Abdullahi, Osman; Karani, Angela; Tigoi, Caroline C; Mugo, Daisy; Kungu, Stella; Wanjiru, Eva; Jomo, Jane; Musyimi, Robert; Lipsitch, Marc; Scott, J Anthony G; (2012) The prevalence and risk factors for pneumococcal colonization of the nasopharynx among children in Kilifi District, Kenya. PloS one, 7 (2). e30787-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0030787

Abdullahi, Osman; Karani, Angela; Tigoi, Caroline C; Mugo, Daisy; Kungu, Stella; Wanjiru, Eva; Jomo, Jane; Musyimi, Robert; Lipsitch, Marc; Scott, J Anthony G; (2012) Rates of acquisition and clearance of pneumococcal serotypes in the nasopharynges of children in Kilifi District, Kenya. The Journal of infectious diseases, 206 (7). pp. 1020-1029. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jis447

Abdullahi, Osman; Nyiro, Joyce; Lewa, Pole; Slack, Mary; Scott, J Anthony G; (2008) The descriptive epidemiology of Streptococcus pneumoniae and Haemophilus influenzae nasopharyngeal carriage in children and adults in Kilifi district, Kenya. The Pediatric infectious disease journal, 27 (1). pp. 59-64. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0b013e31814da70c Full text not available from this repository.

Abdullahi, Osman; Wanjiru, Eva; Musyimi, Robert; Glass, Nina; Scott, J Anthony G; (2007) Validation of nasopharyngeal sampling and culture techniques for detection of Streptococcus pneumoniae in children in Kenya. Journal of clinical microbiology, 45 (10). pp. 3408-3410. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01393-07 Full text not available from this repository.

Abuga, Kelvin M; Muriuki, John Muthii; Uyoga, Sophie M; Mwai, Kennedy; Makale, Johnstone; Mogire, Reagan M; Macharia, Alex W; Mohammed, Shebe; Muthumbi, Esther; Mwarumba, Salim; +6 more... Mturi, Neema; Bejon, Philip; Scott, J Anthony G; Nairz, Manfred; Williams, Thomas N; Atkinson, Sarah H; (2021) Hepcidin regulation in Kenyan children with severe malaria and non-typhoidal Salmonella bacteremia. Haematologica, 107 (7). pp. 1589-1598. ISSN 0390-6078 DOI: https://doi.org/10.3324/haematol.2021.279316

Adamu, Aishatu L; Ojal, J; Abubakar, Isa A; Odeyemi, Kofo A; Bello, Musa M; Okoromah, Christy AN; Karia, Boniface; Karani, Angela; Akech, Donald; Inem, Victor; +2 more... Scott, J Anthony G; Adetifa, Ifedayo MO; (2023) The impact of introduction of the 10-valent pneumococcal conjugate vaccine on pneumococcal carriage in Nigeria. Nature communications, 14 (1). 2666-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-023-38277-z

Adamu, Aishatu Lawal; Karia, Boniface; Bello, Musa M; Jahun, Mahmoud G; Gambo, Safiya; Ojal, John; Scott, Anthony; Jemutai, Julie; Adetifa, Ifedayo M; (2022) The cost of illness for childhood clinical pneumonia and invasive pneumococcal disease in Nigeria. BMJ GLOBAL HEALTH, 7 (1). e007080-e007080. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2021-007080

Adetifa, Ifedayo MO; Adamu, Aishatu L; Karani, Angela; Waithaka, Michael; Odeyemi, Kofo A; Okoromah, Christy AN; Bello, Mohammed M; Abubakar, Isa S; Inem, Victor; Scott, J Anthony G; (2018) Nasopharyngeal Pneumococcal Carriage in Nigeria: a two-site, population-based survey. Scientific reports, 8 (1). 3509-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-21837-5

Adetifa, Ifedayo MO; Bwanaali, Tahreni; Wafula, Jackline; Mutuku, Alex; Karia, Boniface; Makumi, Anne; Mwatsuma, Pauline; Bauni, Evasius; Hammitt, Laura L; Nokes, D James; +6 more... Maree, Ephantus; Tabu, Collins; Kamau, Tatu; Mataza, Christine; Williams, Thomas N; Scott, J Anthony G; (2016) Cohort Profile: The Kilifi Vaccine Monitoring Study. International journal of epidemiology, 46 (3). 792-792h. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyw202

Adetifa, Ifedayo MO; Karia, Boniface; Mutuku, Alex; Bwanaali, Tahreni; Makumi, Anne; Wafula, Jackline; Chome, Martina; Mwatsuma, Pauline; Bauni, Evasius; Hammitt, Laura L; +5 more... Mataza, Christine; Tabu, Collins; Kamau, Tatu; Williams, Thomas N; Scott, J Anthony G; (2018) Coverage and timeliness of vaccination and the validity of routine estimates: Insights from a vaccine registry in Kenya. Vaccine, 36 (52). pp. 7965-7974. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.11.005

Adetifa, Ifedayo MO; Uyoga, Sophie; Gitonga, John N; Mugo, Daisy; Otiende, Mark; Nyagwange, James; Karanja, Henry K; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; +25 more... Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng'ang'a, Wangari; Rombo, Charles; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Bottomley, Christian; Kagucia, Eunice W; Gallagher, Katherine E; Etyang, Anthony; Voller, Shirine; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Bejon, Philip; Ochola-Oyier, Lynette I; Agweyu, Ambrose; Scott, J Anthony G; Warimwe, George M; (2021) Temporal trends of SARS-CoV-2 seroprevalence during the first wave of the COVID-19 epidemic in Kenya. Nature communications, 12 (1). 3966-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-24062-3

Aiken, AM; Wanyoro, AK; Mwangi, J; Mulingwa, P; Wanjohi, J; Njoroge, J; Juma, F; Mugoya, IK; Scott, JAG; Hall, AJ; (2013) Evaluation of surveillance for surgical site infections in Thika Hospital, Kenya. The Journal of hospital infection, 83 (2). pp. 140-145. ISSN 0195-6701 DOI: https://doi.org/10.1016/j.jhin.2012.11.003

Aiken, Alexander M; Allegranzi, Benedetta; Scott, J Anthony; Mehtar, Shaheen; Pittet, Didier; Grundmann, Hajo; (2014) Antibiotic resistance needs global solutions. The Lancet infectious diseases, 14 (7). pp. 550-551. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(14)70709-1 Full text not available from this repository.

Aiken, Alexander M; Mturi, Neema; Morpeth, Susan C; Seale, Anna C; Scott, J Anthony G; (2012) Paediatric hospital-acquired bacteraemia in developing countries – Authors' reply. Lancet, 379 (9825). pp. 1484-1485. ISSN 0140-6736 DOI: https://doi.org/10.1016/s0140-6736(12)60625-4 Full text not available from this repository.

Aiken, Alexander M; Mturi, Neema; Njuguna, Patricia; Mohammed, Shebe; Berkley, James A; Mwangi, Isaiah; Mwarumba, Salim; Kitsao, Barnes S; Lowe, Brett S; Morpeth, Susan C; +4 more... Hall, Andrew J; Khandawalla, Iqbal; Scott, J Anthony G; Kilifi Bacteraemia Surveillance Group; (2011) Risk and causes of paediatric hospital-acquired bacteraemia in Kilifi District Hospital, Kenya: a prospective cohort study. Lancet, 378 (9808). pp. 2021-2027. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(11)61622-X

Aiken, Alexander M; Mutuku, Irene M; Sabat, Artur J; Akkerboom, Viktoria; Mwangi, Jonah; Scott, J Anthony G; Morpeth, Susan C; Friedrich, Alexander W; Grundmann, Hajo; (2014) Carriage of Staphylococcus aureus in Thika Level 5 Hospital, Kenya: a cross-sectional study. Antimicrobial resistance and infection control, 3 (1). 22-. ISSN 2047-2994 DOI: https://doi.org/10.1186/2047-2994-3-22

Aiken, Alexander M; Nyamwaya, Brian; Madrid, Lola; Edessa, Dumessa; Labi, Appiah-Korang; Obeng-Nkrumah, Noah; Mwabaya, William; Chimenya, Mabvuto; Cocker, Derek; Iregbu, Kenneth C; +9 more... Princewill-Nwajiobi, Philip IP; Dramowski, Angela; Sonda, Tolbert; Mmbaga, Blandina Theophil; Ojok, David; Fwoloshi, Sombo; Scott, J Anthony G; Whitelaw, Andrew; MBIRA study collaborators; (2023) Circumstances for treatment and control of invasive Enterobacterales infections in eight hospitals across sub-Saharan Africa: a cross-sectional study. Gates open research, 7. 21-. ISSN 2572-4754 DOI: https://doi.org/10.12688/gatesopenres.14267.1

Aiken, Alexander M; Nyamwaya, Brian; Madrid, Lola; Edessa, Dumessa; Labi, Appiah-Korang; Obeng-Nkrumah, Noah; Mwabaya, William; Chimenya, Mabvuto; Cocker, Derek; Iregbu, Kenneth C; +9 more... Princewill-Nwajiobi, Philip IP; Dramowski, Angela; Sonda, Tolbert; Mmbaga, Blandina Theophil; Ojok, David; Fwoloshi, Sombo; Scott, J Anthony G; Whitelaw, Andrew; MBIRA study collaborators; (2024) Circumstances for treatment and control of invasive Enterobacterales infections in eight hospitals across sub-Saharan Africa: a cross-sectional study. Gates open research, 7. 21-. ISSN 2572-4754 DOI: https://doi.org/10.12688/gatesopenres.14267.1

