan; Kaleebu, Pontiano; Leigh Brown, Andrew J; (2020) Pervasive and non-random recombination in near full-length HIV genomes from Uganda. Virus evolution, 6 (1). veaa004-. ISSN 2057-1577 DOI: https://doi.org/10.1093/ve/veaa004

Grant, Heather E; Roy, Sunando; Williams, Rachel; Tutill, Helena; Ferns, Bridget; Cane, Patricia A; Carswell, J Wilson; Ssemwanga, Deogratius; Kaleebu, Pontiano; Breuer, Judith; +1 more... Leigh Brown, Andrew J; (2022) A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism. Retrovirology, 19 (1). 28-. ISSN 1742-4690 DOI: https://doi.org/10.1186/s12977-022-00612-5

Gregson, John; Kaleebu, Pontiano; Marconi, Vincent C; van Vuuren, Cloete; Ndembi, Nicaise; Hamers, Raph L; Kanki, Phyllis; Hoffmann, Christopher J; Lockman, Shahin; Pillay, Deenan; +9 more... de Oliveira, Tulio; Clumeck, Nathan; Hunt, Gillian; Kerschberger, Bernhard; Shafer, Robert W; Yang, Chunfu; Raizes, Elliot; Kantor, Rami; Gupta, Ravindra K; (2016) Occult HIV-1 drug resistance to thymidine analogues following failure of first-line tenofovir combined with a cytosine analogue and nevirapine or efavirenz in sub Saharan Africa: a retrospective multi-centre cohort study. The Lancet infectious diseases, 17 (3). pp. 296-304. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(16)30469-8

Gupta, Ravindra K; Goodall, Ruth L; Ranopa, Michael; Kityo, Cissy; Munderi, Paula; Lyagoba, Fred; Mugarura, Lincoln; Gilks, Charles F; Kaleebu, Pontiano; Pillay, Deenan; +1 more... DART Virology Group and Trial Team; (2013) High rate of HIV resuppression after viral failure on first-line antiretroviral therapy in the absence of switch to second-line therapy. Clinical infectious diseases, 58 (7). pp. 1023-1026. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cit933

Gupta, Ravindra K; Gregson, John; Parkin, Neil; Haile-Selassie, Hiwot; Tanuri, Amilcar; Andrade Forero, Liliana; Kaleebu, Pontiano; Watera, Christine; Aghokeng, Avelin; Mutenda, Nicholus; +23 more... Dzangare, Janet; Hone, San; Hang, Zaw Zaw; Garcia, Judith; Garcia, Zully; Marchorro, Paola; Beteta, Enrique; Giron, Amalia; Hamers, Raph; Inzaule, Seth; Frenkel, Lisa M; Chung, Michael H; de Oliveira, Tulio; Pillay, Deenan; Naidoo, Kogie; Kharsany, Ayesha; Kugathasan, Ruthiran; Cutino, Teresa; Hunt, Gillian; Avila Rios, Santiago; Doherty, Meg; Jordan, Michael R; Bertagnolio, Silvia; (2017) HIV-1 drug resistance before initiation or re-initiation of first-line antiretroviral therapy in low-income and middle-income countries: a systematic review and meta-regression analysis. The Lancet infectious diseases, 18 (3). pp. 346-355. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30702-8

Gurdasani, Deepti; Carstensen, Tommy; Fatumo, Segun; Chen, Guanjie; Franklin, Chris S; Prado-Martinez, Javier; Bouman, Heleen; Abascal, Federico; Haber, Marc; Tachmazidou, Ioanna; +47 more... Mathieson, Iain; Ekoru, Kenneth; DeGorter, Marianne K; Nsubuga, Rebecca N; Finan, Chris; Wheeler, Eleanor; Chen, Li; Cooper, David N; Schiffels, Stephan; Chen, Yuan; Ritchie, Graham RS; Pollard, Martin O; Fortune, Mary D; Mentzer, Alex J; Garrison, Erik; Bergström, Anders; Hatzikotoulas, Konstantinos; Adeyemo, Adebowale; Doumatey, Ayo; Elding, Heather; Wain, Louise V; Ehret, Georg; Auer, Paul L; Kooperberg, Charles L; Reiner, Alexander P; Franceschini, Nora; Maher, Dermot; Montgomery, Stephen B; Kadie, Carl; Widmer, Chris; Xue, Yali; Seeley, Janet; Asiki, Gershim; Kamali, Anatoli; Young, Elizabeth H; Pomilla, Cristina; Soranzo, Nicole; Zeggini, Eleftheria; Pirie, Fraser; Morris, Andrew P; Heckerman, David; Tyler-Smith, Chris; Motala, Ayesha A; Rotimi, Charles; Kaleebu, Pontiano; Barroso, Inês; Sandhu, Manj S; (2019) Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa. Cell, 179 (4). 984-1002.e36. ISSN 0092-8674 DOI: https://doi.org/10.1016/j.cell.2019.10.004

Gurdasani, Deepti; Carstensen, Tommy; Tekola-Ayele, Fasil; Pagani, Luca; Tachmazidou, Ioanna; Hatzikotoulas, Konstantinos; Karthikeyan, Savita; Iles, Louise; Pollard, Martin O; Choudhury, Ananyo; +32 more... Ritchie, Graham RS; Xue, Yali; Asimit, Jennifer; Nsubuga, Rebecca N; Young, Elizabeth H; Pomilla, Cristina; Kivinen, Katja; Rockett, Kirk; Kamali, Anatoli; Doumatey, Ayo P; Asiki, Gershim; Seeley, Janet; Sisay-Joof, Fatoumatta; Jallow, Muminatou; Tollman, Stephen; Mekonnen, Ephrem; Ekong, Rosemary; Oljira, Tamiru; Bradman, Neil; Bojang, Kalifa; Ramsay, Michele; Adeyemo, Adebowale; Bekele, Endashaw; Motala, Ayesha; Norris, Shane A; Pirie, Fraser; Kaleebu, Pontiano; Kwiatkowski, Dominic; Tyler-Smith, Chris; Rotimi, Charles; Zeggini, Eleftheria; Sandhu, Manjinder S; (2015) The African Genome Variation Project shapes medical genetics in Africa. NATURE, 517 (7534). pp. 327-332. ISSN 0028-0836 DOI: https://doi.org/10.1038/nature13997

Hassan, Amin S; Hare, Jonathan; Gounder, Kamini; Nazziwa, Jamirah; Karlson, Sara; Olsson, Linnéa; Streatfield, Claire; Kamali, Anatoli; Karita, Etienne; Kilembe, William; +11 more... Price, Matt A; Borrow, Persephone; Björkman, Per; Kaleebu, Pontiano; Allen, Susan; Hunter, Eric; Ndung'u, Thumbi; Gilmour, Jill; Rowland-Jones, Sarah; Esbjörnsson, Joakim; Sanders, Eduard J; (2021) A Stronger Innate Immune Response During Hyperacute Human Immunodeficiency Virus Type 1 (HIV-1) Infection Is Associated With Acute Retroviral Syndrome. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 73 (5). pp. 832-841. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab139

Herrera, Carolina; Serwanga, Jennifer; Else, Laura; Limakatso, Lebina; Opoka, Daniel; Ssemata, Andrew S; Pillay, Azure-Dee; Namubiru, Patricia; Seiphetlo, Thabiso B; Odoch, Geoffrey; +19 more... Mugaba, Susan; Seatlholo, Portia; Alieu, Amara; Penchala, Sujan Dilly; Muhumuza, Richard; Alinde, Berenice; Petkov, Stefan; O'Hagan, Kyle; Callebaut, Christian; Seeley, Janet; Weiss, Helen; Khoo, Saye; Chiodi, Francesca; Gray, Clive M; Kaleebu, Pontiano; Webb, Emily L; Martinson, Neil; Fox, Julie; CHAPS; (2023) Dose finding study for on-demand HIV pre-exposure prophylaxis for insertive sex in sub-Saharan Africa: results from the CHAPS open label randomised controlled trial. eBioMedicine, 93. 104648-. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2023.104648

Hodsdon, WS; Luzze, H; Hurst, TJ; Quigley, MA; Kyosiimire, J; Namujju, PB; Johnson, JL; Kaleebu, P; Okwera, A; Elliott, AM; (2001) HIV-1-related pleural tuberculosis: elevated production of IFN-gamma, but failure of immunity to Mycobacterium tuberculosis. AIDS (London, England), 15 (4). pp. 467-475. ISSN 0269-9370 DOI: https://doi.org/10.1097/00002030-200103090-00005 Full text not available from this repository.

Inzaule, Seth C; Jordan, Michael R; Bello, George; Wadonda-Kabondo, Nellie; Mounerou, Salou; Mbulli, Innocent A; Akanmu, Sulaimon A; Vubil, Adolfo; Hunt, Gillian; Kaleebu, Pontiano; +8 more... Mthethwa-Hleza, Simangele; Dzangare, Janet; Njukeng, Patrick; Penazzato, Martina; Rinke de Wit, Tobias F; Eshleman, Susan H; Bertagnolio, Silvia; Infant HIV Drug Resistance Survey Team; (2020) High levels of resistance to nucleoside/nucleotide reverse transcriptase inhibitors in newly diagnosed antiretroviral treatment-naive children in sub-Saharan Africa. AIDS (London, England), 34 (10). pp. 1567-1570. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000002580

Jones, GJ; Watera, C; Patterson, S; Rutebemberwa, A; Kaleebu, P; Whitworth, JA; Gotch, FM; Gilmour, JW; (2001) Comparative loss and maturation of peripheral blood dendritic cell subpopulations in African and non-African HIV-1-infected patients. AIDS (London, England), 15 (13). pp. 1657-1663. ISSN 0269-9370 DOI: https://doi.org/10.1097/00002030-200109070-00008 Full text not available from this repository.

Jordan, Michael R; Penazzato, Martina; Cournil, Amandine; Vubil, Adolfo; Jani, Ilesh; Hunt, Gillian; Carmona, Sergio; Maphalala, Gugu; Mthethwa, Nobuhle; Watera, Christine; +8 more... Kaleebu, Pontiano; Musanhu, Christine Chakanyuka; Mtapuri-Zinyowera, Sekesai; Dzangare, Janet; Peeters, Martine; Yang, Chunfu; Parkin, Neil; Bertagnolio, Silvia; (2017) Human Immunodeficiency Virus (HIV) Drug Resistance in African Infants and Young Children Newly Diagnosed With HIV: A Multicountry Analysis. Clinical infectious diseases, 65 (12). pp. 2018-2025. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix698 Full text not available from this repository.

Kabarambi, Anita; Kansiime, Sheila; Kusemererwa, Sylvia; Kitonsa, Jonathan; Kaleebu, Pontiano; Ruzagira, Eugene; PrEPVacc Study Group; (2022) Predictors of Loss to Follow-Up in an HIV Vaccine Preparedness Study in Masaka, Uganda. International Journal of Environmental Research and Public Health, 19 (11). p. 6377. ISSN 1661-7827 DOI: https://doi.org/10.3390/ijerph19116377

Kaleebu, P; Kamali, A; Seeley, J; Elliott, AM; Katongole-Mbidde, E; (2014) The Medical Research Council (UK)/Uganda Virus Research Institute Uganda Research Unit on AIDS--'25 years of research through partnerships'. Tropical medicine & international health, 20 (2). E1-10. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12415

Kaleebu, P; Ross, A; Morgan, D; Yirrell, D; Oram, J; Rutebemberwa, A; Lyagoba, F; Hamilton, L; Biryahwaho, B; Whitworth, J; (2001) Relationship between HIV-1 Env subtypes A and D and disease progression in a rural Ugandan cohort. AIDS (London, England), 15 (3). pp. 293-299. ISSN 0269-9370 DOI: https://doi.org/10.1097/00002030-200102160-00001 Full text not available from this repository.

Kaleebu, Pontiano; French, Neil; Mahe, Cedric; Yirrell, David; Watera, Christine; Lyagoba, Fred; Nakiyingi, Jessica; Rutebemberwa, Alleluiah; Morgan, Dilys; Weber, Jonathan; +2 more... Gilks, Charles; Whitworth, Jimmy; (2002) Effect of human immunodeficiency virus (HIV) type 1 envelope subtypes A and D on disease progression in a large cohort of HIV-1-positive persons in Uganda. The Journal of infectious diseases, 185 (9). pp. 1244-1250. ISSN 0022-1899 DOI: https://doi.org/10.1086/340130 Full text not available from this repository.

