Atkins, Katherine E; Fitzpatrick, Meagan C; Galvani, Alison P; Townsend, Jeffrey P; (2016) Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States. American journal of epidemiology, 183 (12). pp. 1159-1170. ISSN 0002-9262 DOI: https://doi.org/10.1093/aje/kwv347 Full text not available from this repository.

Atkins, Katherine E; Flasche, Stefan; (2018) Vaccination to reduce antimicrobial resistance. The Lancet Global health, 6 (3). e252-. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30043-3

Atkins, Katherine E; Hodgson, David; (2023) Vaccination of Older Adults Against Respiratory Syncytial Virus: The Final Pieces of the Puzzle. Clinical infectious diseases, 77 (3). pp. 490-491. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciad162

Atkins, Katherine E; Hodgson, David; Jit, Mark; Davies, Nicholas G; (2022) Evaluating the impact of Respiratory Syncytial Virus immunisation strategies on antibiotic use and drug resistant bacterial infections in England. Wellcome Open Research, 7. p. 286. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.18183.1

Atkins, Katherine E; Lafferty, Erin I; Deeny, Sarah R; Davies, Nicholas G; Robotham, Julie V; Jit, Mark; (2017) Use of mathematical modelling to assess the impact of vaccines on antibiotic resistance. The Lancet infectious diseases, 18 (6). e204-e213. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30478-4 Full text not available from this repository.

Atkins, Katherine E; Lipsitch, Marc; (2018) Can antibiotic resistance be reduced by vaccinating against respiratory disease? The lancet Respiratory medicine, 6 (11). pp. 820-821. ISSN 2213-2600 DOI: https://doi.org/10.1016/S2213-2600(18)30328-X Full text not available from this repository.

Atkins, Katherine E; Pandey, Abhishek; Wenzel, Natasha S; Skrip, Laura; Yamin, Dan; Nyenswah, Tolbert G; Fallah, Mosoka; Bawo, Luke; Medlock, Jan; Altice, Frederick L; +3 more... Townsend, Jeffrey; Ndeffo-Mbah, Martial L; Galvani, Alison P; (2016) Retrospective Analysis of the 2014-2015 Ebola Epidemic in Liberia. The American journal of tropical medicine and hygiene, 94 (4). pp. 833-839. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.15-0328

Atkins, Katherine E; Wenzel, Natasha S; Ndeffo-Mbah, Martial; Altice, Frederick L; Townsend, Jeffrey P; Galvani, Alison P; (2015) Under-reporting and case fatality estimates for emerging epidemics. BMJ (Clinical research ed), 350 (mar16 ). h1115-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.h1115

Atkins, Katherine; van Hoek, Albert Jan; Watson, Conall; Baguelin, Marc; Choga, Lethiwe; Patel, Anika; Raj, Thara; Jit, Mark; Griffiths, Ulla; (2016) Seasonal influenza vaccination delivery through community pharmacists in England: evaluation of the London pilot. BMJ open, 6 (2). e009739-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2015-009739

Banks, Christopher J; Colman, Ewan; Doherty, Thomas; Tearne, Oliver; Arnold, Mark; Atkins, Katherine E; Balaz, Daniel; Beaunée, Gaël; Bessell, Paul R; Enright, Jessica; +4 more... Kleczkowski, Adam; Rossi, Gianluigi; Ruget, Anne-Sophie; Kao, Rowland R; (2022) SCoVMod – a spatially explicit mobility and deprivation adjusted model of first wave COVID-19 transmission dynamics. Wellcome Open Research, 7. p. 161. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.17716.1

Baxter, James; Langhorne, Sarah; Shi, Ting; Tully, Damien C; Villabona-Arenas, Ch Julián; Hué, Stéphane; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E; (2023) Inferring the multiplicity of founder variants initiating HIV-1 infection: a systematic review and individual patient data meta-analysis. Lancet Microbe, 4 (2). e102-e112. ISSN 2666-5247 DOI: https://doi.org/10.1016/S2666-5247(22)00327-5

Baxter, James; Villabona-Arenas, Ch Julián; Thompson, Robin N; Hué, Stéphane; Regoes, Roland R; Kouyos, Roger D; Günthard, Huldrych F; Albert, Jan; Leigh Brown, Andrew; Atkins, Katherine E; (2024) Reconciling founder variant multiplicity of HIV-1 infection with the rate of CD4+ decline. Journal of the Royal Society, Interface / the Royal Society, 21 (219). 20240255-. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2024.0255