Aiken, Alexander M; Wanyoro, Anthony K; Mwangi, Jonah; Juma, Francis; Mugoya, Isaac K; Scott, J Anthony G; (2013) Changing use of surgical antibiotic prophylaxis in Thika Hospital, Kenya: a quality improvement intervention with an interrupted time series design. PloS one, 8 (11). e78942-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0078942

Akumu, Angela Oloo; English, Mike; Scott, J Anthony G; Griffiths, Ulla K; (2007) Economic evaluation of delivering Haemophilus influenzae type b vaccine in routine immunization services in Kenya. Bulletin of the World Health Organization, 85 (7). pp. 511-518. ISSN 0042-9686 DOI: https://doi.org/10.2471/blt.06.034686

Anderson, Suzanne T; Kaforou, Myrsini; Brent, Andrew J; Wright, Victoria J; Banwell, Claire M; Chagaluka, George; Crampin, Amelia C; Dockrell, Hazel M; French, Neil; Hamilton, Melissa S; +15 more... Hibberd, Martin L; Kern, Florian; Langford, Paul R; Ling, Ling; Mlotha, Rachel; Ottenhoff, Tom HM; Pienaar, Sandy; Pillay, Vashini; Scott, J Anthony G; Twahir, Hemed; Wilkinson, Robert J; Coin, Lachlan J; Heyderman, Robert S; Levin, Michael; Eley, Brian; (2014) Diagnosis of childhood tuberculosis and host RNA expression in Africa. The New England journal of medicine, 370 (18). pp. 1712-1723. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa1303657

Assefa, Nega; Regassa, Lemma Demissie; Teklemariam, Zelalem; Oundo, Joseph; Madrid, Lola; Dessie, Yadeta; Scott, Jag; (2021) Seroprevalence of anti-SARS-CoV-2 antibodies in women attending antenatal care in eastern Ethiopia: a facility-based surveillance. BMJ Open, 11 (11). e055834-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2021-055834

Awori, Juliet O; Kamau, Alice; Morpeth, Susan; Kazungu, Sidi; Silaba, Micah; Sande, Joyce; Karani, Angela; Nyongesa, Sammy; Mwarumba, Salim; Musyimi, Robert; +14 more... Bett, Anne; Wande, Siti; Shebe, Mohammed; Ngama, Mwanajuma; Munywoki, Patrick K; Muturi, Neema; Nokes, D James; Feikin, Daniel R; Murdoch, David R; Prosperi, Christine; O'Brien, Katherine L; Deloria Knoll, Maria; Hammitt, Laura L; Scott, J Anthony G; (2021) The Etiology of Pneumonia in HIV-uninfected Children in Kilifi, Kenya: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. The Pediatric infectious disease journal, 40 (9S). S29-S39. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000002653

Ayieko, Philip; Griffiths, Ulla K; Ndiritu, Moses; Moisi, Jennifer; Mugoya, Isaac K; Kamau, Tatu; English, Mike; Scott, J Anthony G; (2013) Assessment of health benefits and cost-effectiveness of 10-valent and 13-valent pneumococcal conjugate vaccination in Kenyan children. PloS one, 8 (6). e67324-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0067324

Baggett, Henry C; Watson, Nora L; Deloria Knoll, Maria; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; +26 more... Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Duncan, Julie; Ebruke, Bernard E; Goswami, Doli; Higdon, Melissa M; Karron, Ruth A; Moore, David P; Morpeth, Susan C; Mulindwa, Justin M; Park, Daniel E; Paveenkittiporn, Wantana; Piralam, Barameht; Prosperi, Christine; Sow, Samba O; Tapia, Milagritos D; Zaman, Khalequ; Zeger, Scott L; O'Brien, Katherine L; PERCH Study Group; (2017) Density of Upper Respiratory Colonization With Streptococcus pneumoniae and Its Role in the Diagnosis of Pneumococcal Pneumonia Among Children Aged <5 Years in the PERCH Study. Clinical infectious diseases, 64 (suppl_). S317-S327. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix100 Full text not available from this repository.

Baillie, Vicky L; Moore, David P; Mathunjwa, Azwifarwi; Baggett, Henry C; Brooks, Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Knoll, Maria Deloria; Kotloff, Karen L; +24 more... Levine, Orin S; O'Brien, Katherine L; Scott, Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Driscoll, Amanda J; Fancourt, Nicholas SS; Higdon, Melissa M; Karron, Ruth A; Morpeth, Susan C; Mulindwa, Justin M; Murdoch, David R; Park, Daniel E; Prosperi, Christine; Rahman, Mohammed Ziaur; Rahman, Mustafizur; Salaudeen, Rasheed A; Sawatwong, Pongpun; Somwe, Somwe Wa; Sow, Samba O; Tapia, Milagritos D; Simões, Eric AF; Madhi, Shabir A; (2021) Epidemiology of the Rhinovirus (RV) in African and Southeast Asian Children: A Case-Control Pneumonia Etiology Study. Viruses, 13 (7). p. 1249. ISSN 1999-4915 DOI: https://doi.org/10.3390/v13071249

Barger-Kamate, Breanna; Deloria Knoll, Maria; Kagucia, E Wangeci; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Levine, Orin S; +27 more... Madhi, Shabir A; Scott, J Anthony G; Thea, Donald M; Amornintapichet, Tussanee; Anderson, Trevor P; Awori, Juliet O; Baillie, Vicky L; Chipeta, James; DeLuca, Andrea N; Driscoll, Amanda J; Goswami, Doli; Higdon, Melissa M; Hossain, Lokman; Karron, Ruth A; Maloney, Susan; Moore, David P; Morpeth, Susan C; Mwananyanda, Lawrence; Ofordile, Ogochukwu; Olutunde, Emmanuel; Park, Daniel E; Sow, Samba O; Tapia, Milagritos D; Murdoch, David R; O'Brien, Katherine L; Kotloff, Karen L; Pneumonia Etiology Research for Child Health (PERCH) Study Group; (2016) Pertussis-Associated Pneumonia in Infants and Children From Low- and Middle-Income Countries Participating in the PERCH Study. Clinical infectious diseases, 63 (suppl ). S187-S196. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciw546

Bejon, Philip; Berkley, James A; Mwangi, Tabitha; Ogada, Edna; Mwangi, Isaiah; Maitland, Kathryn; Williams, Thomas; Scott, J Anthony G; English, Mike; Lowe, Brett S; +3 more... Peshu, Norbert; Newton, Charles RJC; Marsh, Kevin; (2007) Defining childhood severe falciparum malaria for intervention studies. PLoS medicine, 4 (8). e251-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.0040251

Bejon, Philip; Mwangi, Isaiah; Ngetsa, Caroline; Mwarumba, Salim; Berkley, James A; Lowe, Brett S; Maitland, Kathryn; Marsh, Kevin; English, Mike; Scott, J Anthony G; (2005) Invasive Gram-negative bacilli are frequently resistant to standard antibiotics for children admitted to hospital in Kilifi, Kenya. The Journal of antimicrobial chemotherapy, 56 (1). pp. 232-235. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dki145 Full text not available from this repository.

Bennett, Julia C; Deloria Knoll, Maria; Kagucia, Eunice W; Garcia Quesada, Maria; Zeger, Scott L; Hetrich, Marissa K; Yang, Yangyupei; Herbert, Carly; Ogyu, Anju; Cohen, Adam L; +58 more... Yildirim, Inci; Winje, Brita A; von Gottberg, Anne; Viriot, Delphine; van der Linden, Mark; Valentiner-Branth, Palle; Suga, Shigeru; Steens, Anneke; Skoczynska, Anna; Sinkovec Zorko, Nadja; Scott, J Anthony; Savulescu, Camelia; Savrasova, Larisa; Sanz, Juan Carlos; Russell, Fiona; Ricketson, Leah J; Puentes, Rodrigo; Nuorti, J Pekka; Mereckiene, Jolita; McMahon, Kimberley; McGeer, Allison; Mad'arová, Lucia; Mackenzie, Grant A; MacDonald, Laura; Lepp, Tiia; Ladhani, Shamez N; Kristinsson, Karl G; Kozakova, Jana; Klein, Nicola P; Jayasinghe, Sanjay; Ho, Pak-Leung; Hilty, Markus; Heyderman, Robert S; Hasanuzzaman, Md; Hammitt, Laura L; Guevara, Marcela; Grgic-Vitek, Marta; Gierke, Ryan; Georgakopoulou, Theano; Galloway, Yvonne; Diawara, Idrissa; Desmet, Stefanie; De Wals, Philippe; Dagan, Ron; Colzani, Edoardo; Cohen, Cheryl; Ciruela, Pilar; Chuluunbat, Urtnasan; Chan, Guanhao; Camilli, Romina; Bruce, Michael G; Brandileone, Maria-Cristina C; Bigogo, Godfrey; Ampofo, Krow; O'Brien, Katherine L; Feikin, Daniel R; Hayford, Kyla; PSERENADE Team; (2024) Global impact of ten-valent and 13-valent pneumococcal conjugate vaccines on invasive pneumococcal disease in all ages (the PSERENADE project): a global surveillance analysis. The Lancet. Infectious diseases. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(24)00665-0