Kaleebu, Pontiano; Kirungi, Wilford; Watera, Christine; Asio, Juliet; Lyagoba, Fred; Lutalo, Tom; Kapaata, Anne A; Nanyonga, Faith; Parry, Chris M; Magambo, Brian; +10 more... Nazziwa, Jamirah; Nannyonjo, Maria; Hughes, Peter; Hladik, Wolfgang; Ruberantwari, Anthony; Namuwenge, Norah; Musinguzi, Joshua; Downing, Robert; Katongole-Mbidde, Edward; HIV Drug Resistance Working group; (2015) Virological Response and Antiretroviral Drug Resistance Emerging during Antiretroviral Therapy at Three Treatment Centers in Uganda. PloS one, 10 (12). e0145536-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0145536

Kaleebu, Pontiano; Kitandwe, Paul Kato; Lutalo, Tom; Kigozi, Aminah; Watera, Christine; Nanteza, Mary Bridget; Hughes, Peter; Musinguzi, Joshua; Opio, Alex; Downing, Robert; +1 more... Mbidde, Edward Katongole; (2018) Evaluation of HIV-1 rapid tests and identification of alternative testing algorithms for use in Uganda. BMC INFECTIOUS DISEASES, 18 (1). 93-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-018-3001-4

Kalungi, Allan; Kinyanda, Eugene; Akena, Dickens Howard; Gelaye, Bizu; Ssembajjwe, Wilber; Mpango, Richard Steven; Ongaria, Terry; Mugisha, Joseph; Makanga, Ronald; Kakande, Ayoub; +9 more... Kimono, Beatrice; Amanyire, Philip; Kirumira, Fred; Lewis, Cathryn M; McIntosh, Andrew M; Kuchenbaecker, Karoline; Nyirenda, Moffat; Kaleebu, Pontiano; Fatumo, Segun; (2024) Prevalence and correlates of common mental disorders among participants of the Uganda Genome Resource: Opportunities for psychiatric genetics research. Molecular psychiatry, 30 (1). pp. 122-130. ISSN 1359-4184 DOI: https://doi.org/10.1038/s41380-024-02665-8

Kalungi, Allan; Kinyanda, Eugene; Akena, Dickens Howard; Kaleebu, Pontiano; Bisangwa, Innocent M; (2021) Less Severe Cases of COVID-19 in Sub-Saharan Africa: Could Co-infection or a Recent History of Plasmodium falciparum Infection Be Protective? Frontiers in immunology, 12. p. 565625. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2021.565625

Kalungi, Allan; Kinyanda, Eugene; Womersley, Jacqueline S; Joloba, Moses L; Ssembajjwe, Wilber; Nsubuga, Rebecca N; Kaleebu, Pontiano; Levin, Jonathan; Kidd, Martin; Seedat, Soraya; +1 more... Hemmings, Sian MJ; (2021) TERT rs2736100 and TERC rs16847897 genotypes moderate the association between internalizing mental disorders and accelerated telomere length attrition among HIV+ children and adolescents in Uganda. BMC medical genomics, 14 (1). 15-. ISSN 1755-8794 DOI: https://doi.org/10.1186/s12920-020-00857-z

Kalungi, Allan; Seedat, Soraya; Hemmings, Sian MJ; van der Merwe, Lize; Joloba, Moses L; Nanteza, Ann; Nakassujja, Noeline; Birabwa, Harriet; Serwanga, Jennifer; Kaleebu, Pontiano; +1 more... Kinyanda, Eugene; (2017) Association between serotonin transporter gene polymorphisms and increased suicidal risk among HIV positive patients in Uganda. BMC genetics, 18 (1). 71-. ISSN 1471-2156 DOI: https://doi.org/10.1186/s12863-017-0538-y

Kalungi, Allan; Womersley, Jacqueline S; Kinyanda, Eugene; Joloba, Moses L; Ssembajjwe, Wilber; Nsubuga, Rebecca N; Levin, Jonathan; Kaleebu, Pontiano; Kidd, Martin; Seedat, Soraya; +1 more... Hemmings, Sian MJ; (2019) Internalizing Mental Disorders and Accelerated Cellular Aging Among Perinatally HIV-Infected Youth in Uganda. Frontiers in Genetics, 10 (JUL). 705-. DOI: https://doi.org/10.3389/fgene.2019.00705

Kamacooko, Onesmus; Kitonsa, Jonathan; Bahemuka, Ubaldo M; Kibengo, Freddie M; Wajja, Anne; Basajja, Vincent; Lumala, Alfred; Kakande, Ayoub; Kafeero, Paddy; Ssemwanga, Edward; +6 more... Asaba, Robert; Mugisha, Joseph; Pierce, Benjamin F; Shattock, Robin J; Kaleebu, Pontiano; Ruzagira, Eugene; (2021) Knowledge, Attitudes, and Practices Regarding COVID-19 among Healthcare Workers in Uganda: A Cross-Sectional Survey. International journal of environmental research and public health, 18 (13). p. 7004. ISSN 1661-7827 DOI: https://doi.org/10.3390/ijerph18137004

Kamali, A; Nsubuga, RN; Ruzagira, E; Bahemuka, U; Asiki, G; Price, MA; Newton, R; Kaleebu, P; Fast, P; (2016) Heterogeneity of HIV incidence: a comparative analysis between fishing communities and in a neighbouring rural general population, Uganda, and implications for HIV control. Sexually transmitted infections, 92 (6). pp. 447-454. ISSN 1368-4973 DOI: https://doi.org/10.1136/sextrans-2015-052179

Kamali, Anatoli; Price, Matt A; Lakhi, Shabir; Karita, Etienne; Inambao, Mubiana; Sanders, Eduard J; Anzala, Omu; Latka, Mary H; Bekker, Linda-Gail; Kaleebu, Pontiano; +16 more... Asiki, Gershim; Ssetaala, Ali; Ruzagira, Eugene; Allen, Susan; Farmer, Paul; Hunter, Eric; Mutua, Gaudensia; Makkan, Heeran; Tichacek, Amanda; Brill, Ilene K; Fast, Pat; Stevens, Gwynn; Chetty, Paramesh; Amornkul, Pauli N; Gilmour, Jill; IAVI Africa HIV Prevention Partnership; (2015) Creating an African HIV clinical research and prevention trials network: HIV prevalence, incidence and transmission. PloS one, 10 (1). e0116100-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0116100

Kamiza, Abram B; Toure, Sounkou M; Vujkovic, Marijana; Machipisa, Tafadzwa; Soremekun, Opeyemi S; Kintu, Christopher; Corpas, Manuel; Pirie, Fraser; Young, Elizabeth; Gill, Dipender; +6 more... Sandhu, Manjinder S; Kaleebu, Pontiano; Nyirenda, Moffat; Motala, Ayesha A; Chikowore, Tinashe; Fatumo, Segun; (2022) Transferability of genetic risk scores in African populations. Nature Medicine, 28 (6). pp. 1163-1166. ISSN 1078-8956 DOI: https://doi.org/10.1038/s41591-022-01835-x

Kang, Min-Su; Nkurunziza, Peter; Muwanika, Richard; Qian, Guoqing; Tang, Lili; Song, Xiao; Xue, Kathy; Nkwata, Allan; Ssempebwa, John; Lutalo, Tom; +8 more... Asiki, Gershim; Serwadda, David; Seeley, Janet; Kaleebu, Pontiano; Nalugoda, Fred; Newton, Robert; William, Jonathan H; Wang, Jia-Sheng; (2015) Longitudinal evaluation of aflatoxin exposure in two cohorts in south-western Uganda. Food additives & contaminants Part A, Chemistry, analysis, control, exposure & risk assessment, 32 (8). pp. 1322-1330. ISSN 1944-0049 DOI: https://doi.org/10.1080/19440049.2015.1048749 Full text not available from this repository.

Kapaata, Anne; Balinda, Sheila N; Hare, Jonathan; Leonova, Olga; Kikaire, Bernard; Egesa, Moses; Lubyayi, Lawrence; Macharia, Gladys N; Kamali, Anatoli; Gilmour, Jill; +3 more... Bagaya, Bernard; Salazar-Gonzalez, Jesus F; Kaleebu, Pontiano; (2022) Infection with HIV-1 subtype D among acutely infected Ugandans is associated with higher median concentration of cytokines compared to subtype A. IJID Regions, 3. pp. 89-95. ISSN 2772-7076 DOI: https://doi.org/10.1016/j.ijregi.2022.03.007

Kapaata, Anne; Balinda, Sheila N; Xu, Rui; Salazar, Maria G; Herard, Kimberly; Brooks, Kelsie; Laban, Kato; Hare, Jonathan; Dilernia, Dario; Kamali, Anatoli; +8 more... Ruzagira, Eugene; Mukasa, Freddie; Gilmour, Jill; Salazar-Gonzalez, Jesus F; Yue, Ling; Cotten, Matthew; Hunter, Eric; Kaleebu, Pontiano; (2021) HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity. Viruses, 13 (2). p. 171. ISSN 1999-4915 DOI: https://doi.org/10.3390/v13020171

Karita, Etienne; Ketter, Nzeera; Price, Matt A; Kayitenkore, Kayitesi; Kaleebu, Pontiano; Nanvubya, Annet; Anzala, Omu; Jaoko, Walter; Mutua, Gaudensia; Ruzagira, Eugene; +23 more... Mulenga, Joseph; Sanders, Eduard J; Mwangome, Mary; Allen, Susan; Bwanika, Agnes; Bahemuka, Ubaldo; Awuondo, Ken; Omosa, Gloria; Farah, Bashir; Amornkul, Pauli; Birungi, Josephine; Yates, Sarah; Stoll-Johnson, Lisa; Gilmour, Jill; Stevens, Gwynn; Shutes, Erin; Manigart, Olivier; Hughes, Peter; Dally, Len; Scott, Janet; Stevens, Wendy; Fast, Pat; Kamali, Anatoli; (2009) CLSI-derived hematology and biochemistry reference intervals for healthy adults in eastern and southern Africa. PloS one, 4 (2). e4401-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0004401

Kasamba, Ivan; Mugisha, Joseph; Abaasa, Andrew; Makanga, Ronald; Ruzagira, Eugene; Kaleebu, Pontiano; Seeley, Janet; Newton, Robert; Kyamulibwa General Population Cohort team of Medical Research Co; (2023) Thirty years of change in HIV incidence among adults in the Kyamulibwa General Population Cohort in rural southwest Uganda, 1989-2021. International journal of infectious diseases, 129. pp. 125-134. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2023.01.029

Kayondo, Hassan W; Ssekagiri, Alfred; Nabakooza, Grace; Bbosa, Nicholas; Ssemwanga, Deogratius; Kaleebu, Pontiano; Mwalili, Samuel; Mango, John M; Leigh Brown, Andrew J; Saenz, Roberto A; +2 more... Galiwango, Ronald; Kitayimbwa, John M; (2021) Employing phylogenetic tree shape statistics to resolve the underlying host population structure. BMC bioinformatics, 22 (1). 546-. ISSN 1471-2105 DOI: https://doi.org/10.1186/s12859-021-04465-1

Kayondo, Jonathan K; Ndembi, Nicaise; Parry, Chris M; Cane, Patricia A; Hué, Stephane; Goodall, Ruth; Dunn, David T; Kaleebu, Pontiano; Pillay, Deenan; Mbisa, Jean L; +1 more... DART Virology Committee; (2015) Intrapatient Evolutionary Dynamics of Human Immunodeficiency Virus Type 1 in Individuals Undergoing Alternative Treatment Strategies with Reverse Transcriptase Inhibitors. AIDS research and human retroviruses, 31 (7). pp. 749-756. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2015.0035

Kazooba, Patrick; Kasamba, Ivan; Mayanja, Billy Nsubuga; Lutaakome, Joseph; Namakoola, Ivan; Salome, Tino; Kaleebu, Pontiano; Munderi, Paula; (2017) Cardiometabolic risk among HIV-POSITIVE Ugandan adults: prevalence, predictors and effect of long-term antiretroviral therapy. The Pan African medical journal, 27. 40-. ISSN 1937-8688 DOI: https://doi.org/10.11604/pamj.2017.27.40.9840

Kazooba, Patrick; Mayanja, Billy Nsubuga; Levin, Jonathan; Masiira, Ben; Kaleebu, Pontiano; (2018) Virological failure on first-line antiretroviral therapy; associated factors and a pragmatic approach for switching to second line therapy-evidence from a prospective cohort study in rural South-Western Uganda, 2004-2011. The Pan African medical journal, 29. 191-. ISSN 1937-8688 DOI: https://doi.org/10.11604/pamj.2018.29.191.11940

Kebba, Anthony; Imami, Nesrina; Bugembe-Lule, Daniel; Senkaali, David; Kaleebu, Pontiano; Grosskurth, Heiner; Gotch, Frances; (2007) Recent HIV-1 infection in a high-risk Ugandan cohort: implications for Phase IIB test-of-concept HIV vaccine trials. Pharmacogenomics, 8 (4). pp. 409-414. ISSN 1462-2416 DOI: https://doi.org/10.2217/14622416.8.4.409 Full text not available from this repository.

Kebba, Anthony; Kaleebu, Pontiano; Rowland, Samantha; Ingram, Rebecca; Whitworth, Jimmy; Imami, Nesrina; Gotch, Frances; (2004) Distinct patterns of peripheral HIV-1-specific interferon- gamma responses in exposed HIV-1-seronegative individuals. The Journal of infectious diseases, 189 (9). pp. 1705-1713. ISSN 0022-1899 DOI: https://doi.org/10.1086/383227 Full text not available from this repository.

Kebba, Anthony; Kaleebu, Pontiano; Serwanga, Jennifer; Rowland, Samantha; Yirrell, David; Downing, Robert; Gilmour, Jill; Imami, Nesrina; Gotch, Frances; Whitworth, Jimmy; (2004) HIV type 1 antigen-responsive CD4+ T-lymphocytes in exposed yet HIV Type 1 seronegative Ugandans. AIDS research and human retroviruses, 20 (1). pp. 67-75. ISSN 0889-2229 DOI: https://doi.org/10.1089/088922204322749512 Full text not available from this repository.