Blassel, Luc; Zhukova, Anna; Villabona-Arenas, Christian J; Atkins, Katherine E; Hué, Stéphane; Gascuel, Olivier; (2021) Drug resistance mutations in HIV: new bioinformatics approaches and challenges. Current opinion in virology, 51. pp. 56-64. ISSN 1879-6257 DOI: https://doi.org/10.1016/j.coviro.2021.09.009

Camacho, Anton; Bouhenia, Malika; Alyusfi, Reema; Alkohlani, Abdulhakeem; Naji, Munna Abdulla Mohammed; de Radiguès, Xavier; Abubakar, Abdinasir M; Almoalmi, Abdulkareem; Seguin, Caroline; Sagrado, Maria Jose; +16 more... Poncin, Marc; McRae, Melissa; Musoke, Mohammed; Rakesh, Ankur; Porten, Klaudia; Haskew, Christopher; Atkins, Katherine E; Eggo, Rosalind M; Azman, Andrew S; Broekhuijsen, Marije; Saatcioglu, Mehmet Akif; Pezzoli, Lorenzo; Quilici, Marie-Laure; Al-Mesbahy, Abdul Rahman; Zagaria, Nevio; Luquero, Francisco J; (2018) Cholera epidemic in Yemen, 2016-18: an analysis of surveillance data. The Lancet Global health, 6 (6). e680-e690. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30230-4

Capewell, Paul; Atkins, Katie; Weir, William; Jamonneau, Vincent; Camara, Mamadou; Clucas, Caroline; Swar, Nono-Raymond K; Ngoyi, Dieudonne M; Rotureau, Brice; Garside, Paul; +3 more... Galvani, Alison P; Bucheton, Bruno; MacLeod, Annette; (2019) Resolving the apparent transmission paradox of African sleeping sickness. PLOS Biology, 17 (1). e3000105-. ISSN 1545-7885 DOI: https://doi.org/10.1371/journal.pbio.3000105

Chae, Chungman; Davies, Nicholas G; Jit, Mark; Atkins, Katherine E; (2020) Effect of Pediatric Influenza Vaccination on Antibiotic Resistance, England and Wales. Emerging infectious diseases, 26 (1). pp. 138-142. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2601.191110

Coltart, Cordelia EM; Edmunds, W John; Atkins, Katherine E; (2017) The 2013-2016 Ebola epidemic: multidisciplinary success conceals a missed opportunity. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20160292. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2016.0292

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +15 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; CMMID COVID-19 Working Group; COVID-19 Genomics UK (COG-UK) Consortium; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2021) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. Science (New York, N.Y.), 372 (6538). 149-+. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abg3055

Davies, Nicholas G; Abbott, Sam; Barnard, Rosanna C; Jarvis, Christopher I; Kucharski, Adam J; Munday, James D; Pearson, Carl AB; Russell, Timothy W; Tully, Damien C; Washburne, Alex D; +13 more... Wenseleers, Tom; Gimma, Amy; Waites, William; Wong, Kerry LM; van Zandvoort, Kevin; Silverman, Justin D; Diaz-Ordaz, Karla; Keogh, Ruth; Eggo, Rosalind M; Funk, Sebastian; Jit, Mark; Atkins, Katherine E; Edmunds, W John; (2020) Estimated transmissibility and impact of SARS-CoV-2 lineage B.1.1.7 in England. MedRxiv. DOI: https://doi.org/10.1101/2020.12.24.20248822 Item availability may be restricted.

Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E; (2021) Modeling the effect of vaccination on selection for antibiotic resistance in Streptococcus pneumonia e. Science translational medicine, 13 (606). eaaz8690-eaaz8690. ISSN 1946-6234 DOI: https://doi.org/10.1126/scitranslmed.aaz8690

Davies, Nicholas G; Flasche, Stefan; Jit, Mark; Atkins, Katherine E; (2019) Within-host dynamics shape antibiotic resistance in commensal bacteria. Nature ecology & evolution, 3 (3). pp. 440-449. DOI: https://doi.org/10.1038/s41559-018-0786-x