Bennett, Julia C; Hetrich, Marissa K; Garcia Quesada, Maria; Sinkevitch, Jenna N; Deloria Knoll, Maria; Feikin, Daniel R; Zeger, Scott L; Kagucia, Eunice W; Cohen, Adam L; Ampofo, Krow; +52 more... Brandileone, Maria-Cristina C; Bruden, Dana; Camilli, Romina; Castilla, Jesús; Chan, Guanhao; Cook, Heather; Cornick, Jennifer E; Dagan, Ron; Dalby, Tine; Danis, Kostas; de Miguel, Sara; De Wals, Philippe; Desmet, Stefanie; Georgakopoulou, Theano; Gilkison, Charlotte; Grgic-Vitek, Marta; Hammitt, Laura L; Hilty, Markus; Ho, Pak-Leung; Jayasinghe, Sanjay; Kellner, James D; Kleynhans, Jackie; Knol, Mirjam J; Kozakova, Jana; Kristinsson, Karl G; Ladhani, Shamez N; MacDonald, Laura; Mackenzie, Grant A; Mad'arová, Lucia; McGeer, Allison; Mereckiene, Jolita; Morfeldt, Eva; Mungun, Tuya; Muñoz-Almagro, Carmen; Nuorti, J Pekka; Paragi, Metka; Pilishvili, Tamara; Puentes, Rodrigo; Saha, Samir K; Sahu Khan, Aalisha; Savrasova, Larisa; Scott, J Anthony; Skoczyńska, Anna; Suga, Shigeru; van der Linden, Mark; Verani, Jennifer R; von Gottberg, Anne; Winje, Brita A; Yildirim, Inci; Zerouali, Khalid; Hayford, Kyla; The Pserenade Team; (2021) Changes in Invasive Pneumococcal Disease Caused by Streptococcus pneumoniae Serotype 1 Following Introduction of PCV10 and PCV13: Findings from the PSERENADE Project. Microorganisms, 9 (4). p. 696. DOI: https://doi.org/10.3390/microorganisms9040696

Berkley, James A; Lowe, Brett S; Mwangi, Isaiah; Williams, Thomas; Bauni, Evasius; Mwarumba, Saleem; Ngetsa, Caroline; Slack, Mary PE; Njenga, Sally; Hart, C Anthony; +4 more... Maitland, Kathryn; English, Mike; Marsh, Kevin; Scott, J Anthony G; (2005) Bacteremia among children admitted to a rural hospital in Kenya. The New England journal of medicine, 352 (1). pp. 39-47. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa040275

Berkley, James A; Maitland, Kathryn; Mwangi, Isaiah; Ngetsa, Caroline; Mwarumba, Saleem; Lowe, Brett S; Newton, Charles RJC; Marsh, Kevin; Scott, J Anthony G; English, Mike; (2005) Use of clinical syndromes to target antibiotic prescribing in seriously ill children in malaria endemic area: observational study. BMJ (Clinical research ed), 330 (7498). 995-. ISSN 0959-8138 DOI: https://doi.org/10.1136/bmj.38408.471991.8F

Berkley, James A; Munywoki, Patrick; Ngama, Mwanajuma; Kazungu, Sidi; Abwao, John; Bett, Anne; Lassauniére, Ria; Kresfelder, Tina; Cane, Patricia A; Venter, Marietjie; +2 more... Scott, J Anthony G; Nokes, D James; (2010) Viral etiology of severe pneumonia among Kenyan infants and children. JAMA, 303 (20). pp. 2051-2057. ISSN 0098-7484 DOI: https://doi.org/10.1001/jama.2010.675 Full text not available from this repository.

Blau, Dianna M; Baillie, Vicky L; Els, Toyah; Mahtab, Sana; Mutevedzi, Portia; Keita, Adama Mamby; Kotloff, Karen L; Mehta, Ashka; Sow, Samba O; Tapia, Milagritos D; +31 more... Tippett Barr, Beth A; Oluoch, Benard O; Onyango, Clayton; Revathi, Gunturu; Verani, Jennifer R; Abayneh, Mahlet; Assefa, Nega; Madrid, Lola; Oundo, Joseph O; Scott, J Anthony G; Bassat, Quique; Mandomando, Inacio; Sitoe, Antonio; Valente, Marta; Varo, Rosauro; Bassey, Ima-Abasi; Cain, Carrie Jo; Jambai, Amara; Ogbuanu, Ikechukwu; Ojulong, Julius; Alam, Muntasir; El Arifeen, Shams; Gurley, Emily S; Rahman, Afruna; Rahman, Mustafizur; Waller, Jessica L; Dewey, Betsy; Breiman, Robert F; Whitney, Cynthia G; Madhi, Shabir A; CHAMPS Consortium; (2021) Deaths Attributed to Respiratory Syncytial Virus in Young Children in High-Mortality Rate Settings: Report from Child Health and Mortality Prevention Surveillance (CHAMPS). Clinical infectious diseases, 73 (Suppl_). S218-S228. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab509

Bottomley, C; Otiende, M; Uyoga, S; Gallagher, K; Kagucia, EW; Etyang, AO; Mugo, D; Gitonga, J; Karanja, H; Nyagwange, J; +5 more... Adetifa, IMO; Agweyu, A; Nokes, DJ; Warimwe, GM; Scott, JAG; (2021) Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. Nature communications, 12 (1). 6196-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-021-26452-z

Bottomley, Christian; Scott, J Anthony G; Isham, Valerie; (2019) Analysing Interrupted Time Series with a Control. Epidemiologic Methods, 8 (1). ISSN 2161-962X DOI: https://doi.org/10.1515/em-2018-0010

Brand, Samuel PC; Ojal, John; Aziza, Rabia; Were, Vincent; Okiro, Emelda A; Kombe, Ivy K; Mburu, Caroline; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M; +23 more... Nyagwange, James; Karanja, Henry; Gitonga, John N; Mugo, Daisy; Uyoga, Sophie; Adetifa, Ifedayo MO; Scott, J Anthony G; Otieno, Edward; Murunga, Nickson; Otiende, Mark; Ochola-Oyier, Lynette I; Agoti, Charles N; Githinji, George; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng'ang'a, Wangari; Tsofa, Benjamin; Bejon, Philip; Keeling, Matt J; Nokes, D James; Barasa, Edwine; (2021) COVID-19 transmission dynamics underlying epidemic waves in Kenya. Science (New York, N.Y.), 374 (6570). pp. 989-994. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abk0414

Breiman, Robert F; Blau, Dianna M; Mutevedzi, Portia; Akelo, Victor; Mandomando, Inacio; Ogbuanu, Ikechukwu U; Sow, Samba O; Madrid, Lola; El Arifeen, Shams; Garel, Mischka; +30 more... Thwala, Nana Bukiwe; Onyango, Dickens; Sitoe, Antonio; Bassey, Ima-Abasi; Keita, Adama Mamby; Alemu, Addisu; Alam, Muntasir; Mahtab, Sana; Gethi, Dickson; Varo, Rosauro; Ojulong, Julius; Samura, Solomon; Mehta, Ashka; Ibrahim, Alexander M; Rahman, Afruna; Vitorino, Pio; Baillie, Vicky L; Agaya, Janet; Tapia, Milagritos D; Assefa, Nega; Chowdhury, Atique Iqbal; Scott, J Anthony G; Gurley, Emily S; Kotloff, Karen L; Jambai, Amara; Bassat, Quique; Tippett-Barr, Beth A; Madhi, Shabir A; Whitney, Cynthia G; CHAMPS Consortium; CHAMPS Consortium; (2021) Postmortem investigations and identification of multiple causes of child deaths: An analysis of findings from the Child Health and Mortality Prevention Surveillance (CHAMPS) network. PLoS medicine, 18 (9). e1003814-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1003814

Brent, AJ; Ahmed, I; Ndiritu, M; Lewa, P; Ngetsa, C; Lowe, B; Bauni, E; English, M; Berkley, JA; Scott, JAG; (2006) Incidence of clinically significant bacteraemia in children who present to hospital in Kenya: community-based observational study. Lancet, 367 (9509). pp. 482-488. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(06)68180-4 Full text not available from this repository.

Brent, Andrew J; Mugo, Daisy; Musyimi, Robert; Mutiso, Agnes; Morpeth, Susan C; Levin, Michael; Scott, J Anthony G; (2017) Bacteriological diagnosis of childhood TB: a prospective observational study. Scientific reports, 7 (1). 11808-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-11969-5

Brent, Andrew J; Mugo, Daisy; Musyimi, Robert; Mutiso, Agnes; Morpeth, Susan; Levin, Michael; Scott, J Anthony G; (2011) Performance of the MGIT TBc identification test and meta-analysis of MPT64 assays for identification of the Mycobacterium tuberculosis complex in liquid culture. Journal of clinical microbiology, 49 (12). pp. 4343-4346. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.05995-11 Full text not available from this repository.