Kim, Jiho; Zhang, Wendy; Nyonyitono, Maureen; Lourenco, Lillian; Nanfuka, Mastula; Okoboi, Stephen; Birungi, Josephine; Lester, Richard T; Kaleebu, Pontiano; Munderi, Paula; +1 more... Moore, David M; (2015) Feasibility and acceptability of mobile phone short message service as a support for patients receiving antiretroviral therapy in rural Uganda: a cross-sectional study. Journal of the International AIDS Society, 18 (1). 20311-. ISSN 1758-2652 DOI: https://doi.org/10.7448/IAS.18.1.20311

Kimbugwe, Geofrey; Vatrinet, Renaud; Mwanga, Juliet A; Kakuru, Ronald; Mpeirwe, Doreen; Logoose, Suzan; Opio, Kimton; Kambale, Mateus; Seeley, Janet; Grais, Rebecca F; +3 more... Marquer, Caroline; Kaleebu, Pontiano; Ssali, Agnes; (2024) Perceptions, attitudes, and willingness of healthcare and frontline workers to participate in an Ebola vaccine trial in Uganda. Vaccine, 42 (12). pp. 3002-3008. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2024.03.053

King, Rachel; Min, Jeong; Birungi, Josephine; Nyonyintono, Maureen; Muldoon, Katherine A; Khanakwa, Sarah; Kaleebu, Pontiano; Moore, David M; (2015) Effect of Couples Counselling on Reported HIV Risk Behaviour among HIV Serodiscordant Couples by ART Use, HIV Status and Gender in Rural Uganda. PloS one, 10 (9). e0136531-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0136531

Kinyanda, Eugene; Kyohangirwe, Leticia; Mpango, Richard S; Tusiime, Christine; Ssebunnya, Joshua; Katumba, Kenneth; Tenywa, Patrick; Mugisha, James; Taasi, Geoffrey; Sentongo, Hafsa; +12 more... Akena, Dickens; Laurence, Yoko; Muhwezi, Wilson; Weiss, Helen A; Neuman, Melissa; Greco, Giulia; Knizek, Birthe; Levin, Jonathan; Kaleebu, Pontiano; Araya, Ricardo; Ssembajjwe, Wilber; Patel, Vikram; (2021) Effectiveness and cost-effectiveness of integrating the management of depression into routine HIV Care in Uganda (the HIV + D trial): A protocol for a cluster-randomised trial. International journal of mental health systems, 15 (1). 45-. ISSN 1752-4458 DOI: https://doi.org/10.1186/s13033-021-00469-9

Kitandwe, Paul K; Rogers, Paul; Hu, Kai; Nayebare, Owen; Blakney, Anna K; McKay, Paul F; Kaleebu, Pontiano; Shattock, Robin J; (2024) A Lipid Nanoparticle-Formulated Self-Amplifying RNA Rift Valley Fever Vaccine Induces a Robust Humoral Immune Response in Mice. Vaccines, 12 (10). e1088. ISSN 2076-393X DOI: https://doi.org/10.3390/vaccines12101088

Kitandwe, Paul Kato; McKay, Paul F; Kaleebu, Pontiano; Shattock, Robin J; (2022) An Overview of Rift Valley Fever Vaccine Development Strategies. Vaccines, 10 (11). p. 1794. ISSN 2076-393X DOI: https://doi.org/10.3390/vaccines10111794

Kitonsa, Jonathan; Ggayi, Abu-Baker; Anywaine, Zacchaeus; Kisaakye, Eva; Nsangi, Laura; Basajja, Vincent; Nyantaro, Mary; Watson-Jones, Deborah; Shukarev, Georgi; Ilsbroux, Ine; +2 more... Robinson, Cynthia; Kaleebu, Pontiano; (2020) Implementation of accelerated research: strategies for implementation as applied in a phase 1 Ad26.ZEBOV, MVA-BN-Filo two-dose Ebola vaccine clinical trial in Uganda. GLOBAL HEALTH ACTION, 13 (1). 1829829-. ISSN 1654-9716 DOI: https://doi.org/10.1080/16549716.2020.1829829

Kitonsa, Jonathan; Kamacooko, Onesmus; Bahemuka, Ubaldo Mushabe; Kibengo, Freddie; Kakande, Ayoub; Wajja, Anne; Basajja, Vincent; Lumala, Alfred; Ssemwanga, Edward; Asaba, Robert; +5 more... Mugisha, Joseph; Pierce, Benjamin F; Shattock, Robin; Kaleebu, Pontiano; Ruzagira, Eugene; (2021) Willingness to participate in COVID-19 vaccine trials; a survey among a population of healthcare workers in Uganda. PloS one, 16 (5). e0251992-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0251992 Item availability may be restricted.

Kitonsa, Jonathan; Kamacooko, Onesmus; Ruzagira, Eugene; Nambaziira, Florence; Abaasa, Andrew; Serwanga, Jennifer; Gombe, Ben; Lunkuse, Jane; Naluyinda, Hadijah; Tukamwesiga, Naboth; +8 more... Namata, Tamara; Kigozi, Antony; Kafeero, Paddy; Basajja, Vincent; Joseph, Sarah; Pierce, Benjamin F; Shattock, Robin; Kaleebu, Pontiano; (2023) A phase I COVID-19 vaccine trial among SARS-CoV-2 seronegative and seropositive individuals in Uganda utilizing a self-amplifying RNA vaccine platform: Screening and enrollment experiences. Human vaccines & immunotherapeutics, 19 (2). 2240690-. ISSN 2164-5515 DOI: https://doi.org/10.1080/21645515.2023.2240690

Kitonsa, Jonathan; Kiwanuka, Julius; Anywaine, Zacchaeus; Kansiime, Sheila; Katumba, Kenneth; Aeron, Namirembe; Beardsley, Justin; Kibengo, Freddie; Gray, Alastair; Kaleebu, Pontiano; +1 more... Day, Jeremy; (2021) Quality of life and associated factors among HIV positive patients after completion of treatment for Cryptococcal meningitis. PLoS neglected tropical diseases, 15 (3). e0008983-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0008983

Kitonsa, Jonathan; Mayanja, Yunia; Aling, Emmanuel; Kiwanuka, Julius; Namutundu, Juliana; Anywaine, Zacchaeus; Ggayi, Abu-Baker; Kibengo, Freddie; Kiwanuka, Noah; Kaleebu, Pontiano; (2019) Factors affecting mortality among HIV positive patients two years after completing recommended therapy for Cryptococcal meningitis in Uganda. PLOS ONE, 14 (1). e0210287-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0210287

Kitonsa, Jonathan; Nsubuga, Rebecca; Mayanja, Yunia; Kiwanuka, Julius; Nikweri, Yofesi; Onyango, Martin; Anywaine, Zacchaeus; Ggayi, Abu-Baker; Kibengo, Freddie Mukasa; Kaleebu, Pontiano; +1 more... Day, Jeremy; (2020) Determinants of two-year mortality among HIV positive patients with Cryptococcal meningitis initiating standard antifungal treatment with or without adjunctive dexamethasone in Uganda. PLOS NEGLECTED TROPICAL DISEASES, 14 (11). e0008823-. ISSN 1935-2735 DOI: https://doi.org/10.1371/journal.pntd.0008823

Kityo, Cissy; Gibb, Diana M; Gilks, Charles F; Goodall, Ruth L; Mambule, Ivan; Kaleebu, Pontiano; Pillay, Deenan; Kasirye, Ronnie; Mugyenyi, Peter; Walker, A Sarah; +2 more... Dunn, David T; DART Trial Team; (2014) High level of viral suppression and low switch rate to second-line antiretroviral therapy among HIV-infected adult patients followed over five years: retrospective analysis of the DART trial. PloS one, 9 (3). e90772-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0090772

Kiwanuka, Noah; Ssetaala, Ali; Nalutaaya, Annet; Mpendo, Juliet; Wambuzi, Matthias; Nanvubya, Annet; Sigirenda, Simon; Kitandwe, Paul Kato; Nielsen, Leslie Elizabeth; Balyegisawa, Apolo; +3 more... Kaleebu, Pontiano; Nalusiba, Josephine; Sewankambo, Nelson Kaulukusi; (2014) High incidence of HIV-1 infection in a general population of fishing communities around Lake Victoria, Uganda. PLOS ONE, 9 (5). e94932-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0094932

Kiwanuka, Noah; Ssetaala, Ali; Ssekandi, Ismail; Nalutaaya, Annet; Kitandwe, Paul Kato; Ssempiira, Julius; Bagaya, Bernard Ssentalo; Balyegisawa, Apolo; Kaleebu, Pontiano; Hahn, Judith; +2 more... Lindan, Christina; Sewankambo, Nelson Kaulukusi; (2017) Population attributable fraction of incident HIV infections associated with alcohol consumption in fishing communities around Lake Victoria, Uganda. PLOS ONE, 12 (2). e0171200-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0171200

Kiwuwa-Muyingo, Sylvia; Nazziwa, Jamirah; Ssemwanga, Deogratius; Ilmonen, Pauliina; Njai, Harr; Ndembi, Nicaise; Parry, Chris; Kitandwe, Paul Kato; Gershim, Asiki; Mpendo, Juliet; +6 more... Neilsen, Leslie; Seeley, Janet; Seppälä, Heikki; Lyagoba, Fred; Kamali, Anatoli; Kaleebu, Pontiano; (2017) HIV-1 transmission networks in high risk fishing communities on the shores of Lake Victoria in Uganda: A phylogenetic and epidemiological approach. PloS one, 12 (10). e0185818-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0185818

Koopman, Jan Pieter; Egesa, Moses; Wajja, Anne; Adriko, Moses; Nassuuna, Jacent; Nkurunungi, Gyaviira; Driciru, Emmanuella; van Willigen, Gijsbert; Cose, Stephen; Yazdanbakhsh, Maria; +5 more... Kaleebu, Pontiano; Kabatereine, Narcis; Tukahebwa, Edridah; Roestenberg, Meta; Elliott, Alison M; (2019) Risk assessment for the implementation of controlled human Schistosoma mansoni infection trials in Uganda. AAS Open Research, 2. p. 17. DOI: https://doi.org/10.12688/aasopenres.12972.2

Koopman, Jan Pieter; Egesa, Moses; Wajja, Anne; Adriko, Moses; Nassuuna, Jacent; Nkurunungi, Gyaviira; Driciru, Emmanuella; van Willigen, Gijsbert; Cose, Stephen; Yazdanbakhsh, Maria; +5 more... Kaleebu, Pontiano; Kabatereine, Narcis; Tukahebwa, Edridah; Roestenberg, Meta; Elliott, Alison M; (2019) Risk assessment for the implementation of controlled human Schistosoma mansoni infection trials in Uganda. AAS open research, 2. 17-. DOI: https://doi.org/10.12688/aasopenres.12972.2

Kusemererwa, Sylvia; Kansiime, Sheila; Mutonyi, Gertrude; Namirembe, Aeron; Katana, Safina; Kitonsa, Jonathan; Kakande, Ayoub; Okello, Joseph Mugisha; Kaleebu, Pontiano; Ruzagira, Eugene; (2021) Predictors of oral pre-exposure prophylaxis (PrEP) uptake among individuals in a HIV vaccine preparedness cohort in Masaka, Uganda. Medicine, 100 (44). e27719-. ISSN 0304-5412 DOI: https://doi.org/10.1097/MD.0000000000027719

Kusemererwa, Sylvia; Kansiime, Sheila; Nakamanya, Sarah; Mbabazi, Elizabeth; Fox, Julie; McCormack, Sheena; Kaleebu, Pontiano; Ruzagira, Eugene; (2024) Contraceptive use, prevalence and incidence of pregnancy and associated factors among women participating in a vaccine preparedness cohort study in Masaka, Uganda, a retrospective secondary analysis. Reproductive health, 21. pp. 1-10. ISSN 1742-4755 DOI: https://doi.org/10.1186/s12978-024-01942-7

Kyosiimire-Lugemwa, Jacqueline; Anywaine, Zacchaeus; Abaasa, Andrew; Levin, Jonathan; Gombe, Ben; Musinguzi, Kenneth; Kaleebu, Pontiano; Grosskurth, Heiner; Munderi, Paula; Pala, Pietro; (2019) Effect of Stopping Cotrimoxazole Preventive Therapy on Microbial Translocation and Inflammatory Markers Among Human Immunodeficiency Virus-Infected Ugandan Adults on Antiretroviral Therapy: The COSTOP Trial Immunology Substudy. The Journal of infectious diseases, 222 (3). pp. 381-390. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiz494

Laher, Fatima; Richardson, Simone I; Smith, Philip; Sullivan, Patrick S; Abrahams, Andrea G; Asowata, Osaretin E; Bitangumutwenzi, Patrick; Dabee, Smritee; Dollah, Annabell; Fernandez, Natalia; +17 more... Langat, Robert K; Bose, Devi Leena; Likhitwonnawut, Udom; Mullick, Ranajoy; Resop, Rachel S; Sutar, Jyoti; Thompson-Hall, Ashaki Nzingha; Traeger, Michael W; Tuyishime, Marina; Wambui, Jacque; Bekker, Linda-Gail; Kaleebu, Pontiano; McCormack, Sheena; O'Connor, David H; Warren, Mitchell; Torri, Tamara; Thyagarajan, Bargavi; (2021) HIV Prevention in a Time of COVID-19: A Report from the HIVR4P // Virtual Conference 2021. AIDS Research and Human Retroviruses, 38 (5). pp. 350-358. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2021.0138

Lang, Trudie; Reeder, John; Moorthy, Vasee; Trindade Lima, Nísia; Gray, Glenda; Kaleebu, Pontiano; Ihekweazu, Chikwe; Nsanzimana, Sabin; Kang, Gagandeep; Makanga, Michael; +1 more... Swaminathan, Soumya; (2022) Creating equity in health research to drive more and better evidence. Wellcome open research, 7. 15-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.17287.1