Endo 遠藤彰, Akira; CMMID COVID-19 Working Group; Uchida 内田満夫, Mitsuo; Liu 刘扬, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian; (2022) Simulating respiratory disease transmission within and between classrooms to assess pandemic management strategies at schools. Proceedings of the National Academy of Sciences of the United States of America, 119 (37). e2203019119-. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2203019119

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2020) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome Open Res, 5. 239-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16344.2

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2020) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome open research, 5. 239-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16344.1

Endo, Akira; Centre for the Mathematical Modelling of Infectious Diseases COV; Leclerc, Quentin J; Knight, Gwenan M; Medley, Graham F; Atkins, Katherine E; Funk, Sebastian; Kucharski, Adam J; (2021) Implication of backward contact tracing in the presence of overdispersed transmission in COVID-19 outbreaks. Wellcome Open Research, 5. 239-. DOI: https://doi.org/10.12688/wellcomeopenres.16344.3

Endo, Akira; Uchida, Mitsuo; Hayashi, Naoki; Liu, Yang; Atkins, Katherine E; Kucharski, Adam J; Funk, Sebastian; (2021) Within and between classroom transmission patterns of seasonal influenza among primary school students in Matsumoto city, Japan. Proc Natl Acad Sci U S A, 118 (46). e2112605118-e2112605118. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2112605118

Fitzpatrick, Meagan C; Wenzel, Natasha S; Scarpino, Samuel V; Althouse, Benjamin M; Atkins, Katherine E; Galvani, Alison P; Townsend, Jeffrey P; (2016) Cost-effectiveness of next-generation vaccines: The case of pertussis. Vaccine, 34 (29). pp. 3405-3411. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.04.010

Flasche, Stefan; Atkins, Katherine E; (2018) Balancing Benefits and Risks of Antibiotic Use. The Journal of infectious diseases, 218 (9). pp. 1351-1353. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy344

Hodgson, David; Atkins, Katherine E; Baguelin, Marc; Panovska-Griffiths, Jasmina; Thorrington, Dominic; van Hoek, Albert Jan; Zhao, Hongxin; Fragaszy, Ellen; Hayward, Andrew C; Pebody, Richard; (2019) Estimates for quality of life loss due to Respiratory Syncytial Virus. Influenza Other Respir Viruses, 14 (1). pp. 19-27. ISSN 1750-2640 DOI: https://doi.org/10.1111/irv.12686

Hodgson, David; Baguelin, Marc; van Leeuwen, Edwin; Panovska-Griffiths, Jasmina; Ramsay, Mary; Pebody, Richard; Atkins, Katherine E; (2017) Effect of mass paediatric influenza vaccination on existing influenza vaccination programmes in England and Wales: a modelling and cost-effectiveness analysis. The lancet Public health, 2 (2). e74-e81. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(16)30044-5

Hodgson, David; Koltai, Mihaly; Krauer, Fabienne; Flasche, Stefan; Jit, Mark; Atkins, Katherine E; (2022) Optimal Respiratory Syncytial Virus intervention programmes using Nirsevimab in England and Wales. Vaccine, 40 (49). pp. 7151-7157. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2022.10.041

Hodgson, David; Pebody, Richard; Panovska-Griffiths, Jasmina; Baguelin, Marc; Atkins, Katherine E; (2020) Evaluating the next generation of RSV intervention strategies: a mathematical modelling study and cost-effectiveness analysis. BMC MEDICINE, 18 (1). 348-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01802-8

Hodgson, David; Wilkins, Neil; van Leeuwen, Edwin; Watson, Conall H; Crofts, Jonathan; Flasche, Stefan; Jit, Mark; Atkins, Katherine E; (2024) Protecting infants against RSV disease: an impact and cost-effectiveness comparison of long-acting monoclonal antibodies and maternal vaccination. The Lancet Regional Health Europe, 38. 100829-. ISSN 2666-7762 DOI: https://doi.org/10.1016/j.lanepe.2023.100829