Brent, Andrew J; Nyundo, Christopher; Langat, Joyce; Mulunda, Caroline; Wambua, Joshua; Bauni, Evasius; Sande, Joyce; Park, Kate; Williams, Thomas N; Newton, Charles RJ; +3 more... Levin, Michael; Scott, J Anthony G; KIDS TB Study Group; (2018) Prospective Observational Study of Incidence and Preventable Burden of Childhood Tuberculosis, Kenya. Emerging infectious diseases, 24 (3). pp. 514-523. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2403.170785

Brueggemann, Angela B; Muroki, Beth Mbesu; Kulohoma, Benard W; Karani, Angela; Wanjiru, Eva; Morpeth, Susan; Kamau, Tatu; Sharif, Shahnaaz; Scott, J Anthony G; (2013) Population genetic structure of Streptococcus pneumoniae in Kilifi, Kenya, prior to the introduction of pneumococcal conjugate vaccine. PloS one, 8 (11). e81539-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0081539

Burton, Deron C; Bigogo, Godfrey M; Audi, Allan O; Williamson, John; Munge, Kenneth; Wafula, Jackline; Ouma, Dominic; Khagayi, Sammy; Mugoya, Isaac; Mburu, James; +16 more... Muema, Shadrack; Bauni, Evasius; Bwanaali, Tahreni; Feikin, Daniel R; Ochieng, Peter M; Mogeni, Ondari D; Otieno, George A; Olack, Beatrice; Kamau, Tatu; Van Dyke, Melissa K; Chen, Robert; Farrington, Paddy; Montgomery, Joel M; Breiman, Robert F; Scott, J Anthony G; Laserson, Kayla F; (2015) Risk of Injection-Site Abscess among Infants Receiving a Preservative-Free, Two-Dose Vial Formulation of Pneumococcal Conjugate Vaccine in Kenya. PloS one, 10 (10). e0141896-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0141896

Chapman, SJ; Khor, CC; Vannberg, FO; Rautanen, A; Segal, S; Moore, CE; Davies, RJO; Day, NP; Peshu, N; Crook, DW; +4 more... Berkley, JA; Williams, TN; Scott, JA; Hill, AVS; (2010) NFKBIZ polymorphisms and susceptibility to pneumococcal disease in European and African populations. Genes and immunity, 11 (4). pp. 319-325. ISSN 1466-4879 DOI: https://doi.org/10.1038/gene.2009.76 Full text not available from this repository.

Chapman, Stephen J; Khor, Chiea C; Vannberg, Fredrik O; Rautanen, Anna; Walley, Andrew; Segal, Shelley; Moore, Catrin E; Davies, Robert JO; Day, Nicholas P; Peshu, Norbert; +5 more... Crook, Derrick W; Berkley, James A; Williams, Thomas N; Scott, J Anthony; Hill, Adrian VS; (2010) Common NFKBIL2 polymorphisms and susceptibility to pneumococcal disease: a genetic association study. Critical care (London, England), 14 (6). R227-. ISSN 1364-8535 DOI: https://doi.org/10.1186/cc9377

Chen, Cynthia; Ang, Gregory; Akksilp, Katika; Koh, Jemima; Scott, J Anthony G; Clark, Andrew; Jit, Mark; (2024) Re-evaluating the impact and cost-effectiveness of pneumococcal conjugate vaccine introduction in 112 low-income and middle-income countries in children younger than 5 years: a modelling study. The Lancet. Global health, 12 (9). e1485-e1497. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(24)00232-8

Cowgill, Karen D; Ndiritu, Moses; Nyiro, Joyce; Slack, Mary PE; Chiphatsi, Salome; Ismail, Amina; Kamau, Tatu; Mwangi, Isaiah; English, Mike; Newton, Charles RJC; +2 more... Feikin, Daniel R; Scott, J Anthony G; (2006) Effectiveness of Haemophilus influenzae type b Conjugate vaccine introduction into routine childhood immunization in Kenya. JAMA, 296 (6). pp. 671-678. ISSN 0098-7484 DOI: https://doi.org/10.1001/jama.296.6.671

Crawley, Jane; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; +25 more... Murdoch, David R; O'Brien, Katherine L; Thea, Donald M; Awori, Juliet O; Bunthi, Charatdao; DeLuca, Andrea N; Driscoll, Amanda J; Ebruke, Bernard E; Goswami, Doli; Hidgon, Melissa M; Karron, Ruth A; Kazungu, Sidi; Kourouma, Nana; Mackenzie, Grant; Moore, David P; Mudau, Azwifari; Mwale, Magdalene; Nahar, Kamrun; Park, Daniel E; Piralam, Barameht; Seidenberg, Phil; Sylla, Mamadou; Feikin, Daniel R; Scott, J Anthony G; PERCH Study Group; (2017) Standardization of Clinical Assessment and Sample Collection Across All PERCH Study Sites. Clinical infectious diseases, 64 (suppl_). S228-S237. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix077

DeLuca, Andrea N; Hammitt, Laura L; Kim, Julia; Higdon, Melissa M; Baggett, Henry C; Brooks, W Abdullah; Howie, Stephen RC; Deloria Knoll, Maria; Kotloff, Karen L; Levine, Orin S; +24 more... Madhi, Shabir A; Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Amornintapichet, Tussanee; Awori, Juliet O; Chuananon, Somchai; Driscoll, Amanda J; Ebruke, Bernard E; Hossain, Lokman; Jahan, Yasmin; Kagucia, E Wangeci; Kazungu, Sidi; Moore, David P; Mudau, Azwifarwi; Mwananyanda, Lawrence; Park, Daniel E; Prosperi, Christine; Seidenberg, Phil; Sylla, Mamadou; Tapia, Milagritos D; Zaman, Syed MA; O'Brien, Katherine L; PERCH Study Group; (2017) Safety of Induced Sputum Collection in Children Hospitalized With Severe or Very Severe Pneumonia. Clinical infectious diseases, 64 (suppl_). S301-S308. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix078

Deloria Knoll, Maria; Bennett, Julia C; Garcia Quesada, Maria; Kagucia, Eunice W; Peterson, Meagan E; Feikin, Daniel R; Cohen, Adam L; Hetrich, Marissa K; Yang, Yangyupei; Sinkevitch, Jenna N; +63 more... Ampofo, Krow; Aukes, Laurie; Bacci, Sabrina; Bigogo, Godfrey; Brandileone, Maria-Cristina C; Bruce, Michael G; Camilli, Romina; Castilla, Jesús; Chan, Guanhao; Chanto Chacón, Grettel; Ciruela, Pilar; Cook, Heather; Corcoran, Mary; Dagan, Ron; Danis, Kostas; de Miguel, Sara; De Wals, Philippe; Desmet, Stefanie; Galloway, Yvonne; Georgakopoulou, Theano; Hammitt, Laura L; Hilty, Markus; Ho, Pak-Leung; Jayasinghe, Sanjay; Kellner, James D; Kleynhans, Jackie; Knol, Mirjam J; Kozakova, Jana; Kristinsson, Karl Gústaf; Ladhani, Shamez N; Lara, Claudia S; León, Maria Eugenia; Lepp, Tiia; Mackenzie, Grant A; Mad'arová, Lucia; McGeer, Allison; Mungun, Tuya; Mwenda, Jason M; Nuorti, J Pekka; Nzoyikorera, Néhémie; Oishi, Kazunori; De Oliveira, Lucia Helena; Paragi, Metka; Pilishvili, Tamara; Puentes, Rodrigo; Rafai, Eric; Saha, Samir K; Savrasova, Larisa; Savulescu, Camelia; Scott, J Anthony; Scott, Kevin J; Serhan, Fatima; Setchanova, Lena Petrova; Sinkovec Zorko, Nadja; Skoczyńska, Anna; Swarthout, Todd D; Valentiner-Branth, Palle; van der Linden, Mark; Vestrheim, Didrik F; von Gottberg, Anne; Yildirim, Inci; Hayford, Kyla; The Pserenade Team; (2021) Global Landscape Review of Serotype-Specific Invasive Pneumococcal Disease Surveillance among Countries Using PCV10/13: The Pneumococcal Serotype Replacement and Distribution Estimation (PSERENADE) Project. Microorganisms, 9 (4). p. 742. ISSN 2076-2607 DOI: https://doi.org/10.3390/microorganisms9040742

Deloria Knoll, Maria; Fu, Wei; Shi, Qiyuan; Prosperi, Christine; Wu, Zhenke; Hammitt, Laura L; Feikin, Daniel R; Baggett, Henry C; Howie, Stephen RC; Scott, J Anthony G; +11 more... Murdoch, David R; Madhi, Shabir A; Thea, Donald M; Brooks, W Abdullah; Kotloff, Karen L; Li, Mengying; Park, Daniel E; Lin, Wenyi; Levine, Orin S; O'Brien, Katherine L; Zeger, Scott L; (2017) Bayesian Estimation of Pneumonia Etiology: Epidemiologic Considerations and Applications to the Pneumonia Etiology Research for Child Health Study. Clinical infectious diseases, 64 (suppl_). S213-S227. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix144