Lubyayi, Lawrence; Mawa, Patrice A; Nabakooza, Grace; Nakibuule, Marjorie; Tushabe, John Vianney; Serubanja, Joel; Aibo, Dorothy; Akurut, Hellen; Tumusiime, Josephine; Hasso-Agopsowicz, Mateusz; +7 more... Kaleebu, Pontiano; Levin, Jonathan; Dockrell, Hazel M; Smith, Steven; Webb, Emily L; Elliott, Alison M; Cose, Stephen; (2020) Maternal Latent Mycobacterium tuberculosis Does Not Affect the Infant Immune Response Following BCG at Birth: An Observational Longitudinal Study in Uganda. FRONTIERS IN IMMUNOLOGY, 11. 929-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2020.00929

Lutalo, Tom; Nalumansi, Aminah; Olara, Denis; Kayiwa, John; Ogwang, Bernard; Odwilo, Emmanuel; Watera, Christine; Balinandi, Stephen; Kiconco, Jocelyn; Nakaseegu, Joweria; +10 more... Serwanga, Jennifer; Kikaire, Bernard; Ssemwanga, Deogratius; Abiko, Brendah; Nsereko, Christopher; Cotten, Matthew; Buule, Joshua; Lutwama, Julius; Downing, Robert; Kaleebu, Pontiano; (2021) Evaluation of the performance of 25 SARS-CoV-2 serological rapid diagnostic tests using a reference panel of plasma specimens at the Uganda Virus Research Institute. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 112. pp. 281-287. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2021.09.020

Lyagoba, Fred; Dunn, David T; Pillay, Deenan; Kityo, Cissy; Robertson, Val; Tugume, Stephano; Hakim, James; Munderi, Paula; Chirara, Mike; Ndembi, Nicaise; +6 more... Goodall, Ruth L; Yirrell, David L; Burke, Andy; Gilks, Charles F; Kaleebu, Pontiano; DART Virology and Trial Team; (2010) Evolution of drug resistance during 48 weeks of zidovudine/lamivudine/tenofovir in the absence of real-time viral load monitoring. Journal of acquired immune deficiency syndromes (1999), 55 (2). pp. 277-283. ISSN 1525-4135 DOI: https://doi.org/10.1097/QAI.0b013e3181ea0df8 Full text not available from this repository.

Mahé, Cédric; Kaleebu, Pontiano; Ojwiya, Amato; Whitworth, James AG; (2002) Human immunodeficiency virus type 1 Western blot: revised diagnostic criteria with fewer indeterminate results for epidemiological studies in Africa. International journal of epidemiology, 31 (5). pp. 985-990. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/31.5.985 Full text not available from this repository.

Martin, Genevieve E; Pace, Matthew; Thornhill, John P; Phetsouphanh, Chansavath; Meyerowitz, Jodi; Gossez, Morgane; Brown, Helen; Olejniczak, Natalia; Lwanga, Julianne; Ramjee, Gita; +8 more... Kaleebu, Pontiano; Porter, Kholoud; Willberg, Christian B; Klenerman, Paul; Nwokolo, Nneka; Fox, Julie; Fidler, Sarah; Frater, John; (2018) CD32-Expressing CD4 T Cells Are Phenotypically Diverse and Can Contain Proviral HIV DNA. Frontiers in immunology, 9 (MAY). 928-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2018.00928

Masiira, Ben; Baisley, Kathy; Mayanja, Billy N; Kazooba, Patrick; Maher, Dermot; Kaleebu, Pontiano; (2014) Mortality and its predictors among antiretroviral therapy naïve HIV-infected individuals with CD4 cell count ≥350 cells/mm(3) compared to the general population: data from a population-based prospective HIV cohort in Uganda. Global health action, 7 (1). 21843-. ISSN 1654-9716 DOI: https://doi.org/10.3402/gha.v7.21843

Maust, Brandon S; Petkov, Stefan; Herrera, Carolina; Feng, Colin; Brown, Bryan P; Lebina, Limakatso; Opoka, Daniel; Ssemata, Andrew; Pillay, Natasha; Serwanga, Jennifer; +12 more... Seatlholo, Portia; Namubiru, Patricia; Odoch, Geoffrey; Mugaba, Susan; Seiphetlo, Thabiso; Gray, Clive M; Kaleebu, Pontiano; Webb, Emily L; Martinson, Neil; Chiodi, Francesca; Fox, Julie; Jaspan, Heather B; (2023) Bacterial microbiome and host inflammatory gene expression in foreskin tissue. Heliyon, 9. e22145. ISSN 2405-8440 DOI: https://doi.org/10.1016/j.heliyon.2023.e22145

Mawa, Patrice A; Hasso-Agopsowicz, Mateusz; Lubyayi, Lawrence; Nabakooza, Grace; Nakibuule, Marjorie; Blitz, Rose; Dun, Li; Govind, Abha; Kaleebu, Pontiano; Webb, Emily L; +4 more... Elliott, Alison M; Dockrell, Hazel M; Cose, Stephen; Smith, Steven G; (2021) Immune Responses Following BCG Immunization of Infants in Uganda and United Kingdom Are Similar for Purified Protein Derivative but Differ for Secretory Proteins of Mycobacterium tuberculosis. Frontiers in immunology, 12. 637114-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2021.637114

Mayanja, BN; Kabunga, E; Masiira, B; Lubega, R; Kaleebu, P; Seeley, J; (2013) Personal barriers to antiretroviral therapy adherence: case studies from a rural Uganda prospective clinical cohort. African health sciences, 13 (2). pp. 311-319. ISSN 1680-6905 DOI: https://doi.org/10.4314/ahs.v13i2.16 Full text not available from this repository.

Mayanja, Billy N; Baisley, Kathy; Nalweyiso, Norah; Kibengo, Freddie M; Mugisha, Joseph O; Van der Paal, Lieve; Maher, Dermot; Kaleebu, Pontiano; (2011) Using verbal autopsy to assess the prevalence of HIV infection among deaths in the ART period in rural Uganda: a prospective cohort study, 2006-2008. POPULATION HEALTH METRICS, 9 (1). 36-. ISSN 1478-7954 DOI: https://doi.org/10.1186/1478-7954-9-36

Mayanja, Billy Nsubuga; Kasamba, Ivan; Levin, Jonathan; Namakoola, Ivan; Kazooba, Patrick; Were, Jackson; Kaleebu, Pontiano; Munderi, Paula; CoLTART study team; (2017) COHORT PROFILE: The Complications of Long-Term Antiretroviral Therapy study in Uganda (CoLTART), a prospective clinical cohort. AIDS research and therapy, 14 (1). 26-. ISSN 1742-6405 DOI: https://doi.org/10.1186/s12981-017-0154-y

Mayanja, Yunia; Kamacooko, Onesmus; Bagiire, Daniel; Namale, Gertrude; Kaleebu, Pontiano; Seeley, Janet; (2017) 'Test and Treat' Among Women at High Risk for HIV-infection in Kampala, Uganda: Antiretroviral Therapy Initiation and Associated Factors. AIDS and behavior, 22 (3). pp. 1053-1061. ISSN 1090-7165 DOI: https://doi.org/10.1007/s10461-017-1973-5

Mayanja, Yunia; Kamacooko, Onesmus; Lunkuse, Jane Frances; Muturi-Kioi, Vincent; Buzibye, Allan; Omali, Denis; Chinyenze, Kundai; Kuteesa, Monica; Kaleebu, Pontiano; Price, Matt A; (2022) Oral pre-exposure prophylaxis preference, uptake, adherence and continuation among adolescent girls and young women in Kampala, Uganda: a prospective cohort study. Journal of the International AIDS Society, 25 (5). e25909-. ISSN 1758-2652 DOI: https://doi.org/10.1002/jia2.25909

Morgan, D; Kaleebu, P; Whitworth, J; Yirrell, D; Rutebemberwa, A; Shier, R; Sebabi, B; Gilmour, J; Eotu, H; Omoding, N; +1 more... Gotch, F; (2001) The stability between two HIV-1 RNA measurements one year apart and the relationship with HIV subtype in rural Uganda. International journal of STD & AIDS, 12 (2). pp. 116-121. ISSN 0956-4624 DOI: https://doi.org/10.1258/0956462011916758 Full text not available from this repository.

Mugenyi, Levicatus; Hansen, Christian H; Mayaud, Philippe; Seeley, Janet; Newton, Robert; Nanfuka, Mastula; Abaasa, Andrew; Mugisha, Kenneth; Etukoit, Michael; Kaleebu, Pontiano; +1 more... Ruzagira, Eugene; (2023) Effect of the "universal test and treat" policy on the characteristics of persons registering for HIV care and initiating antiretroviral therapy in Uganda. Frontiers in Public Health, 11. 1187274-. ISSN 2296-2565 DOI: https://doi.org/10.3389/fpubh.2023.1187274

Nakanjako, Damalie; Ssinabulya, Isaac; Nabatanzi, Rose; Bayigga, Lois; Kiragga, Agnes; Joloba, Moses; Kaleebu, Pontiano; Kambugu, Andrew D; Kamya, Moses R; Sekaly, Rafick; +2 more... Elliott, Alison; Mayanja-Kizza, Harriet; (2015) Atorvastatin reduces T-cell activation and exhaustion among HIV-infected cART-treated suboptimal immune responders in Uganda: a randomised crossover placebo-controlled trial. Tropical medicine & international health, 20 (3). pp. 380-390. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12442

Nakiboneka, Ritah; Mugaba, Susan; Auma, Betty O; Kintu, Christopher; Lindan, Christina; Nanteza, Mary Bridget; Kaleebu, Pontiano; Serwanga, Jennifer; (2019) Interferon gamma (IFN-γ) negative CD4+ and CD8+ T-cells can produce immune mediators in response to viral antigens. Vaccine, 37 (1). pp. 113-122. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.11.024

Nakimuli, Annettee; Chazara, Olympe; Byamugisha, Josaphat; Elliott, Alison M; Kaleebu, Pontiano; Mirembe, Florence; Moffett, Ashley; (2013) Pregnancy, parturition and preeclampsia in women of African ancestry. American journal of obstetrics and gynecology, 210 (6). 510-520.e1. ISSN 0002-9378 DOI: https://doi.org/10.1016/j.ajog.2013.10.879

Nakimuli, Annettee; Chazara, Olympe; Farrell, Lydia; Hiby, Susan E; Tukwasibwe, Stephen; Knee, Olatejumoye; Jayaraman, Jyothi; Traherne, James A; Elliott, Alison M; Kaleebu, Pontiano; +2 more... Mirembe, Florence; Moffett, Ashley; (2013) Killer cell immunoglobulin-like receptor (KIR) genes and their HLA-C ligands in a Ugandan population. Immunogenetics, 65 (11). pp. 765-775. ISSN 0093-7711 DOI: https://doi.org/10.1007/s00251-013-0724-7

Nakimuli, Annettee; Chazara, Olympe; Hiby, Susan E; Farrell, Lydia; Tukwasibwe, Stephen; Jayaraman, Jyothi; Traherne, James A; Trowsdale, John; Colucci, Francesco; Lougee, Emma; +9 more... Vaughan, Robert W; Elliott, Alison M; Byamugisha, Josaphat; Kaleebu, Pontiano; Mirembe, Florence; Nemat-Gorgani, Neda; Parham, Peter; Norman, Paul J; Moffett, Ashley; (2015) A KIR B centromeric region present in Africans but not Europeans protects pregnant women from pre-eclampsia. Proceedings of the National Academy of Sciences of the United States of America, 112 (3). pp. 845-850. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1413453112 Full text not available from this repository.

Nakimuli, Annettee; Elliott, Alison M; Kaleebu, Pontiano; Moffett, Ashley; Mirembe, Florence; (2013) Hypertension persisting after pre-eclampsia: a prospective cohort study at Mulago Hospital, Uganda. PloS one, 8 (12). e85273-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0085273

Nalumansi, Aminah; Lutalo, Tom; Kayiwa, John; Watera, Christine; Balinandi, Stephen; Kiconco, Jocelyn; Nakaseegu, Joweria; Olara, Denis; Odwilo, Emmanuel; Serwanga, Jennifer; +12 more... Kikaire, Bernard; Ssemwanga, Deogratius; Nabadda, Susan; Ssewanyana, Isaac; Atwine, Diane; Mwebesa, Henry; Bosa, Henry Kyobe; Nsereko, Christopher; Cotten, Matthew; Downing, Robert; Lutwama, Julius; Kaleebu, Pontiano; (2020) Field evaluation of the performance of a SARS-CoV-2 antigen rapid diagnostic test in Uganda using nasopharyngeal samples. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 104. pp. 282-286. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2020.10.073

Namale, Gertrude; Kamacooko, Onesmus; Bagiire, Daniel; Mayanja, Yunia; Abaasa, Andrew; Kilembe, William; Price, Matt; Ssemwanga, Deogratius; Lunkuse, Sandra; Nanyonjo, Maria; +5 more... Ssenyonga, William; Mayaud, Philippe; Newton, Rob; Kaleebu, Pontiano; Seeley, Janet; (2019) Sustained virological response and drug resistance among female sex workers living with HIV on antiretroviral therapy in Kampala, Uganda: a cross-sectional study. Sexually Transmitted Infections, 95 (6). pp. 405-411. ISSN 1368-4973 DOI: https://doi.org/10.1136/sextrans-2018-053854

Nanfuka, Mastula; Forrest, Jamie I; Zhang, Wendy; Okoboi, Stephen; Birungi, Josephine; Kaleebu, Pontiano; Zhu, Julia; Tibenganas, Samuel; Moore, David M; (2021) Durability of non-nucleotide reverse transcriptase inhibitor-based first-line ART regimens after 7 years of treatment in rural Uganda: A prospective cohort study. Medicine, 100 (19). e25763-. ISSN 0304-5412 DOI: https://doi.org/10.1097/MD.0000000000025763