Hollingsworth, T Déirdre; Adams, Emily R; Anderson, Roy M; Atkins, Katherine; Bartsch, Sarah; Basáñez, María-Gloria; Behrend, Matthew; Blok, David J; Chapman, Lloyd AC; Coffeng, Luc; +36 more... Courtenay, Orin; Crump, Ron E; de Vlas, Sake J; Dobson, Andy; Dyson, Louise; Farkas, Hajnal; Galvani, Alison P; Gambhir, Manoj; Gurarie, David; Irvine, Michael A; Jervis, Sarah; Keeling, Matt J; Kelly-Hope, Louise; King, Charles; Lee, Bruce Y; Le Rutte, Epke A; Lietman, Thomas M; Ndeffo-Mbah, Martial; Medley, Graham F; Michael, Edwin; Pandey, Abhishek; Peterson, Jennifer K; Pinsent, Amy; Porco, Travis C; Richardus, Jan Hendrik; Reimer, Lisa; Rock, Kat S; Singh, Brajendra K; Stolk, Wilma; Swaminathan, Subramanian; Torr, Steve J; Townsend, Jeffrey; Truscott, James; Walker, Martin; Zoueva, Alexandra; NTD Modelling Consortium; (2015) Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases. Parasites & vectors, 8 (1). 630-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1235-1

Ibuka, Yoko; Ohkusa, Yasushi; Sugawara, Tamie; Chapman, Gretchen B; Yamin, Dan; Atkins, Katherine E; Taniguchi, Kiyosu; Okabe, Nobuhiko; Galvani, Alison P; (2015) Social contacts, vaccination decisions and influenza in Japan. Journal of epidemiology and community health, 70 (2). pp. 162-167. ISSN 0143-005X DOI: https://doi.org/10.1136/jech-2015-205777

Jit, Mark; Ng, Dorothy Hui Lin; Luangasanatip, Nantasit; Sandmann, Frank; Atkins, Katherine E; Robotham, Julie V; Pouwels, Koen B; (2020) Quantifying the economic cost of antibiotic resistance and the impact of related interventions: rapid methodological review, conceptual framework and recommendations for future studies. BMC MEDICINE, 18 (1). 38-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-1507-2

Knight, Gwenan M; Davies, Nicholas G; Colijn, Caroline; Coll, Francesc; Donker, Tjibbe; Gifford, Danna R; Glover, Rebecca E; Jit, Mark; Klemm, Elizabeth; Lehtinen, Sonja; +9 more... Lindsay, Jodi A; Lipsitch, Marc; Llewelyn, Martin J; Mateus, Ana LP; Robotham, Julie V; Sharland, Mike; Stekel, Dov; Yakob, Laith; Atkins, Katherine E; (2019) Mathematical modelling for antibiotic resistance control policy: do we know enough? BMC infectious diseases, 19 (1). 1011-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-019-4630-y

Leclerc, Quentin J; Fuller, Naomi M; Keogh, Ruth H; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G; ISARIC4C Investigators; CMMID COVID-19 Working Group; Atkins, Katherine E; Procter, Simon R; +1 more... Knight, Gwenan M; ISARIC4C Investigators, CMMID COVID-19 Working Group; (2021) Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England. BMC health services research, 21 (1). 566-. ISSN 1472-6963 DOI: https://doi.org/10.1186/s12913-021-06509-x

Li, Meng; Taylor, Eric G; Atkins, Katherine E; Chapman, Gretchen B; Galvani, Alison P; (2016) Stimulating Influenza Vaccination via Prosocial Motives. PloS one, 11 (7). e0159780-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0159780

Li, You; Hodgson, David; Wang, Xin; Atkins, Katherine E; Feikin, Daniel R; Nair, Harish; (2021) Respiratory syncytial virus seasonality and prevention strategy planning for passive immunisation of infants in low-income and middle-income countries: a modelling study. The Lancet. Infectious diseases, 21 (9). pp. 1303-1312. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(20)30703-9

Lindsey, Benjamin B; Villabona-Arenas, Ch Julián; Campbell, Finlay; Keeley, Alexander J; Parker, Matthew D; Shah, Dhruv R; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta; +18 more... Foulkes, Benjamin H; Wolverson, Paige; Louka, Stavroula F; Christou, Stella; State, Amy; Johnson, Katie; Raza, Mohammad; Hsu, Sharon; Jombart, Thibaut; Cori, Anne; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans, Cariad M; Partridge, David G; Atkins, Katherine E; Hué, Stéphane; de Silva, Thushan I; (2022) Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. Nature communications, 13 (1). 671-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-022-28291-y