Deloria Knoll, Maria; Morpeth, Susan C; Scott, J Anthony G; Watson, Nora L; Park, Daniel E; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; +28 more... Kotloff, Karen L; Levine, Orin S; O'Brien, Katherine L; Thea, Donald M; Ahmed, Dilruba; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; Chipeta, James; Deluca, Andrea N; Dione, Michel; Driscoll, Amanda J; Higdon, Melissa M; Jatapai, Anchalee; Karron, Ruth A; Mazumder, Razib; Moore, David P; Mwansa, James; Nyongesa, Sammy; Prosperi, Christine; Seidenberg, Phil; Siludjai, Duangkamon; Sow, Samba O; Tamboura, Boubou; Zeger, Scott L; Murdoch, David R; Madhi, Shabir A; PERCH Study Group; (2017) Evaluation of Pneumococcal Load in Blood by Polymerase Chain Reaction for the Diagnosis of Pneumococcal Pneumonia in Young Children in the PERCH Study. Clinical infectious diseases, 64 (suppl_). S357-S367. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix149

Deloria Knoll, Maria; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Madhi, Shabir A; Murdoch, David R; +3 more... Scott, J Anthony G; Thea, Donald M; O'Brien, Katherine L; (2021) Introduction to the Site-specific Etiologic Results From the Pneumonia Etiology Research for Child Health (PERCH) Study. The Pediatric infectious disease journal, 40 (9S). S1-S6. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000002778

Deloria-Knoll, Maria; Feikin, Daniel R; Scott, J Anthony G; O'Brien, Katherine L; DeLuca, Andrea N; Driscoll, Amanda J; Levine, Orin S; Pneumonia Methods Working Group; (2012) Identification and selection of cases and controls in the Pneumonia Etiology Research for Child Health project. Clinical infectious diseases, 54 Sup (Suppl ). S117-S123. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1066

Dramowski, Angela; Aiken, Alexander M; Rehman, Andrea M; Snyman, Yolandi; Reuter, Sandra; Grundmann, Hajo; Scott, J Anthony G; de Kraker, Marlieke EA; Whitelaw, Andrew; (2022) Mortality associated with third-generation cephalosporin resistance in Enterobacteriaceae bloodstream infections at one South African hospital. Journal of Global Antimicrobial Resistance, 29. pp. 176-184. ISSN 2213-7165 DOI: https://doi.org/10.1016/j.jgar.2022.03.001

Dramowski, Angela; Ong'ayo, Gerald; Rehman, Andrea M; Whitelaw, Andrew; Labi, Appiah-Korang; Obeng-Nkrumah, Noah; Ndir, Awa; Magwenzi, Marcelyn T; Onyedibe, Kenneth; Wolkewitz, Martin; +4 more... de Kraker, Marlieke EA; Scott, J Anthony G; Aiken, Alexander M; MBIRA study collaborators; (2021) Mortality attributable to third-generation cephalosporin resistance in Gram-negative bloodstream infections in African hospitals: a multi-site retrospective study. JAC-Antimicrobial Resistance, 3 (1). dlaa130-. DOI: https://doi.org/10.1093/jacamr/dlaa130

Dramowski, Angela; Ong’ayo, Gerald; Rehman, Andrea M; Whitelaw, Andrew; Labi, Appiah-Korang; Obeng-Nkrumah, Noah; Ndir, Awa; Magwenzi, Marcelyn T; Onyedibe, Kenneth; Wolkewitz, Martin; +3 more... de Kraker, Marlieke EA; Scott, J Anthony G; Aiken, Alexander M; (2021) Erratum to: Mortality attributable to third-generation cephalosporin resistance in Gram-negative bloodstream infections in African hospitals: a multi-site retrospective study. JAC-Antimicrobial Resistance, 3 (1). DOI: https://doi.org/10.1093/jacamr/dlab037

Driscoll, Amanda J; Deloria Knoll, Maria; Hammitt, Laura L; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; +26 more... Scott, J Anthony G; Thea, Donald M; Howie, Stephen RC; Adrian, Peter V; Ahmed, Dilruba; DeLuca, Andrea N; Ebruke, Bernard E; Gitahi, Caroline; Higdon, Melissa M; Kaewpan, Anek; Karani, Angela; Karron, Ruth A; Mazumder, Razib; McLellan, Jessica; Moore, David P; Mwananyanda, Lawrence; Park, Daniel E; Prosperi, Christine; Rhodes, Julia; Saifullah, Md; Seidenberg, Phil; Sow, Samba O; Tamboura, Boubou; Zeger, Scott L; Murdoch, David R; PERCH Study Group; (2017) The Effect of Antibiotic Exposure and Specimen Volume on the Detection of Bacterial Pathogens in Children With Pneumonia. Clinical infectious diseases, 64 (suppl_). S368-S377. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix101

Driscoll, Amanda J; Karron, Ruth A; Morpeth, Susan C; Bhat, Niranjan; Levine, Orin S; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; +33 more... Knoll, Maria Deloria; Kotloff, Karen L; Madhi, Shabir A; Scott, J Anthony G; Thea, Donald M; Adrian, Peter V; Ahmed, Dilruba; Alam, Muntasir; Anderson, Trevor P; Antonio, Martin; Baillie, Vicky L; Dione, Michel; Endtz, Hubert P; Gitahi, Caroline; Karani, Angela; Kwenda, Geoffrey; Maiga, Abdoul Aziz; McClellan, Jessica; Mitchell, Joanne L; Morailane, Palesa; Mugo, Daisy; Mwaba, John; Mwansa, James; Mwarumba, Salim; Nyongesa, Sammy; Panchalingam, Sandra; Rahman, Mustafizur; Sawatwong, Pongpun; Tamboura, Boubou; Toure, Aliou; Whistler, Toni; O'Brien, Katherine L; Murdoch, David R; (2017) Standardization of Laboratory Methods for the PERCH Study. Clinical infectious diseases, 64 (suppl_). S245-S252. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix081

Ebruke, Bernard E; Deloria Knoll, Maria; Haddix, Meredith; Zaman, Syed MA; Prosperi, Christine; Feikin, Daniel R; Hammitt, Laura L; Levine, Orin S; O'Brien, Katherine L; Murdoch, David R; +22 more... Brooks, W Abdullah; Scott, J Anthony G; Kotloff, Karen L; Madhi, Shabir A; Thea, Donald M; Baillie, Vicky L; Chisti, Mohammod Jobayer; Dione, Michel; Driscoll, Amanda J; Fancourt, Nicholas; Karron, Ruth A; Le, Tham T; Mohamed, Shebe; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwansa, James; Bin Shahid, Abu Sadat Mohammad Sayeem; Sow, Samba O; Tapia, Milagritos D; Antonio, Martin; Howie, Stephen RC; (2020) The Etiology of Pneumonia From Analysis of Lung Aspirate and Pleural Fluid Samples: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 73 (11). e3788-e3796. ISSN 1537-6591 DOI: https://doi.org/10.1093/cid/ciaa1032

Edwards, Tansy; Scott, Anthony G; Munyoki, Gilbert; Odera, Victor Mung'ala; Chengo, Edward; Bauni, Evasius; Kwasa, Thomas; Sander, Ley W; Neville, Brian G; Newton, Charles R; (2007) Active convulsive epilepsy in a rural district of Kenya: a study of prevalence and possible risk factors. Lancet neurology, 7 (1). pp. 50-56. ISSN 1474-4422 DOI: https://doi.org/10.1016/S1474-4422(07)70292-2 Full text not available from this repository.

English, Mike; Scott, J Anthony G; (2008) What is the future for global case management guidelines for common childhood diseases? PLoS medicine, 5 (12). e241-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.0050241

Etyang, AO; Smeeth, L; Cruickshank, JK; Scott, JA; (2016) The Malaria-High Blood Pressure Hypothesis. Circulation research, 119 (1). pp. 36-40. ISSN 0009-7330 DOI: https://doi.org/10.1161/CIRCRESAHA.116.308763

Etyang, Anthony O; Adetifa, Ifedayo; Omore, Richard; Misore, Thomas; Ziraba, Abdhalah K; Ng'oda, Maurine A; Gitau, Evelyn; Gitonga, John; Mugo, Daisy; Kutima, Bernadette; +32 more... Karanja, Henry; Toroitich, Monica; Nyagwange, James; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; Amoth, Patrick; Mwangangi, Mercy; Kasera, Kadondi; Ng'ang'a, Wangari; Akech, Donald; Sigilai, Antipa; Karia, Boniface; Karani, Angela; Voller, Shirine; Agoti, Charles N; Ochola-Oyier, Lynette I; Otiende, Mark; Bottomley, Christian; Nyaguara, Amek; Uyoga, Sophie; Gallagher, Katherine; Kagucia, Eunice W; Onyango, Dickens; Tsofa, Benjamin; Mwangangi, Joseph; Maitha, Eric; Barasa, Edwine; Bejon, Philip; Warimwe, George M; Scott, J Anthony G; Agweyu, Ambrose; (2022) SARS-CoV-2 seroprevalence in three Kenyan health and demographic surveillance sites, December 2020-May 2021. PLOS Global Public Health, 2 (8). e0000883-. ISSN 2767-3375 DOI: https://doi.org/10.1371/journal.pgph.0000883

Etyang, Anthony O; Kapesa, Sailoki; Odipo, Emily; Bauni, Evasius; Kyobutungi, Catherine; Abdalla, Marwah; Muntner, Paul; Musani, Solomon K; Macharia, Alex; Williams, Thomas N; +3 more... Cruickshank, J Kennedy; Smeeth, Liam; Scott, J Anthony G; (2019) Effect of Previous Exposure to Malaria on Blood Pressure in Kilifi, Kenya: A Mendelian Randomization Study. Journal of the American Heart Association, 8 (6). e011771-. ISSN 2047-9980 DOI: https://doi.org/10.1161/JAHA.118.011771