Nannyonjo, Maria; Omooja, Jonah; Bugembe, Daniel Lule; Bbosa, Nicholas; Lunkuse, Sandra; Nabirye, Stella Esther; Nassolo, Faridah; Namagembe, Hamidah; Abaasa, Andrew; Kazibwe, Anne; +2 more... Kaleebu, Pontiano; Ssemwanga, Deogratius; (2024) Next-Generation Sequencing Reveals a High Frequency of HIV-1 Minority Variants and an Expanded Drug Resistance Profile among Individuals on First-Line ART. Viruses, 16 (9). p. 1454. ISSN 1999-4915 DOI: https://doi.org/10.3390/v16091454

Nash, S; Dietrich, J; Ssemata, AS; Herrera, C; O'Hagan, K; Else, L; Chiodi, F; Kelly, C; Shattock, R; Chirenje, M; +11 more... Lebina, L; Khoo, S; Bekker, L-G; Weiss, HA; Gray, C; Stranix-Chibanda, L; Kaleebu, P; Seeley, J; Martinson, N; Fox, J; CHAPS team; (2020) Combined HIV Adolescent Prevention Study (CHAPS): comparison of HIV pre-exposure prophylaxis regimens for adolescents in sub-Saharan Africa-study protocol for a mixed-methods study including a randomised controlled trial. Trials, 21 (1). 900-. DOI: https://doi.org/10.1186/s13063-020-04760-x

Nassuuna, Jacent; Zirimenya, Ludoviko; Nkurunungi, Gyaviira; Natukunda, Agnes; Zziwa, Christopher; Ninsiima, Caroline; Apule, Barbara; Onen, Caroline; Amongi, Susan; Serubanja, Joel; +13 more... Tumwesige, Pius; Nsubuga, Denis; Amongin, Rebecca; van Dam, Govert J; Corstjens, Paul LAM; Kayiwa, John; Kabagenyi, Joyce; Cose, Stephen; Wajja, Anne; Kaleebu, Pontiano; Webb, Emily L; Elliott, Alison M; POPVAC trial team; (2024) The effect of BCG revaccination on the response to unrelated vaccines in urban Ugandan adolescents (POPVAC C): an open-label, randomised controlled trial. The Lancet Global health, 12 (11). e1849-e1859. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(24)00282-1 Item availability may be restricted.

Natukunda, Agnes; Nkurunungi, Gyaviira; Zirimenya, Ludoviko; Nassuuna, Jacent; Zziwa, Christopher; Ninsiima, Caroline; Tumusiime, Josephine; Nyanzi, Ruth; Namutebi, Milly; Kiwudhu, Fred; +12 more... van Dam, Govert J; Corstjens, Paul LAM; Kizindo, Robert; Nkangi, Ronald; Kabagenyi, Joyce; Nassanga, Beatrice; Cose, Stephen; Wajja, Anne; Kaleebu, Pontiano; Elliott, Alison M; Webb, Emily L; POPVAC trial team; (2024) Schistosome and malaria exposure and urban-rural differences in vaccine responses in Uganda: a causal mediation analysis using data from three linked randomised controlled trials. The Lancet Global Health, 12 (11). e1860-e1870. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(24)00340-1

Nazziwa, Jamirah; Njai, Harr Freeya; Ndembi, Nicaise; Birungi, Josephine; Lyagoba, Fred; Gershim, Asiki; Nakiyingi-Miiro, Jessica; Nielsen, Leslie; Mpendo, Juliet; Nanvubya, Annet; +6 more... Debont, Jan; Grosskurth, Heiner; Kamali, Anatoli; Seeley, Janet; Kaleebu, Pontiano; Chivtum Study Team; (2013) Short communication: HIV type 1 transmitted drug resistance and evidence of transmission clusters among recently infected antiretroviral-naive individuals from Ugandan fishing communities of Lake Victoria. AIDS research and human retroviruses, 29 (5). pp. 788-795. ISSN 0889-2229 DOI: https://doi.org/10.1089/aid.2012.0123

Ndembi, N; Lyagoba, F; Nanteza, B; Kushemererwa, G; Serwanga, J; Katongole-Mbidde, E; Grosskurth, H; Kaleebu, P; Uganda HIV Drug Resistance Working Group; (2008) Transmitted antiretroviral drug resistance surveillance among newly HIV type 1-diagnosed women attending an antenatal clinic in Entebbe, Uganda. AIDS research and human retroviruses, 24 (6). pp. 889-895. ISSN 0889-2229 DOI: https://doi.org/10.1089/aid.2007.0317 Full text not available from this repository.

Ndembi, Nicaise; Goodall, Ruth L; Dunn, David T; McCormick, Adele; Burke, Andy; Lyagoba, Fred; Munderi, Paula; Katundu, Pauline; Kityo, Cissy; Robertson, Val; +7 more... Yirrell, David L; Walker, A Sarah; Gibb, Diane M; Gilks, Charles F; Kaleebu, Pontiano; Pillay, Deenan; Development of Antiretroviral Treatment in Africa Virology Group; (2010) Viral rebound and emergence of drug resistance in the absence of viral load testing: a randomized comparison between zidovudine-lamivudine plus Nevirapine and zidovudine-lamivudine plus Abacavir. The Journal of infectious diseases, 201 (1). pp. 106-113. ISSN 0022-1899 DOI: https://doi.org/10.1086/648590 Full text not available from this repository.

Nkurunungi, Gyaviira; Nassuuna, Jacent; Natukunda, Agnes; Zirimenya, Ludoviko; Walusimbi, Bridgious; Zziwa, Christopher; Ninsiima, Caroline; Kabagenyi, Joyce; Kabuubi, Prossy N; van Dam, Govert J; +14 more... Corstjens, Paul LAM; Kayiwa, John; Kizza, Moses; Mutebe, Alex; Nakazibwe, Esther; Akello, Florence A; Sewankambo, Moses; Kiwanuka, Samuel; Cose, Stephen; Wajja, Anne; Kaleebu, Pontiano; Webb, Emily L; Elliott, Alison M; POPVAC trial team; (2024) The effect of intensive praziquantel administration on vaccine-specific responses among schoolchildren in Ugandan schistosomiasis-endemic islands (POPVAC A): an open-label, randomised controlled trial. The Lancet. Global health, 12 (11). e1826-e1837. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(24)00280-8

Nkurunungi, Gyaviira; Zirimenya, Ludoviko; Natukunda, Agnes; Nassuuna, Jacent; Oduru, Gloria; Ninsiima, Caroline; Zziwa, Christopher; Akello, Florence; Kizindo, Robert; Akello, Mirriam; +7 more... Kaleebu, Pontiano; Wajja, Anne; Luzze, Henry; Cose, Stephen; Webb, Emily; Elliott, Alison M; POPVAC trial team; (2021) Population differences in vaccine responses (POPVAC): scientific rationale and cross-cutting analyses for three linked, randomised controlled trials assessing the role, reversibility and mediators of immunomodulation by chronic infections in the tropics. BMJ open, 11 (2). e040425-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2020-040425

Ntale, Roman Saba; Rutayisire, Gad; Mujyarugamba, Pierre; Shema, Eliah; Greatorex, Jane; Frost, Simon David William; Kaleebu, Pontiano; (2018) HIV seroprevalence, self-reported STIs and associated risk factors among men who have sex with men: a cross-sectional study in Rwanda, 2015. Sexually transmitted infections, 95 (1). pp. 71-74. ISSN 1368-4973 DOI: https://doi.org/10.1136/sextrans-2017-053311

Nyakarahuka, Luke; Shoemaker, Trevor R; Balinandi, Stephen; Chemos, Godfrey; Kwesiga, Benon; Mulei, Sophia; Kyondo, Jackson; Tumusiime, Alex; Kofman, Aaron; Masiira, Ben; +37 more... Whitmer, Shannon; Brown, Shelley; Cannon, Debi; Chiang, Cheng-Feng; Graziano, James; Morales-Betoulle, Maria; Patel, Ketan; Zufan, Sara; Komakech, Innocent; Natseri, Nasan; Chepkwurui, Philip Musobo; Lubwama, Bernard; Okiria, Jude; Kayiwa, Joshua; Nkonwa, Innocent H; Eyu, Patricia; Nakiire, Lydia; Okarikod, Edward Chelangat; Cheptoyek, Leonard; Wangila, Barasa Emmanuel; Wanje, Michael; Tusiime, Patrick; Bulage, Lilian; Mwebesa, Henry G; Ario, Alex R; Makumbi, Issa; Nakinsige, Anne; Muruta, Allan; Nanyunja, Miriam; Homsy, Jaco; Zhu, Bao-Ping; Nelson, Lisa; Kaleebu, Pontiano; Rollin, Pierre E; Nichol, Stuart T; Klena, John D; Lutwama, Julius J; (2019) Marburg virus disease outbreak in Kween District Uganda, 2017: Epidemiological and laboratory findings. PLoS neglected tropical diseases, 13 (3). e0007257-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007257

Obuku, Andrew Ekii; Asiki, Gershim; Abaasa, Andrew; Ssonko, Isaac; Harari, Alexandre; van Dam, Govert J; Corstjens, Paul L; Joloba, Moses; Ding, Song; Mpendo, Juliet; +6 more... Nielsen, Leslie; Kamali, Anatoli; Elliott, Alison M; Pantaleo, Giuseppe; Kaleebu, Pontiano; Pala, Pietro; (2016) Effect of Schistosoma mansoni Infection on Innate and HIV-1-Specific T-Cell Immune Responses in HIV-1-Infected Ugandan Fisher Folk. AIDS research and human retroviruses, 32 (7). pp. 668-675. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2015.0274

Okoboi, Stephen; Castelnuovo, Barbara; Moore, David M; Musaazi, Joseph; Kambugu, Andrew; Birungi, Josephine; Kaleebu, Pontiano; Nanfuka, Mastula; Kamya, Moses R; Van Rie, Annelies; (2018) Risky sexual behavior among patients on long-term antiretroviral therapy: a prospective cohort study in urban and rural Uganda. AIDS research and therapy, 15 (1). 15-. ISSN 1742-6405 DOI: https://doi.org/10.1186/s12981-018-0203-1

Okoboi, Stephen; Ding, Erin; Persuad, Steven; Wangisi, Jonathan; Birungi, Josephine; Shurgold, Susan; Kato, Darius; Nyonyintono, Maureen; Egessa, Aggrey; Bakanda, Celestin; +3 more... Munderi, Paula; Kaleebu, Pontiano; Moore, David M; (2015) Community-based ART distribution system can effectively facilitate long-term program retention and low-rates of death and virologic failure in rural Uganda. AIDS research and therapy, 12 (1). 37-. ISSN 1742-6405 DOI: https://doi.org/10.1186/s12981-015-0077-4

Oluka, Gerald Kevin; Namubiru, Patricia; Kato, Laban; Ankunda, Violet; Gombe, Ben; Cotten, Matthew; COVID-19 Immunoprofiling Team; Musenero, Monica; Kaleebu, Pontiano; Fox, Julie; +1 more... Serwanga, Jennifer; (2023) Optimisation and Validation of a conventional ELISA and cut-offs for detecting and quantifying anti-SARS-CoV-2 Spike, RBD, and Nucleoprotein IgG, IgM, and IgA antibodies in Uganda. Frontiers in immunology, 14. 1113194-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2023.1113194

Omooja, Jonah; Bbosa, Nicholas; Lule, Dan Bugembe; Nannyonjo, Maria; Lunkuse, Sandra; Nassolo, Faridah; Nabirye, Stella Esther; Suubi, Hamidah Namagembe; Kaleebu, Pontiano; Ssemwanga, Deogratius; (2022) HIV-1 drug resistance genotyping success rates and correlates of Dried-blood spots and plasma specimen genotyping failure in a resource-limited setting. BMC Infectious Diseases, 22 (1). 474-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-022-07453-9

Omooja, Jonah; Nannyonjo, Maria; Sanyu, Grace; Nabirye, Stella E; Nassolo, Faridah; Lunkuse, Sandra; Kapaata, Anne; Segujja, Farouk; Kateete, David Patrick; Ssebaggala, Eric; +5 more... Bbosa, Nicholas; Aling, Emmanuel; Nsubuga, Rebecca N; Kaleebu, Pontiano; Ssemwanga, Deogratius; (2019) Rates of HIV-1 virological suppression and patterns of acquired drug resistance among fisherfolk on first-line antiretroviral therapy in Uganda. The Journal of antimicrobial chemotherapy, 74 (10). pp. 3021-3029. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkz261

Orf, Gregory S; Bbosa, Nicholas; Berg, Michael G; Downing, Robert; Weiss, Sonja L; Ssemwanga, Deogratius; Ssekagiri, Alfred; Ashraf, Shirin; da Silva Filipe, Ana; Kiiza, Ronald; +13 more... Buule, Joshua; Namagembe, Hamidah Suubi; Nabirye, Stella Esther; Kayiwa, John; Deng, Lul Lojok; Wani, Gregory; Maror, James A; Baguma, Andrew; Mogga, Juma JH; Kamili, Saleem; Thomson, Emma C; Kaleebu, Pontiano; Cloherty, Gavin A; (2024) The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotype 1 in North, Central, and East Africa. Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 124. 105667-. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2024.105667 Item availability may be restricted.