Luyten, Jeroen; Kessels, Roselinde; Atkins, Katherine E; Jit, Mark; van Hoek, Albert Jan; (2019) Quantifying the public's view on social value judgments in vaccine decision-making: A discrete choice experiment. SOCIAL SCIENCE & MEDICINE, 228. pp. 181-193. ISSN 0277-9536 DOI: https://doi.org/10.1016/j.socscimed.2019.03.025

Munday, James D; Atkins, Katherine E; Klinkenberg, Don; Meurs, Marc; Fleur, Erik; Hahné, Susan Jm; Wallinga, Jacco; Jan van Hoek, Albert; (2024) Estimating the risk and spatial spread of measles in populations with high MMR uptake: Using school-household networks to understand the 2013 to 2014 outbreak in the Netherlands. PLoS medicine, 21 (10). e1004466-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1004466

Munday, James D; Pebody, Richard; Atkins, Katherine E; van Hoek, Albert Jan; (2021) Changing socio-economic and ethnic disparities in influenza/A/H1N1 infection early in the 2009 UK epidemic: a descriptive analysis. BMC INFECTIOUS DISEASES, 21 (1). 1243-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-021-06936-5

Munday, James D; Sherratt, Katharine; Meakin, Sophie; Endo, Akira; Pearson, Carl AB; Hellewell, Joel; Abbott, Sam; Bosse, Nikos I; CMMID COVID-19 Working Group; Atkins, Katherine E; +4 more... Wallinga, Jacco; Edmunds, W John; van Hoek, Albert Jan; Funk, Sebastian; (2021) Implications of the school-household network structure on SARS-CoV-2 transmission under school reopening strategies in England. Nature communications, 12 (1). 1942-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-22213-0

Munday, James D; van Hoek, Albert Jan; Edmunds, W John; Atkins, Katherine E; (2018) Quantifying the impact of social groups and vaccination on inequalities in infectious diseases using a mathematical model. BMC medicine, 16 (1). 162-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1152-1

Ndeffo-Mbah, Martial L; Pandey, Abhishek; Atkins, Katherine E; Aksoy, Serap; Galvani, Alison P; (2019) The impact of vector migration on the effectiveness of strategies to control gambiense human African trypanosomiasis. PLoS neglected tropical diseases, 13 (12). e0007903-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0007903

Pandey, Abhishek; Atkins, Katherine E; Bucheton, Bruno; Camara, Mamadou; Aksoy, Serap; Galvani, Alison P; Ndeffo-Mbah, Martial L; (2015) Evaluating long-term effectiveness of sleeping sickness control measures in Guinea. Parasites & vectors, 8 (1). 550-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1121-x

Pandey, Abhishek; Atkins, Katherine E; Medlock, Jan; Wenzel, Natasha; Townsend, Jeffrey P; Childs, James E; Nyenswah, Tolbert G; Ndeffo-Mbah, Martial L; Galvani, Alison P; (2014) Strategies for containing Ebola in West Africa. Science (New York, NY), 346 (6212). pp. 991-995. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.1260612 Full text not available from this repository.

Piot, Peter; Coltart, Cordelia EM; Atkins, Katherine E; (2017) Preface: 'The 2013-2016 West African Ebola epidemic: data, decision-making and disease control'. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). p. 20170020. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2017.0020

Pitzer, Virginia E; Atkins, Katherine E; de Blasio, Birgitte Freiesleben; Van Effelterre, Thierry; Atchison, Christina J; Harris, John P; Shim, Eunha; Galvani, Alison P; Edmunds, W John; Viboud, Cécile; +4 more... Patel, Manish M; Grenfell, Bryan T; Parashar, Umesh D; Lopman, Ben A; (2012) Direct and indirect effects of rotavirus vaccination: comparing predictions from transmission dynamic models. PloS one, 7 (8). e42320-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0042320

Pujol-Hodge, Emma; Salazar-Gonzalez, Jesus F; Ssemwanga, Deogratius; Charlebois, Edwin D; Ayieko, James; Grant, Heather E; Liegler, Teri; Atkins, Katherine E; Kaleebu, Pontiano; Kamya, Moses R; +3 more... Petersen, Maya; Havlir, Diane V; Leigh Brown, Andrew J; (2022) Detection of HIV-1 Transmission Clusters from Dried Blood Spots within a Universal Test-and-Treat Trial in East Africa. Viruses, 14 (8). p. 1673. ISSN 1999-4915 DOI: https://doi.org/10.3390/v14081673