Etyang, Anthony O; Khayeka-Wandabwa, Christopher; Kapesa, Sailoki; Muthumbi, Esther; Odipo, Emily; Wamukoya, Marylene; Ngomi, Nicholas; Haregu, Tilahun; Kyobutungi, Catherine; Tendwa, Metrine; +6 more... Makale, Johnstone; Macharia, Alex; Cruickshank, J Kennedy; Smeeth, Liam; Scott, J Anthony G; Williams, Thomas N; (2017) Blood Pressure and Arterial Stiffness in Kenyan Adolescents With α+Thalassemia. Journal of the American Heart Association, 6 (4). ISSN 2047-9980 DOI: https://doi.org/10.1161/JAHA.117.005613

Etyang, Anthony O; Lucinde, Ruth; Karanja, Henry; Kalu, Catherine; Mugo, Daisy; Nyagwange, James; Gitonga, John; Tuju, James; Wanjiku, Perpetual; Karani, Angela; +40 more... Mutua, Shadrack; Maroko, Hosea; Nzomo, Eddy; Maitha, Eric; Kamuri, Evanson; Kaugiria, Thuranira; Weru, Justus; Ochola, Lucy B; Kilimo, Nelson; Charo, Sande; Emukule, Namdala; Moracha, Wycliffe; Mukabi, David; Okuku, Rosemary; Ogutu, Monicah; Angujo, Barrack; Otiende, Mark; Bottomley, Christian; Otieno, Edward; Ndwiga, Leonard; Nyaguara, Amek; Voller, Shirine; Agoti, Charles N; Nokes, David James; Ochola-Oyier, Lynette Isabella; Aman, Rashid; Amoth, Patrick; Mwangangi, Mercy; Kasera, Kadondi; Ng'ang'a, Wangari; Adetifa, Ifedayo MO; Wangeci Kagucia, E; Gallagher, Katherine; Uyoga, Sophie; Tsofa, Benjamin; Barasa, Edwine; Bejon, Philip; Scott, J Anthony G; Agweyu, Ambrose; Warimwe, George M; (2021) Seroprevalence of Antibodies to Severe Acute Respiratory Syndrome Coronavirus 2 Among Healthcare Workers in Kenya. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 74 (2). pp. 288-293. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab346

Etyang, Anthony O; Munge, Kenneth; Bunyasi, Erick W; Matata, Lena; Ndila, Carolyne; Kapesa, Sailoki; Owiti, Maureen; Khandwalla, Iqbal; Brent, Andrew J; Tsofa, Benjamin; +11 more... Kabibu, Pamela; Morpeth, Susan; Bauni, Evasius; Otiende, Mark; Ojal, John; Ayieko, Philip; Knoll, Maria D; Smeeth, Liam; Williams, Thomas N; Griffiths, Ulla K; Scott, J Anthony G; (2014) Burden of disease in adults admitted to hospital in a rural region of coastal Kenya: an analysis of data from linked clinical and demographic surveillance systems. The Lancet Global health, 2 (4). e216-e224. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(14)70023-3

Etyang, Anthony O; Scott, John Anthony Gerard; (2013) Medical causes of admissions to hospital among adults in Africa: a systematic review. Global health action, 6 (1). pp. 1-14. ISSN 1654-9716 DOI: https://doi.org/10.3402/gha.v6i0.19090

Etyang, Anthony O; Wandabwa, Christopher K; Kapesa, Sailoki; Muthumbi, Esther; Odipo, Emily; Wamukoya, Marylene; Ngomi, Nicholas; Haregu, Tilahun; Kyobutungi, Catherine; Williams, Thomas N; +5 more... Makale, Johnstone; Macharia, Alex; Cruickshank, J Kennedy; Smeeth, Liam; Scott, J Anthony G; (2017) Blood Pressure and Arterial Stiffness in Kenyan Adolescents With the Sickle Cell Trait. American journal of epidemiology, 187 (2). pp. 199-205. ISSN 0002-9262 DOI: https://doi.org/10.1093/aje/kwx232

Etyang, Anthony O; Warne, Ben; Kapesa, Sailoki; Munge, Kenneth; Bauni, Evasius; Cruickshank, J Kennedy; Smeeth, Liam; Scott, J Anthony G; (2016) Clinical and Epidemiological Implications of 24-Hour Ambulatory Blood Pressure Monitoring for the Diagnosis of Hypertension in Kenyan Adults: A Population-Based Study. Journal of the American Heart Association, 5 (12). ISSN 2047-9980 DOI: https://doi.org/10.1161/JAHA.116.004797

Fancourt, Nicholas; Deloria Knoll, Maria; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; +26 more... Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Awori, Juliet O; Barger-Kamate, Breanna; Chipeta, James; DeLuca, Andrea N; Diallo, Mahamadou; Driscoll, Amanda J; Ebruke, Bernard E; Higdon, Melissa M; Jahan, Yasmin; Karron, Ruth A; Mahomed, Nasreen; Moore, David P; Nahar, Kamrun; Naorat, Sathapana; Ominde, Micah Silaba; Park, Daniel E; Prosperi, Christine; Wa Somwe, Somwe; Thamthitiwat, Somsak; Zaman, Syed MA; Zeger, Scott L; O'Brien, Katherine L; PERCH Study Group; (2017) Chest Radiograph Findings in Childhood Pneumonia Cases From the Multisite PERCH Study. Clinical infectious diseases, 64 (suppl_). S262-S270. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix089

Feazel, Leah M; Santorico, Stephanie A; Robertson, Charles E; Bashraheil, Mahfudh; Scott, J Anthony G; Frank, Daniel N; Hammitt, Laura L; (2015) Effects of Vaccination with 10-Valent Pneumococcal Non-Typeable Haemophilus influenza Protein D Conjugate Vaccine (PHiD-CV) on the Nasopharyngeal Microbiome of Kenyan Toddlers. PloS one, 10 (6). e0128064-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0128064

Feikin, Daniel R; Fu, Wei; Park, Daniel E; Shi, Qiyuan; Higdon, Melissa M; Baggett, Henry C; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Howie, Stephen RC; +28 more... Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Scott, J Anthony G; Thea, Donald M; Adrian, Peter V; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Ebruke, Bernard E; Goswami, Doli; Karron, Ruth A; Li, Mengying; Morpeth, Susan C; Mwaba, John; Mwansa, James; Prosperi, Christine; Sawatwong, Pongpun; Sow, Samba O; Tapia, Milagritos D; Whistler, Toni; Zaman, Khalequ; Zeger, Scott L; O' Brien, Katherine L; Murdoch, David R; PERCH Study Group; (2017) Is Higher Viral Load in the Upper Respiratory Tract Associated With Severe Pneumonia? Findings From the PERCH Study. Clinical infectious diseases, 64 (suppl_). S337-S346. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix148

Feikin, Daniel R; Hammitt, Laura L; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; (2017) The Enduring Challenge of Determining Pneumonia Etiology in Children: Considerations for Future Research Priorities. Clinical infectious diseases, 64 (suppl_). S188-S196. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix143

Feikin, Daniel R; Scott, J Anthony G; Gessner, Bradford D; (2014) Use of vaccines as probes to define disease burden. Lancet, 383 (9930). pp. 1762-1770. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(13)61682-7 Full text not available from this repository.

Fernandes, Silke; Jit, Mark; Bozzani, Fiammetta; Griffiths, Ulla K; Scott, J Anthony G; Burchett, Helen ED; (2018) A bibliometric analysis of systematic reviews on vaccines and immunisation. Vaccine, 36 (17). pp. 2254-2261. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2018.02.049

Flasche, Stefan; Ojal, John; Le Polain de Waroux, Olivier; Otiende, Mark; O'Brien, Katherine L; Kiti, Moses; Nokes, D James; Edmunds, W John; Scott, J Anthony G; (2017) Assessing the efficiency of catch-up campaigns for the introduction of pneumococcal conjugate vaccine: a modelling study based on data from PCV10 introduction in Kilifi, Kenya. BMC medicine, 15 (1). 113-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-017-0882-9

Flasche, Stefan; Van Hoek, Albert Jan; Goldblatt, David; Edmunds, W John; O'Brien, Katherine L; Scott, J Anthony G; Miller, Elizabeth; (2015) The Potential for Reducing the Number of Pneumococcal Conjugate Vaccine Doses While Sustaining Herd Immunity in High-Income Countries. PLoS medicine, 12 (6). e1001839-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1001839

Gallagher, Katherine E; Adetifa, Ifedayo MO; Mburu, Caroline; Bottomley, Christian; Akech, Donald; Karani, Angela; Pearce, Emma; Wang, Yanyun; Kagucia, E Wangeci; Goldblatt, David; +2 more... Hammitt, Laura L; Scott, J Anthony G; (2023) Population immunity to pneumococcal serotypes in Kilifi, Kenya, before and 6 years after the introduction of PCV10 with a catch-up campaign: an observational study of cross-sectional serosurveys. The Lancet Infectious diseases, 23 (11). pp. 1291-1301. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(23)00206-2