Pala, Pietro; Serwanga, Jennifer; Watera, Christine; Ritchie, Adam J; Moodie, Zoe; Wang, Maggie; Goonetilleke, Nilu; Birabwa, Ester; Hughes, Peter; Senkaali, David; +6 more... Nakiboneka, Ritah; Grosskurth, Heiner; Haynes, Bart; McMichael, Andrew; Kaleebu, Pontiano; Center for HIV/AIDS Vaccine Immunology; (2013) Quantitative and qualitative differences in the T cell response to HIV in uninfected Ugandans exposed or unexposed to HIV-infected partners. Journal of virology, 87 (16). pp. 9053-9063. ISSN 0022-538X DOI: https://doi.org/10.1128/JVI.00721-13 Full text not available from this repository.

Petersen, Eskild; Ntoumi, Francine; Hui, David S; Abubakar, Aisha; Kramer, Laura D; Obiero, Christina; Tambyah, Paul Anantharajah; Blumberg, Lucille; Yapi, Richard; Al-Abri, Seif; +34 more... Pinto, Tatiana de Castro Abreu; Yeboah-Manu, Dorothy; Haider, Najmul; Asogun, Danny; Velavan, Thirumalaisamy P; Kapata, Nathan; Bates, Matthew; Ansumana, Rashid; Montaldo, Chiara; Mucheleng'anga, Luchenga; Tembo, John; Mwaba, Peter; Himwaze, Cordelia M; Hamid, Muzamil Mahdi Abdel; Mfinanga, Sayoki; Mboera, Leonard; Raj, Tajudeen; Aklillu, Eleni; Veas, Francisco; Edwards, Sarah; Kaleebu, Pontiano; McHugh, Timothy D; Chakaya, Jeremiah; Nyirenda, Thomas; Bockarie, Moses; Nyasulu, Peter S; Wejse, Christian; Muyembe-Tamfum, Jean-Jacques; Azhar, Esam I; Maeurer, Markus; Nachega, Jean B; Kock, Richard; Ippolito, Giuseppe; Zumla, Alimuddin; (2022) Emergence of new SARS-CoV-2 Variant of Concern Omicron (B.1.1.529) - highlights Africa's research capabilities, but exposes major knowledge gaps, inequities of vaccine distribution, inadequacies in global COVID-19 response and control efforts. International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 114. pp. 268-272. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2021.11.040

Petkov, Stefan; Herrera, Carolina; Else, Laura; Lebina, Limakatso; Opoka, Daniel; Seiphetlo, Thabiso B; Pillay, Azure-Dee Ap; Mugaba, Susan; Namubiru, Patricia; Odoch, Geoffrey; +9 more... Ssemata, Andrew S; Serwanga, Jennifer; Kaleebu, Pontiano; Webb, Emily L; Khoo, Saye; Martinson, Neil; Gray, Clive M; Fox, Julie; Chiodi, Francesca; (2022) Short-term oral pre-exposure prophylaxis against HIV-1 modulates the transcriptome of foreskin tissue in young men in Africa. Frontiers in immunology, 13. 1009978-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2022.1009978

Petkov, Stefan; Herrera, Carolina; Else, Laura; Mugaba, Susan; Namubiru, Patricia; Odoch, Geoffrey; Opoka, Daniel; Pillay, Azure-Dee AP; Seiphetlo, Thabiso B; Serwanga, Jennifer; +9 more... Ssemata, Andrew S; Kaleebu, Pontiano; Webb, Emily L; Khoo, Saye; Lebina, Limakatso; Gray, Clive M; Martinson, Neil; Fox, Julie; Chiodi, Francesca; (2022) Mobilization of systemic CCL4 following HIV pre-exposure prophylaxis in young men in Africa. Frontiers in Immunology, 13. 965214-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2022.965214

Prentice, Sarah; Webb, Emily L; Dockrell, Hazel M; Kaleebu, Pontiano; Elliott, Alison M; Cose, Stephen; (2015) Investigating the non-specific effects of BCG vaccination on the innate immune system in Ugandan neonates: study protocol for a randomised controlled trial. Trials, 16 (1). 149-. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-015-0682-5

Prentice, Sarah; Webb, Emily L; Dockrell, Hazel M; Kaleebu, Pontiano; Elliott, Alison M; Cose, Stephen; (2020) Correction to: Investigating the non-specific effects of BCG vaccination on the innate immune system in Ugandan neonates: study protocol for a randomised controlled trial. TRIALS, 21 (1). 707-. ISSN 1745-6215 DOI: https://doi.org/10.1186/s13063-020-04594-7

Price, Huw; Dunn, David; Zachary, Tamale; Vudriko, Tobias; Chirara, Michael; Kityo, Cissy; Munderi, Paula; Spyer, Moira; Hakim, James; Gilks, Charles; +4 more... Kaleebu, Pontiano; Pillay, Deenan; Gilson, Richard; DART Virology Group; (2017) Hepatitis B serological markers and plasma DNA concentrations. AIDS (London, England), 31 (8). pp. 1109-1117. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000001454

Price, Matt A; Kilembe, William; Ruzagira, Eugene; Karita, Etienne; Inambao, Mubiana; Sanders, Eduard J; Anzala, Omu; Allen, Susan; Edward, Vinodh A; Kaleebu, Pontiano; +20 more... Fast, Patricia E; Rida, Wasima; Kamali, Anatoli; Hunter, Eric; Tang, Jianming; Lakhi, Shabir; Mutua, Gaudensia; Bekker, Linda Gail; Abu-Baker, Ggayi; Tichacek, Amanda; Chetty, Paramesh; Latka, Mary H; Maenetje, Pholo; Makkan, Heeran; Hare, Jonathan; Kibengo, Freddie; Priddy, Fran; Landais, Elise; Chinyenze, Kundai; Gilmour, Jill; (2021) Cohort Profile: IAVI's HIV epidemiology and early infection cohort studies in Africa to support vaccine discovery. International journal of epidemiology (IJE), 50 (1). pp. 29-30. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyaa100

Price, Matt A; Rida, Wasima; Kilembe, William; Karita, Etienne; Inambao, Mubiana; Ruzagira, Eugene; Kamali, Anatoli; Sanders, Eduard J; Anzala, Omu; Hunter, Eric; +18 more... Allen, Susan; Edward, Vinodh A; Wall, Kristin M; Tang, Jianming; Fast, Patricia E; Kaleebu, Pontiano; Lakhi, Shabir; Mutua, Gaudensia; Bekker, Linda Gail; Abu-Baker, Ggayi; Tichacek, Amanda; Chetty, Paramesh; Latka, Mary H; Maenetje, Pholo; Makkan, Heeran; Kibengo, Freddie; Priddy, Fran; Gilmour, Jill; (2019) Control of the HIV-1 Load Varies by Viral Subtype in a Large Cohort of African Adults With Incident HIV-1 Infection. The Journal of infectious diseases, 220 (3). pp. 432-441. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiz127

Pujol-Hodge, Emma; Salazar-Gonzalez, Jesus F; Ssemwanga, Deogratius; Charlebois, Edwin D; Ayieko, James; Grant, Heather E; Liegler, Teri; Atkins, Katherine E; Kaleebu, Pontiano; Kamya, Moses R; +3 more... Petersen, Maya; Havlir, Diane V; Leigh Brown, Andrew J; (2022) Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. Viruses, 14 (8). p. 1673. ISSN 1999-4915 DOI: https://doi.org/10.3390/v14081673

Ramaley, Patricia A; French, Neil; Kaleebu, Pontiano; Gilks, Charles; Whitworth, James; Hill, Adrian VS; (2002) HIV in Africa (Communication arising): chemokine-receptor genes and AIDS risk. Nature, 417 (6885). 140-. ISSN 0028-0836 DOI: https://doi.org/10.1038/417140a Full text not available from this repository.

Rametse, Cosnet L; Webb, Emily L; Herrera, Carolina; Alinde, Berenice; Besethi, Asiphe; Motaung, Bongani; Mbangiwa, Tshepiso; Leach, Lloyd; Sebaa, Shorok; Pillay, Azure-Dee AP; +18 more... Seiphetlo, Thabiso B; Malhangu, Boitshoko; Petkov, Stefan; Else, Laura; Mugaba, Susan; Namubiru, Patricia; Odoch, Geoffrey; Opoka, Daniel; Serwanga, Jennifer; Ssemata, Andrew S; Kaleebu, Pontiano; Khoo, Saye; Lebina, Limakatso; Martinson, Neil; Chiodi, Francesca; Fox, Julie; Gray, Clive M; CHAPS consortium; (2023) A randomized clinical trial of on-demand oral pre-exposure prophylaxis does not modulate lymphoid/myeloid HIV target cell density in the foreskin. AIDS (London, England), 37 (11). pp. 1651-1659. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000003619

Ratmann, Oliver; Wymant, Chris; Colijn, Caroline; Danaviah, Siva; Essex, M; Frost, Simon DW; Gall, Astrid; Gaiseitsiwe, Simani; Grabowski, Mary; Gray, Ronald; +22 more... Guindon, Stephane; von Haeseler, Arndt; Kaleebu, Pontiano; Kendall, Michelle; Kozlov, Alexey; Manasa, Justen; Minh, Bui Quang; Moyo, Sikhulile; Novitsky, Vladimir; Nsubuga, Rebecca; Pillay, Sureshnee; Quinn, Thomas C; Serwadda, David; Ssemwanga, Deogratius; Stamatakis, Alexandros; Trifinopoulos, Jana; Wawer, Maria; Leigh Brown, Andrew; de Oliveira, Tulio; Kellam, Paul; Pillay, Deenan; Fraser, Christophe; (2017) HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences. AIDS research and human retroviruses, 33 (11). pp. 1083-1098. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2017.0061

Redd, Andrew D; Ssemwanga, Deogratius; Vandepitte, Judith; Wendel, Sarah K; Ndembi, Nicaise; Bukenya, Justine; Nakubulwa, Susan; Grosskurth, Heiner; Parry, Chris M; Martens, Craig; +4 more... Bruno, Daniel; Porcella, Stephen F; Quinn, Thomas C; Kaleebu, Pontiano; (2014) Rates of HIV-1 superinfection and primary HIV-1 infection are similar in female sex workers in Uganda. AIDS (London, England), 28 (14). pp. 2147-2152. ISSN 0269-9370 DOI: https://doi.org/10.1097/QAD.0000000000000365

Rhee, Soo-Yon; Blanco, Jose Luis; Jordan, Michael R; Taylor, Jonathan; Lemey, Philippe; Varghese, Vici; Hamers, Raph L; Bertagnolio, Silvia; de Wit, Tobias F Rinke; Aghokeng, Avelin F; +63 more... Albert, Jan; Avi, Radko; Avila-Rios, Santiago; Bessong, Pascal O; Brooks, James I; Boucher, Charles AB; Brumme, Zabrina L; Busch, Michael P; Bussmann, Hermann; Chaix, Marie-Laure; Chin, Bum Sik; D'Aquin, Toni T; De Gascun, Cillian F; Derache, Anne; Descamps, Diane; Deshpande, Alaka K; Djoko, Cyrille F; Eshleman, Susan H; Fleury, Herve; Frange, Pierre; Fujisaki, Seiichiro; Harrigan, P Richard; Hattori, Junko; Holguin, Africa; Hunt, Gillian M; Ichimura, Hiroshi; Kaleebu, Pontiano; Katzenstein, David; Kiertiburanakul, Sasisopin; Kim, Jerome H; Kim, Sung Soon; Li, Yanpeng; Lutsar, Irja; Morris, Lynn; Ndembi, Nicaise; Kee, Peng NG; Paranjape, Ramesh S; Peeters, Martine; Poljak, Mario; Price, Matt A; Ragonnet-Cronin, Manon L; Reyes-Terán, Gustavo; Rolland, Morgane; Sirivichayakul, Sunee; Smith, Davey M; Soares, Marcelo A; Soriano, Vincent V; Ssemwanga, Deogratius; Stanojevic, Maja; Stefani, Mariane A; Sugiura, Wataru; Sungkanuparph, Somnuek; Tanuri, Amilcar; Tee, Kok Keng; Truong, Hong-Ha M; van de Vijver, David AMC; Vidal, Nicole; Yang, Chunfu; Yang, Rongge; Yebra, Gonzalo; Ioannidis, John PA; Vandamme, Anne-Mieke; Shafer, Robert W; (2015) Correction: Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis. PLoS medicine, 12 (6). e1001845-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001845

Rhee, Soo-Yon; Varghese, Vici; Holmes, Susan P; Van Zyl, Gert U; Steegen, Kim; Boyd, Mark A; Cooper, David A; Nsanzimana, Sabin; Saravanan, Shanmugam; Charpentier, Charlotte; +32 more... de Oliveira, Tulio; Etiebet, Mary-Ann A; Garcia, Federico; Goedhals, Dominique; Gomes, Perpetua; Günthard, Huldrych F; Hamers, Raph L; Hoffmann, Christopher J; Hunt, Gillian; Jiamsakul, Awachana; Kaleebu, Pontiano; Kanki, Phyllis; Kantor, Rami; Kerschberger, Bernhard; Marconi, Vincent C; D'amour Ndahimana, Jean; Ndembi, Nicaise; Ngo-Giang-Huong, Nicole; Rokx, Casper; Santoro, Maria M; Schapiro, Jonathan M; Schmidt, Daniel; Seu, Lillian; Sigaloff, Kim CE; Sirivichayakul, Sunee; Skhosana, Lindiwe; Sunpath, Henry; Tang, Michele; Yang, Chunfu; Carmona, Sergio; Gupta, Ravindra K; Shafer, Robert W; (2017) Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration. EBioMedicine, 18. pp. 225-235. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2017.03.024