Rock, KS; Pandey, A; Ndeffo-Mbah, ML; Atkins, KE; Lumbala, C; Galvani, A; Keeling, MJ; (2017) Data-driven models to predict the elimination of sleeping sickness in former Equateur province of DRC. Epidemics, 18. pp. 101-112. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2017.01.006

Rock, Kat S; Ndeffo-Mbah, Martial L; Castaño, Soledad; Palmer, Cody; Pandey, Abhishek; Atkins, Katherine E; Ndung'u, Joseph M; Hollingsworth, T Déirdre; Galvani, Alison; Bever, Caitlin; +2 more... Chitnis, Nakul; Keeling, Matt J; (2018) Assessing Strategies Against Gambiense Sleeping Sickness Through Mathematical Modeling. Clinical infectious diseases, 66 (suppl_). S286-S292. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy018

Taylor, Eric; Atkins, Katherine E; Medlock, Jan; Li, Meng; Chapman, Gretchen B; Galvani, Alison P; (2015) Cross-Cultural Household Influence on Vaccination Decisions. Medical decision making, 36 (7). pp. 844-853. ISSN 0272-989X DOI: https://doi.org/10.1177/0272989X15591007 Full text not available from this repository.

Thomas, Sara L; Walker, Jemma L; Fenty, Justin; Atkins, Katherine E; Elliot, Alex J; Hughes, Helen E; Stowe, Julia; Ladhani, Shamez; Andrews, Nick J; (2016) Impact of the national rotavirus vaccination programme on acute gastroenteritis in England and associated costs averted. Vaccine, 35 (4). pp. 680-686. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.11.057

Villabona-Arenas, Ch Julián; Hall, Matthew; Lythgoe, Katrina A; Gaffney, Stephen G; Regoes, Roland R; Hué, Stéphane; Atkins, Katherine E; (2020) Number of HIV-1 founder variants is determined by the recency of the source partner infection. SCIENCE, 369 (6499). pp. 103-108. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.aba5443

Villabona-Arenas, Christian Julian; Hué, Stéphane; Baxter, James AC; Hall, Matthew; Lythgoe, Katrina A; Bradley, John; Atkins, Katherine E; (2022) Using phylogenetics to infer HIV-1 transmission direction between known transmission pairs. Proceedings of the National Academy of Sciences of the United States of America, 119 (38). e2210604119-. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.2210604119

Wells, Chad; Yamin, Dan; Ndeffo-Mbah, Martial L; Wenzel, Natasha; Gaffney, Stephen G; Townsend, Jeffrey P; Meyers, Lauren Ancel; Fallah, Mosoka; Nyenswah, Tolbert G; Altice, Frederick L; +2 more... Atkins, Katherine E; Galvani, Alison P; (2015) Harnessing case isolation and ring vaccination to control Ebola. PLoS neglected tropical diseases, 9 (5). e0003794-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003794

Wuerz, Terence C; Kassim, Sameer S; Atkins, Katherine E; (2020) Acquisition of extended-spectrum beta-lactamase-producing Enterobacteriaceae (ESBL-PE) carriage after exposure to systemic antimicrobials during travel: Systematic review and meta-analysis. Travel medicine and infectious disease, 37. 101823-. ISSN 1477-8939 DOI: https://doi.org/10.1016/j.tmaid.2020.101823

Yamin, Dan; Atkins, Katherine E; Remy, Vanessa; Galvani, Alison P; (2016) Cost-Effectiveness of Rotavirus Vaccination in France-Accounting for Indirect Protection. Value in health, 19 (6). pp. 811-819. ISSN 1098-3015 DOI: https://doi.org/10.1016/j.jval.2016.05.011

Yang, Juan; Atkins, Katherine E; Feng, Luzhao; Baguelin, Marc; Wu, Peng; Yan, Han; Lau, Eric HY; Wu, Joseph T; Liu, Yang; Cowling, Benjamin J; +2 more... Jit, Mark; Yu, Hongjie; (2020) Cost-effectiveness of introducing national seasonal influenza vaccination for adults aged 60 years and above in mainland China: a modelling analysis. BMC medicine, 18 (1). 90-. DOI: https://doi.org/10.1186/s12916-020-01545-6

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