Gallagher, Katherine E; Knoll, Maria D; Prosperi, Chrissy; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; +19 more... Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Thea, Donald M; Awori, Juliet O; Baillie, Vicky L; Ebruke, Bernard E; Goswami, Doli; Kamau, Alice; Maloney, Susan A; Moore, David P; Mwananyanda, Lawrence; Olutunde, Emmanuel O; Seidenberg, Phil; Sissoko, Seydou; Sylla, Mamadou; Thamthitiwat, Somsak; Zaman, Khalequ; Scott, J Anthony G; (2019) The Predictive Performance of a Pneumonia Severity Score in Human Immunodeficiency Virus-negative Children Presenting to Hospital in 7 Low- and Middle-income Countries. Clinical Infectious Diseases, 70 (6). pp. 1050-1057. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz350

Gallagher, Katherine E; Lucinde, Ruth; Bottomley, Christian; Kaniu, Mary; Suaad, Badaud; Mutahi, Mary; Mwalekwa, Laura; Ragab, Sarah; Twi-Yeboah, Louise; Berkley, James A; +11 more... Hamaluba, Mainga; Karani, Angela; Shangala, Jimmy; Otiende, Mark; Gardiner, Elizabeth; Mugo, Daisy; Smith, Peter G; Tabu, Collins; Were, Fred; Goldblatt, David; Scott, J Anthony G; (2024) Fractional Doses of Pneumococcal Conjugate Vaccine - A Noninferiority Trial. The New England journal of medicine, 391 (21). pp. 2003-2013. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa2314620 Item availability may be restricted.

Garcia Gomez, Elisa; Igunza, Kitiezo Aggrey; Madewell, Zachary J; Akelo, Victor; Onyango, Dickens; El Arifeen, Shams; Gurley, Emily S; Hossain, Mohammad Zahid; Chowdhury, Md Atique Iqbal; Islam, Kazi Munisul; +31 more... Assefa, Nega; Scott, J Anthony G; Madrid, Lola; Tilahun, Yenenesh; Orlien, Stian; Kotloff, Karen L; Tapia, Milagritos D; Keita, Adama Mamby; Mehta, Ashka; Magaço, Amilcar; Torres-Fernandez, David; Nhacolo, Ariel; Bassat, Quique; Mandomando, Inácio; Ogbuanu, Ikechukwu; Cain, Carrie Jo; Luke, Ronita; Kamara, Sorie IB; Legesse, Hailemariam; Madhi, Shabir; Dangor, Ziyaad; Mahtab, Sana; Wise, Amy; Adam, Yasmin; Whitney, Cynthia G; Mutevedzi, Portia C; Blau, Dianna M; Breiman, Robert F; Tippett Barr, Beth A; Rees, Chris A; Child Health and Mortality Prevention Surveillance Network; (2024) Identifying delays in healthcare seeking and provision: The Three Delays-in-Healthcare and mortality among infants and children aged 1-59 months. PLOS Global Public Health, 4 (2). e0002494-. DOI: https://doi.org/10.1371/journal.pgph.0002494

Garcia Quesada, Maria; Peterson, Meagan E; Bennett, Julia C; Hayford, Kyla; Zeger, Scott L; Yang, Yangyupei; Hetrich, Marissa K; Feikin, Daniel R; Cohen, Adam L; von Gottberg, Anne; +61 more... van der Linden, Mark; van Sorge, Nina M; de Oliveira, Lucia H; de Miguel, Sara; Yildirim, Inci; Vestrheim, Didrik F; Verani, Jennifer R; Varon, Emmanuelle; Valentiner-Branth, Palle; Tzanakaki, Georgina; Sinkovec Zorko, Nadja; Setchanova, Lena P; Serhan, Fatima; Scott, Kevin J; Scott, J Anthony; Savulescu, Camelia; Savrasova, Larisa; Reyburn, Rita; Oishi, Kazunori; Nuorti, J Pekka; Napoli, Daniela; Mwenda, Jason M; Muñoz-Almagro, Carmen; Morfeldt, Eva; McMahon, Kimberley; McGeer, Allison; Mad'arová, Lucia; Mackenzie, Grant A; Eugenia León, Maria; Ladhani, Shamez N; Kristinsson, Karl G; Kozakova, Jana; Kleynhans, Jackie; Klein, Nicola P; Kellner, James D; Jayasinghe, Sanjay; Ho, Pak-Leung; Hilty, Markus; Harker-Jones, Marcella A; Hammitt, Laura L; Grgic-Vitek, Marta; Gilkison, Charlotte; Gierke, Ryan; French, Neil; Diawara, Idrissa; Desmet, Stefanie; De Wals, Philippe; Dalby, Tine; Dagan, Ron; Corcoran, Mary; Colzani, Edoardo; Chanto Chacón, Grettel; Castilla, Jesús; Camilli, Romina; Ang, Michelle; Ampofo, Krow; Almeida, Samanta CG; Alarcon, Pedro; O'Brien, Katherine L; Deloria Knoll, Maria; PSERENADE Team; (2024) Serotype distribution of remaining invasive pneumococcal disease after extensive use of ten-valent and 13-valent pneumococcal conjugate vaccines (the PSERENADE project): a global surveillance analysis. The Lancet. Infectious diseases. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(24)00588-7

Gilani, Zunera; Kwong, Yuenting D; Levine, Orin S; Deloria-Knoll, Maria; Scott, J Anthony G; O'Brien, Katherine L; Feikin, Daniel R; (2012) A literature review and survey of childhood pneumonia etiology studies: 2000-2010. Clinical infectious diseases, 54 Sup (Suppl ). S102-S108. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1053

Gilchrist, James J; Kariuki, Silvia N; Watson, James A; Band, Gavin; Uyoga, Sophie; Ndila, Carolyne M; Mturi, Neema; Mwarumba, Salim; Mohammed, Shebe; Mosobo, Moses; +8 more... Alasoo, Kaur; Rockett, Kirk A; Mentzer, Alexander J; Kwiatkowski, Dominic P; Hill, Adrian VS; Maitland, Kathryn; Scott, J Anthony G; Williams, Thomas N; (2022) BIRC6 modifies risk of invasive bacterial infection in Kenyan children. eLife, 11 (11). e77461-. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.77461

Gilchrist, James J; Mentzer, Alexander J; Rautanen, Anna; Pirinen, Matti; Mwarumba, Salim; Njuguna, Patricia; Mturi, Neema; Wellcome Trust Case-Control Consortium 2; Kenyan Bacteraemia Study Group; Williams, Thomas N; +2 more... Scott, J Anthony G; Hill, Adrian VS; (2018) Genetic variation in VAC14 is associated with bacteremia secondary to diverse pathogens in African children. Proceedings of the National Academy of Sciences of the United States of America, 115 (16). E3601-E3603. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1802071115

Gilchrist, James J; Rautanen, Anna; Fairfax, Benjamin P; Mills, Tara C; Naranbhai, Vivek; Trochet, Holly; Pirinen, Matti; Muthumbi, Esther; Mwarumba, Salim; Njuguna, Patricia; +12 more... Mturi, Neema; Msefula, Chisomo L; Gondwe, Esther N; MacLennan, Jenny M; Chapman, Stephen J; Molyneux, Malcolm E; Knight, Julian C; Spencer, Chris CA; Williams, Thomas N; MacLennan, Calman A; Scott, J Anthony G; Hill, Adrian VS; (2018) Risk of nontyphoidal Salmonella bacteraemia in African children is modified by STAT4. Nature communications, 9 (1). 1014-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-017-02398-z

Gilchrist, James J; Uyoga, Sophie; Pirinen, Matti; Rautanen, Anna; Mwarumba, Salim; Njuguna, Patricia; Mturi, Neema; Kenyan Bacteraemia Study Group; Hill, Adrian VS; Scott, J Anthony G; +1 more... Williams, Thomas N; Kenyan Bacteraemia Study Group; (2020) Risk of pneumococcal bacteremia in Kenyan children with glucose-6-phosphate dehydrogenase deficiency. BMC MEDICINE, 18 (1). 148-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-020-01604-y

Grant, Lindsay R; Hammitt, Laura L; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony; (2012) Procedures for collection of induced sputum specimens from children. Clinical infectious diseases, 54 Sup (Suppl ). S140-S145. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1069 Full text not available from this repository.