Romano, Erin Rottinghaus; Sleeman, Katrina; Hall-Eidson, Patricia; Zeh, Clement; Bhairavabhotla, Ravikiran; Zhang, Guoqing; Adhikari, Amitabh; Alemnji, George; Cardo, Yolanda Rebello; Pinheiro, Ana; +45 more... Pocongo, Barbara; Eno, Laura T; Shang, Judith D; Ndongmo, Clement B; Rosario, Hilda; Moreno, Orquidea; De León, Lucia Aurora De La Cruz; Fonjungo, Peter; Kabwe, Constantin; Ahuke-Mundeke, Steve; Gama, Dan; Dlamini, Sindisiwe; Maphalala, Gugu; Abreha, Tefsay; Purfield, Anne; Gebrehiwot, Yared Tedla; Desalegn, Daniel Melese; Basiye, Frank; Mwangi, Jane; Bowen, Nancy; Mengistu, Yohannes; Lecher, Shirley; Kampira, Elizabeth; Kaba, Muluken; Bitilinyu-Bangoh, Joseph; Masamha, Gillian; Viegas, Sofia Omar; Beard, R Suzanne; van Rooyen, Gerhard; Shiningavamwe, Andreas N; I J, McPaul; Iriemenam, Nnaemeka C; Mba, Nwando; Okoi, Catherine; Katoro, Joel; Kenyi, Dennis L; Bior, Bior K; Mwangi, Christina; Nabadda, Susan; Kaleebu, Pontiano; Yingst, Samuel L; Chikwanda, Prisca; Veri, Levi; Simbi, Raivi; Alexander, Heather; (2022) Contribution of PEPFAR-Supported HIV and TB Molecular Diagnostic Networks to COVID-19 Testing Preparedness in 16 Countries. Emerging infectious diseases, 28 (13). S59-S68. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2813.220789

Rutakumwa, Rwamahe; Ssebunnya, Joshua; Mugisha, James; Mpango, Richard Steven; Tusiime, Christine; Kyohangirwe, Leticia; Taasi, Geoffrey; Sentongo, Hafsa; Kaleebu, Pontiano; Patel, Vikram; +1 more... Kinyanda, Eugene; (2021) Stakeholders' perspectives on integrating the management of depression into routine HIV care in Uganda: qualitative findings from a feasibility study. International journal of mental health systems, 15 (1). 63-. ISSN 1752-4458 DOI: https://doi.org/10.1186/s13033-021-00486-8

SPARTAC Trial Investigators; Fidler, Sarah; Porter, Kholoud; Ewings, Fiona; Frater, John; Ramjee, Gita; Cooper, David; Rees, Helen; Fisher, Martin; Schechter, Mauro; +11 more... Kaleebu, Pontiano; Tambussi, Giuseppe; Kinloch, Sabine; Miro, Jose M; Kelleher, Anthony; McClure, Myra; Kaye, Steve; Gabriel, Michelle; Phillips, Rodney; Weber, Jonathan; Babiker, Abdel; (2013) Short-course antiretroviral therapy in primary HIV infection. The New England journal of medicine, 368 (3). pp. 207-217. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa1110039

Salome, Tino; Kasamba, Ivan; Mayanja, Billy Nsubuga; Kazooba, Patrick; Were, Jackson; Kaleebu, Pontiano; Munderi, Paula; CoLTART study team; (2016) The effect of Tenofovir on renal function among Ugandan adults on long-term antiretroviral therapy: a cross-sectional enrolment analysis. AIDS research and therapy, 13 (1). 28-. ISSN 1742-6405 DOI: https://doi.org/10.1186/s12981-016-0113-z

Seeley, Janet; Nakiyingi-Miiro, Jessica; Kamali, Anatoli; Mpendo, Juliet; Asiki, Gershim; Abaasa, Andrew; De Bont, Jan; Nielsen, Leslie; Kaleebu, Pontiano; CHIVTUM Study Team; (2012) High HIV incidence and socio-behavioral risk patterns in fishing communities on the shores of Lake Victoria, Uganda. Sexually transmitted diseases, 39 (6). pp. 433-439. ISSN 0148-5717 DOI: https://doi.org/10.1097/OLQ.0b013e318251555d Full text not available from this repository.

Segujja, Farouk; Omooja, Jonah; Lunkuse, Sandra; Nanyonjo, Maria; Nabirye, Stella E; Nassolo, Faridah; Bugembe, Daniel L; Bbosa, Nicholas; Kateete, David P; Ssenyonga, William; +5 more... Mayanja, Yunia; Nsubuga, Rebecca N; Seeley, Janet; Kaleebu, Pontiano; Ssemwanga, Deogratius; (2020) High Levels of Acquired HIV Drug Resistance Following Virological Nonsuppression in HIV-Infected Women from a High-Risk Cohort in Uganda. AIDS research and human retroviruses, 36 (9). pp. 782-791. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2019.0279

Senkaali, D; Kebba, A; Shafer, LA; Campbell, GR; Loret, EP; Van Der Paal, L; Grosskurth, H; Yirrell, D; Kaleebu, P; (2008) Tat-specific binding IgG and disease progression in HIV type 1-infected Ugandans. AIDS research and human retroviruses, 24 (4). pp. 587-594. ISSN 0889-2229 DOI: https://doi.org/10.1089/aid.2007.0171 Full text not available from this repository.

Serwanga, Jennifer; Ankunda, Violet; Sembera, Jackson; Kato, Laban; Oluka, Gerald Kevin; Baine, Claire; Odoch, Geoffrey; Kayiwa, John; Auma, Betty Oliver; Jjuuko, Mark; +9 more... Nsereko, Christopher; Cotten, Matthew; Onyachi, Nathan; Muwanga, Moses; Lutalo, Tom; Fox, Julie; Musenero, Monica; Kaleebu, Pontiano; COVID-19 Immunoprofiling Team; (2023) Rapid, early, and potent Spike-directed IgG, IgM, and IgA distinguish asymptomatic from mildly symptomatic COVID-19 in Uganda, with IgG persisting for 28 months. Frontiers in immunology, 14. 1152522-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2023.1152522

Serwanga, Jennifer; Mugaba, Susan; Betty, Auma; Pimego, Edward; Walker, Sarah; Munderi, Paula; Gilks, Charles; Gotch, Frances; Grosskurth, Heiner; Kaleebu, Pontiano; (2011) CD8 T-Cell Responses before and after Structured Treatment Interruption in Ugandan Adults Who Initiated ART with CD4 T Cells <200 Cell/μL: The DART Trial STI Substudy. AIDS research and treatment, 2011. 875028-. ISSN 2090-1240 DOI: https://doi.org/10.1155/2011/875028

Serwanga, Jennifer; Nakiboneka, Ritah; Mugaba, Susan; Magambo, Brian; Ndembi, Nicaise; Gotch, Frances; Kaleebu, Pontiano; (2015) Frequencies of Gag-restricted T-cell escape "footprints" differ across HIV-1 clades A1 and D chronically infected Ugandans irrespective of host HLA B alleles. Vaccine, 33 (14). pp. 1664-1672. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.02.037

Serwanga, Jennifer; Shafer, Leigh Anne; Pimego, Edward; Auma, Betty; Watera, Christine; Rowland, Samantha; Yirrell, David; Pala, Pietro; Grosskurth, Heiner; Whitworth, Jimmy; +2 more... Gotch, Frances; Kaleebu, Pontiano; (2009) Host HLA B*allele-associated multi-clade Gag T-cell recognition correlates with slow HIV-1 disease progression in antiretroviral therapy-naïve Ugandans. PloS one, 4 (1). e4188-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0004188

Shepherd, James G; Ashraf, Shirin; Salazar-Gonzalez, Jesus F; Salazar, Maria G; Downing, Robert G; Bukenya, Henry; Jerome, Hanna; Mpanga, Joseph T; Davis, Chris; Tong, Lily; +19 more... Sreenu, Vattipally B; Atiku, Linda A; Logan, Nicola; Kajik, Ezekiel; Mukobi, Yafesi; Mungujakisa, Cyrus; Olowo, Michael V; Tibo, Emmanuel; Wunna, Fred; Jackson Ireland, Hollie; Blunsum, Andrew E; Owolabi, Iyanuoluwani; da Silva Filipe, Ana; Bwogi, Josephine; Willett, Brian J; Lutwama, Julius J; Streicker, Daniel G; Kaleebu, Pontiano; Thomson, Emma C; (2024) Widespread human exposure to ledanteviruses in Uganda: A population study. PLoS neglected tropical diseases, 18 (7). e0012297-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0012297

Soremekun, Opeyemi; Karhunen, Ville; He, Yiyan; Rajasundaram, Skanda; Liu, Bowen; Gkatzionis, Apostolos; Soremekun, Chisom; Udosen, Brenda; Musa, Hanan; Silva, Sarah; +17 more... Kintu, Christopher; Mayanja, Richard; Nakabuye, Mariam; Machipisa, Tafadzwa; Mason, Amy; Vujkovic, Marijana; Zuber, Verena; Soliman, Mahmoud; Mugisha, Joseph; Nash, Oyekanmi; Kaleebu, Pontiano; Nyirenda, Moffat; Chikowore, Tinashe; Nitsch, Dorothea; Burgess, Stephen; Gill, Dipender; Fatumo, Segun; (2022) Lipid traits and type 2 diabetes risk in African ancestry individuals: A Mendelian Randomization study. EBioMedicine, 78. 103953-. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2022.103953

Ssebunnya, Joshua; Mugisha, James; Mpango, Richard; Kyohangirwe, Leticia; Taasi, Geofrey; Ssentongo, Hafsa; Kaleebu, Pontiano; Patel, Vikram; Kinyanda, Eugene; (2021) Using Theory of Change to inform the design of the HIV+D intervention for integrating the management of depression in routine HIV care in Uganda. PloS one, 16 (11). e0259425-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0259425

Ssekagiri, Alfred; Jjingo, Daudi; Lujumba, Ibra; Bbosa, Nicholas; Bugembe, Daniel L; Kateete, David P; Jordan, I King; Kaleebu, Pontiano; Ssemwanga, Deogratius; (2022) QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data. Bioinformatics advances, 2 (1). vbac089-. ISSN 2635-0041 DOI: https://doi.org/10.1093/bioadv/vbac089

Ssemwanga, Deogratius; Asio, Juliet; Watera, Christine; Nannyonjo, Maria; Nassolo, Faridah; Lunkuse, Sandra; Salazar-Gonzalez, Jesus F; Salazar, Maria G; Sanyu, Grace; Lutalo, Tom; +12 more... Kabuga, Usher; Ssewanyana, Isaac; Namatovu, Faridah; Namayanja, Grace; Namale, Alice; Raizes, Elliot; Kaggwa, Mugagga; Namuwenge, Norah; Kirungi, Wilford; Katongole-Mbidde, Edward; Kaleebu, Pontiano; Uganda HIV Drug Resistance Technical Working Group; (2020) Prevalence of viral load suppression, predictors of virological failure and patterns of HIV drug resistance after 12 and 48 months on first-line antiretroviral therapy: a national cross-sectional survey in Uganda. The Journal of antimicrobial chemotherapy, 75 (5). pp. 1280-1289. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkz561

Ssemwanga, Deogratius; Bbosa, Nicholas; Nsubuga, Rebecca N; Ssekagiri, Alfred; Kapaata, Anne; Nannyonjo, Maria; Nassolo, Faridah; Karabarinde, Alex; Mugisha, Joseph; Seeley, Janet; +3 more... Yebra, Gonzalo; Leigh Brown, Andrew; Kaleebu, Pontiano; (2020) The Molecular Epidemiology and Transmission Dynamics of HIV Type 1 in a General Population Cohort in Uganda. Viruses, 12 (11). p. 1283. DOI: https://doi.org/10.3390/v12111283

Ssemwanga, Deogratius; Doria-Rose, Nicole A; Redd, Andrew D; Shiakolas, Andrea R; Longosz, Andrew F; Nsubuga, Rebecca N; Mayanja, Billy N; Asiki, Gershim; Seeley, Janet; Kamali, Anatoli; +10 more... Ransier, Amy; Darko, Samuel; Walker, Michael P; Bruno, Daniel; Martens, Craig; Douek, Daniel; Porcella, Stephen F; Quinn, Thomas C; Mascola, John R; Kaleebu, Pontiano; (2018) Characterization of the Neutralizing Antibody Response in a Case of Genetically Linked HIV Superinfection. The Journal of infectious diseases, 217 (10). pp. 1530-1534. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy071

Ssemwanga, Deogratius; Kapaata, Anne; Lyagoba, Frederick; Magambo, Brian; Nanyonjo, Maria; Mayanja, Billy N; Parry, Chris M; Kaleebu, Pontiano; (2012) Low drug resistance levels among drug-naive individuals with recent HIV type 1 infection in a rural clinical cohort in southwestern Uganda. AIDS research and human retroviruses, 28 (12). pp. 1784-1787. ISSN 0889-2229 DOI: https://doi.org/10.1089/AID.2012.0090 Full text not available from this repository.

Ssemwanga, Deogratius; Lyagoba, Frederick; Ndembi, Nicaise; Mayanja, Billy N; Larke, Natasha; Wang, Shuyi; Baalwa, Joshua; Williamson, Carolyn; Grosskurth, Heiner; Kaleebu, Pontiano; (2011) Multiple HIV-1 infections with evidence of recombination in heterosexual partnerships in a low risk Rural Clinical Cohort in Uganda. Virology, 411 (1). pp. 113-131. ISSN 0042-6822 DOI: https://doi.org/10.1016/j.virol.2010.12.025

Ssemwanga, Deogratius; Ndembi, Nicaise; Lyagoba, Fred; Bukenya, Justine; Seeley, Janet; Vandepitte, Judith; Grosskurth, Heiner; Kaleebu, Pontiano; (2012) HIV type 1 subtype distribution, multiple infections, sexual networks, and partnership histories in female sex workers in Kampala, Uganda. AIDS research and human retroviruses, 28 (4). pp. 357-365. ISSN 0889-2229 DOI: https://doi.org/10.1089/aid.2011.0024

Ssemwanga, Deogratius; Ndembi, Nicaise; Lyagoba, Frederick; Magambo, Brian; Kapaata, Anne; Bukenya, Justine; Lubega, George W; Bertagnolio, Silvia; Vandepitte, Judith; Grosskurth, Heiner; +1 more... Kaleebu, Pontiano; (2012) Transmitted antiretroviral drug resistance among drug-naive female sex workers with recent infection in Kampala, Uganda. Clinical infectious diseases, 54 Sup (suppl_). S339-S342. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir937

Ssemwanga, Deogratius; Nsubuga, Rebecca N; Mayanja, Billy N; Lyagoba, Frederick; Magambo, Brian; Yirrell, Dave; Van der Paal, Lieve; Grosskurth, Heiner; Kaleebu, Pontiano; (2013) Effect of HIV-1 subtypes on disease progression in rural Uganda: a prospective clinical cohort study. PloS one, 8 (8). e71768-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0071768

Ssetaala, Ali; Nakiyingi-Miiro, Jessica; Asiimwe, Stephen; Nanvubya, Annet; Mpendo, Juliet; Asiki, Gershim; Nielsen, Leslie; Kiwanuka, Noah; Seeley, Janet; Kamali, Anatoli; +1 more... Kaleebu, Pontiano; (2015) Recruitment and retention of women in fishing communities in HIV prevention research. The Pan African Medical Journal, 21 (104). 104-. ISSN 1937-8688 DOI: https://doi.org/10.11604/pamj.2015.21.104.4962

Ssetaala, Ali; Nakiyingi-Miiro, Jessica; Asiki, Gershim; Kyakuwa, Nassim; Mpendo, Juliet; Van Dam, Govert J; Corstjens, Paul L; Pala, Pietro; Nielsen, Leslie; Bont, Jan De; +5 more... Pantaleo, Giuseppe; Kiwanuka, Noah; Kaleebu, Pontiano; Kamali, Anatoli; Elliott, Alison M; (2015) Schistosoma mansoni and HIV acquisition in fishing communities of Lake Victoria, Uganda: a nested case-control study. Tropical medicine & international health, 20 (9). pp. 1190-1195. ISSN 1360-2276 DOI: https://doi.org/10.1111/tmi.12531

Stanton, Tara; Boxall, Sally; Bennett, Andrea; Kaleebu, Pontiano; Watera, Christine; Whitworth, Jimmy; French, Neil; Dawes, Ritu; Hill, Adrian VS; Bodmer, Walter; +2 more... Beverley, Peter CL; Tchilian, Elma Z; (2004) CD45 variant alleles: possibly increased frequency of a novel exon 4 CD45 polymorphism in HIV seropositive Ugandans. Immunogenetics, 56 (2). pp. 107-110. ISSN 0093-7711 DOI: https://doi.org/10.1007/s00251-004-0668-z Full text not available from this repository.

Stevens, Wendy; Kamali, Anatoli; Karita, Etienne; Anzala, Omu; Sanders, Eduard J; Jaoko, Walter; Kaleebu, Pontiano; Mulenga, Joseph; Dally, Len; Fast, Pat; +13 more... Gilmour, Jill; Farah, Bashir; Birungi, Josephine; Hughes, Peter; Manigart, Olivier; Stevens, Gwynn; Yates, Sarah; Thomson, Helen; von Lieven, Andrea; Krebs, Marietta; Price, Matt A; Stoll-Johnson, Lisa; Ketter, Nzeera; (2008) Baseline morbidity in 2,990 adult African volunteers recruited to characterize laboratory reference intervals for future HIV vaccine clinical trials. PloS one, 3 (4). e2043-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0002043

Sutherland, Katherine A; Goodall, Ruth L; McCormick, Adele; Kapaata, Anne; Lyagoba, Fred; Kaleebu, Pontiano; Thiltgen, Geant; Gilks, Charles F; Spyer, Moira; Kityo, Cissy; +5 more... Pillay, Deenan; Dunn, David; Gupta, Ravindra K; DART Virology Group; DART Trial Team; (2015) Gag-Protease Sequence Evolution Following Protease Inhibitor Monotherapy Treatment Failure in HIV-1 Viruses Circulating in East Africa. AIDS research and human retroviruses, 31 (10). pp. 1032-1037. ISSN 0889-2229 DOI: https://doi.org/10.1089/aid.2015.0138

Sutherland, Katherine A; Parry, Chris M; McCormick, Adele; Kapaata, Anne; Lyagoba, Fred; Kaleebu, Pontiano; Gilks, Charles F; Goodall, Ruth; Spyer, Moira; Kityo, Cissy; +3 more... Pillay, Deenan; Gupta, Ravindra K; DART Virology Group; (2015) Evidence for Reduced Drug Susceptibility without Emergence of Major Protease Mutations following Protease Inhibitor Monotherapy Failure in the SARA Trial. PloS one, 10 (9). e0137834-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0137834

Thornhill, John; Inshaw, Jamie; Kaleebu, Pontiano; Cooper, David; Ramjee, Gita; Schechter, Mauro; Tambussi, Giuseppe; Fox, Julie; Samuel, Miriam; Miro, Jose M; +3 more... Weber, Jonathan; Porter, Kholoud; Fidler, Sarah; (2016) Brief Report: Enhanced Normalization of CD4/CD8 Ratio With Earlier Antiretroviral Therapy at Primary HIV Infection. Journal of acquired immune deficiency syndromes (1999), 73 (1). pp. 69-73. ISSN 1525-4135 DOI: https://doi.org/10.1097/QAI.0000000000001013

Thornhill, John; Inshaw, Jamie; Oomeer, Soonita; Kaleebu, Pontiano; Cooper, David; Ramjee, Gita; Schechter, Mauro; Tambussi, Giuseppe; Fox, Julie; Miro, Jose Maria; +4 more... Weber, Jonathan; Babiker, Abdel; Porter, Kholoud; Fidler, Sarah; (2014) Enhanced normalisation of CD4/CD8 ratio with early antiretroviral therapy in primary HIV infection. Journal of the International AIDS Society, 17 (4 Supp). 19480-. ISSN 1758-2652 DOI: https://doi.org/10.7448/IAS.17.4.19480

Tino, Salome; Mayanja, Billy N; Mubiru, Michael Charles; Eling, Emmanuel; Ddumba, Edward; Kaleebu, Pontiano; Nyirenda, Moffat; (2020) Prevalence and factors associated with overweight and obesity among patients with type 2 diabetes mellitus in Uganda-a descriptive retrospective study. BMJ open, 10 (11). e039258-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2020-039258

Tino, Salome; Wekesa, Clara; Kamacooko, Onesmus; Makhoba, Anthony; Mwebaze, Raymond; Bengo, Samuel; Nabwato, Rose; Kigongo, Aisha; Ddumba, Edward; Mayanja, Billy N; +3 more... Kaleebu, Pontiano; Newton, Rob; Nyerinda, Moffat; (2019) Predictors of loss to follow up among patients with type 2 diabetes mellitus attending a private not for profit urban diabetes clinic in Uganda - a descriptive retrospective study. BMC health services research, 19 (1). 598-. ISSN 1472-6963 DOI: https://doi.org/10.1186/s12913-019-4415-4

Voronin, Yegor; Mofenson, Lynne M; Cunningham, Coleen K; Fowler, Mary G; Kaleebu, Pontiano; McFarland, Elizabeth J; Safrit, Jeffrey T; Graham, Barney S; Snow, William; (2014) HIV monoclonal antibodies: a new opportunity to further reduce mother-to-child HIV transmission. PLoS medicine, 11 (4). e1001616-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001616

Wajja, Anne; Kizito, Dennison; Nassanga, Beatrice; Nalwoga, Angela; Kabagenyi, Joyce; Kimuda, Simon; Galiwango, Ronald; Mutonyi, Gertrude; Vermaak, Samantha; Satti, Iman; +7 more... Verweij, Jaco; Tukahebwa, Edridah; Cose, Stephen; Levin, Jonathan; Kaleebu, Pontiano; Elliott, Alison M; McShane, Helen; (2017) The effect of current Schistosoma mansoni infection on the immunogenicity of a candidate TB vaccine, MVA85A, in BCG-vaccinated adolescents: An open-label trial. PLoS neglected tropical diseases, 11 (5). e0005440-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005440

Wajja, Anne; Namutebi, Milly; Apule, Barbara; Oduru, Gloria; Kiwanuka, Samuel; Akello, Mirriam; Nassanga, Beatrice; Kabagenyi, Joyce; Mpiima, Juma; Vermaak, Samantha; +9 more... Lawrie, Alison; Satti, Iman; Verweij, Jaco; Cose, Stephen; Levin, Jonathan; Kaleebu, Pontiano; Tukahebwa, Edridah; McShane, Helen; Elliott, Alison M; (2018) Lessons from the first clinical trial of a non-licensed vaccine among Ugandan adolescents: a phase II field trial of the tuberculosis candidate vaccine, MVA85A. Wellcome open research, 3. p. 121. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14736.1 Full text not available from this repository.

Wajja, Anne; Namutebi, Milly; Apule, Barbara; Oduru, Gloria; Kiwanuka, Samuel; Akello, Mirriam; Nassanga, Beatrice; Kabagenyi, Joyce; Mpiima, Juma; Vermaak, Samantha; +9 more... Lawrie, Alison; Satti, Iman; Verweij, Jaco; Cose, Stephen; Levin, Jonathan; Kaleebu, Pontiano; Tukahebwa, Edridah; McShane, Helen; Elliott, Alison M; (2018) Lessons from the first clinical trial of a non-licensed vaccine among Ugandan adolescents: a phase II field trial of the tuberculosis candidate vaccine, MVA85A. Wellcome open research, 3. 121-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14736.1

Watera, Christine; Ssemwanga, Deogratius; Namayanja, Grace; Asio, Juliet; Lutalo, Tom; Namale, Alice; Sanyu, Grace; Ssewanyana, Isaac; Gonzalez-Salazar, Jesus Fidel; Nazziwa, Jamirah; +9 more... Nanyonjo, Maria; Raizes, Elliot; Kabuga, Usher; Mwangi, Christina; Kirungi, Wilford; Musinguzi, Joshua; Mugagga, Kaggwa; Mbidde, Edward Katongole; Kaleebu, Pontiano; (2021) HIV drug resistance among adults initiating antiretroviral therapy in Uganda. The Journal of antimicrobial chemotherapy, 76 (9). pp. 2407-2414. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dkab159

Webb, Emily L; Kyosiimire-Lugemwa, Jacqueline; Kizito, Dennison; Nkurunziza, Peter; Lule, Swaib; Muhangi, Lawrence; Muwanga, Moses; Kaleebu, Pontiano; Elliott, Alison M; (2012) The effect of anthelmintic treatment during pregnancy on HIV plasma viral load: results from a randomized, double-blind, placebo-controlled trial in Uganda. Journal of acquired immune deficiency syndromes (1999), 60 (3). pp. 307-313. ISSN 1525-4135 DOI: https://doi.org/10.1097/QAI.0b013e3182511e42

Webb, Emily L; Petkov, Stefan; Yun, Heejin; Else, Laura; Lebina, Limakatso; Serwanga, Jennifer; Pillay, Azure-Dee AP; Seiphetlo, Thabiso B; Mugaba, Susan; Namubiru, Patricia; +10 more... Odoch, Geoffrey; Opoka, Daniel; Ssemata, Andrew S; Kaleebu, Pontiano; Khoo, Saye; Martinson, Neil; Fox, Julie; Gray, Clive M; Herrera, Carolina; Chiodi, Francesca; (2024) Gene expression of tight junctions in foreskin is not affected by HIV pre-exposure prophylaxis. Frontiers in immunology, 15. 1415475-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2024.1415475

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Zacharopoulou, P; Marchi, E; Ogbe, A; Robinson, N; Brown, H; Jones, M; Parolini, L; Pace, M; Grayson, N; Kaleebu, P; +5 more... Rees, H; Fidler, S; Goulder, P; Klenerman, P; Frater, J; (2022) Expression of type I interferon-associated genes at antiretroviral therapy interruption predicts HIV virological rebound. Scientific reports, 12 (1). 462-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-04212-9

Zirimenya, Ludoviko; Natukunda, Agnes; Nassuuna, Jacent; Nkurunungi, Gyaviira; Zziwa, Christopher; Ninsiima, Caroline; Kukundakwe, Christine; Nankabirwa, Christine M; Katushabe, Charity; Namusobya, Loyce K; +14 more... Oduru, Gloria; Kabami, Grace; Kabali, Joel; Kayiwa, John; Kabagenyi, Joyce; van Dam, Govert J; Corstjens, Paul LAM; Cose, Stephen; Wajja, Anne; Staedke, Sarah G; Kaleebu, Pontiano; Elliott, Alison M; Webb, Emily L; POPVAC trial team; (2024) The effect of intermittent preventive treatment for malaria with dihydroartemisinin-piperaquine on vaccine-specific responses among schoolchildren in rural Uganda (POPVAC B): a double-blind, randomised controlled trial. The Lancet Global health, 12 (11). e1838-e1848. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(24)00281-X

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