Hammitt, Laura L; Akech, Donald O; Morpeth, Susan C; Karani, Angela; Kihuha, Norbert; Nyongesa, Sammy; Bwanaali, Tahreni; Mumbo, Edward; Kamau, Tatu; Sharif, Shahnaaz K; +1 more... Scott, J Anthony G; (2014) Population effect of 10-valent pneumococcal conjugate vaccine on nasopharyngeal carriage of Streptococcus pneumoniae and non-typeable Haemophilus influenzae in Kilifi, Kenya: findings from cross-sectional carriage studies. The Lancet Global health, 2 (7). e397-e405. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(14)70224-4

Hammitt, Laura L; Crane, Rosie J; Karani, Angela; Mutuku, Alex; Morpeth, Susan C; Burbidge, Polly; Goldblatt, David; Kamau, Tatu; Sharif, Shahnaaz; Mturi, Neema; +1 more... Scott, J Anthony G; (2016) Effect of Haemophilus influenzae type b vaccination without a booster dose on invasive H influenzae type b disease, nasopharyngeal carriage, and population immunity in Kilifi, Kenya: a 15-year regional surveillance study. The Lancet Global health, 4 (3). e185-e194. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(15)00316-2

Hammitt, Laura L; Etyang, Anthony O; Morpeth, Susan C; Ojal, John; Mutuku, Alex; Mturi, Neema; Moisi, Jennifer C; Adetifa, Ifedayo M; Karani, Angela; Akech, Donald O; +14 more... Otiende, Mark; Bwanaali, Tahreni; Wafula, Jackline; Mataza, Christine; Mumbo, Edward; Tabu, Collins; Knoll, Maria Deloria; Bauni, Evasius; Marsh, Kevin; Williams, Thomas N; Kamau, Tatu; Sharif, Shahnaaz K; Levine, Orin S; Scott, J Anthony G; (2019) Effect of ten-valent pneumococcal conjugate vaccine on invasive pneumococcal disease and nasopharyngeal carriage in Kenya: a longitudinal surveillance study. Lancet, 393 (10186). pp. 2146-2154. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(18)33005-8

Hammitt, Laura L; Feikin, Daniel R; Scott, J Anthony G; Zeger, Scott L; Murdoch, David R; O'Brien, Katherine L; Deloria Knoll, Maria; (2017) Addressing the Analytic Challenges of Cross-Sectional Pediatric Pneumonia Etiology Data. Clinical infectious diseases, 64 (suppl_). S197-S204. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix147

Hammitt, Laura L; Kazungu, Sidi; Morpeth, Susan C; Gibson, Dustin G; Mvera, Benedict; Brent, Andrew J; Mwarumba, Salim; Onyango, Clayton O; Bett, Anne; Akech, Donald O; +3 more... Murdoch, David R; Nokes, D James; Scott, J Anthony G; (2012) A preliminary study of pneumonia etiology among hospitalized children in Kenya. Clinical infectious diseases, 54 Sup (Suppl ). S190-S199. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1071 Full text not available from this repository.

Hammitt, Laura L; Kazungu, Sidi; Welch, Steve; Bett, Anne; Onyango, Clayton O; Gunson, Rory N; Scott, J Anthony G; Nokes, D James; (2011) Added value of an oropharyngeal swab in detection of viruses in children hospitalized with lower respiratory tract infection. Journal of clinical microbiology, 49 (6). pp. 2318-2320. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.02605-10 Full text not available from this repository.

Hammitt, Laura L; Murdoch, David R; Scott, J Anthony G; Driscoll, Amanda; Karron, Ruth A; Levine, Orin S; O'Brien, Katherine L; Pneumonia Methods Working Group; (2012) Specimen collection for the diagnosis of pediatric pneumonia. Clinical infectious diseases, 54 Sup (Suppl ). S132-S139. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1068

Hammitt, Laura L; Ojal, John; Bashraheil, Mahfudh; Morpeth, Susan C; Karani, Angela; Habib, Ahsan; Borys, Dorota; Goldblatt, David; Scott, J Anthony G; (2014) Immunogenicity, impact on carriage and reactogenicity of 10-valent pneumococcal non-typeable Haemophilus influenzae protein D conjugate vaccine in Kenyan children aged 1-4 years: a randomized controlled trial. PloS one, 9 (1). e85459-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0085459

Hart, John D; Street, Teresa; Wrightson, John M; Moore, David P; Scott, Anthony G; Crook, Derrick W; Turner, Gareth DH; (2014) rRNA sequencing in molecular microbiological diagnosis of bacterial infections in the autopsy setting. Pathology, 46. S26-S26. ISSN 0031-3025 DOI: https://doi.org/10.1097/01.pat.0000454139.86780.3b Full text not available from this repository.

Head, Michael G; Brown, Rebecca J; Newell, Marie-Louise; Scott, J Anthony G; Batchelor, James; Atun, Rifat; (2020) The allocation of USdollar;105 billion in global funding from G20 countries for infectious disease research between 2000 and 2017: a content analysis of investments. The Lancet. Global health, 8 (10). e1295-e1304. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30357-0

Head, Michael G; Fitchett, Joseph R; Newell, Marie-Louise; Scott, J Anthony G; Clarke, Stuart C; Atun, Rifat; (2014) Investment in pneumonia and pneumococcal research. The Lancet infectious diseases, 14 (11). pp. 1037-1038. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(14)70949-1 Full text not available from this repository.

Head, Michael G; Fitchett, Joseph R; Newell, Marie-Louise; Scott, J Anthony G; Harris, Jennifer N; Clarke, Stuart C; Atun, Rifat; (2015) Mapping pneumonia research: A systematic analysis of UK investments and published outputs 1997-2013. EBioMedicine, 2 (9). pp. 1193-1199. ISSN 2352-3964 DOI: https://doi.org/10.1016/j.ebiom.2015.06.024

Head, Michael G; Goss, Sian; Gelister, Yann; Alegana, Victor; Brown, Rebecca J; Clarke, Stuart C; Fitchett, Joseph RA; Atun, Rifat; Scott, J Anthony G; Newell, Marie-Louise; +2 more... Padmadas, Sabu S; Tatem, Andrew J; (2017) Global funding trends for malaria research in sub-Saharan Africa: a systematic analysis. The Lancet Global health, 5 (8). e772-e781. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(17)30245-0

Henson, Sonal P; Boinett, Christine J; Ellington, Matthew J; Kagia, Ngure; Mwarumba, Salim; Nyongesa, Sammy; Mturi, Neema; Kariuki, Samuel; Scott, J Anthony G; Thomson, Nicholas R; +1 more... Morpeth, Susan C; (2017) Molecular epidemiology of Klebsiella pneumoniae invasive infections over a decade at Kilifi County Hospital in Kenya. International journal of medical microbiology, 307 (7). pp. 422-429. ISSN 1438-4221 DOI: https://doi.org/10.1016/j.ijmm.2017.07.006

Higdon, Melissa M; Hammitt, Laura L; Deloria Knoll, Maria; Baggett, Henry C; Brooks, W Abdullah; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; Murdoch, David R; +10 more... Scott, J Anthony G; Thea, Donald M; Driscoll, Amanda J; Karron, Ruth A; Park, Daniel E; Prosperi, Christine; Zeger, Scott L; O'Brien, Katherine L; Feikin, Daniel R; PERCH Study Group; (2017) Should Controls With Respiratory Symptoms Be Excluded From Case-Control Studies of Pneumonia Etiology? Reflections From the PERCH Study. Clinical infectious diseases, 64 (suppl_). S205-S212. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix076

Higdon, Melissa M; Le, Tham; O'Brien, Katherine L; Murdoch, David R; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; +28 more... Kotloff, Karen L; Levine, Orin S; Scott, J Anthony G; Thea, Donald M; Awori, Juliet O; Baillie, Vicky L; Cascio, Stephanie; Chuananon, Somchai; DeLuca, Andrea N; Driscoll, Amanda J; Ebruke, Bernard E; Endtz, Hubert P; Kaewpan, Anek; Kahn, Geoff; Karani, Angela; Karron, Ruth A; Moore, David P; Park, Daniel E; Rahman, Mohammed Ziaur; Salaudeen, Rasheed; Seidenberg, Phil; Somwe, Somwe Wa; Sylla, Mamadou; Tapia, Milagritos D; Zeger, Scott L; Deloria Knoll, Maria; Madhi, Shabir A; PERCH Study Group; (2017) Association of C-Reactive Protein With Bacterial and Respiratory Syncytial Virus-Associated Pneumonia Among Children Aged <5 Years in the PERCH Study. Clinical infectious diseases, 64 (suppl_). S378-S386. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix150

Jokinen, Jukka; Scott, J Anthony G; (2010) Estimating the proportion of pneumonia attributable to pneumococcus in Kenyan adults: latent class analysis. Epidemiology (Cambridge, Mass), 21 (5). pp. 719-725. ISSN 1044-3983 DOI: https://doi.org/10.1097/EDE.0b013e3181e4c4d5

Kagia, Ngure; Kosgei, Patrick; Ooko, Michael; Wafula, Leonard; Mturi, Neema; Anampiu, Kirimi; Mwarumba, Salim; Njuguna, Patricia; Seale, Anna C; Berkley, James A; +3 more... Bottomley, Christian; Scott, J Anthony G; Morpeth, Susan C; (2019) Carriage and Acquisition of Extended-spectrum β-Lactamase-producing Enterobacterales Among Neonates Admitted to Hospital in Kilifi, Kenya. Clinical Infectious Diseases, 69 (5). pp. 751-759. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciy976

Kagucia, E Wangeci; Gitonga, John N; Kalu, Catherine; Ochomo, Eric; Ochieng, Benard; Kuya, Nickline; Karani, Angela; Nyagwange, James; Karia, Boniface; Mugo, Daisy; +33 more... Karanja, Henry K; Tuju, James; Mutiso, Agnes; Maroko, Hosea; Okubi, Lucy; Maitha, Eric; Ajuck, Hossan; Mukabi, David; Moracha, Wycliffe; Bulimu, David; Andanje, Nelson; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Ng'ang'a, Wangari; Nyaguara, Amek; Voller, Shirine; Otiende, Mark; Bottomley, Christian; Agoti, Charles N; Ochola-Oyier, Lynette I; Adetifa, Ifedayo MO; Etyang, Anthony O; Gallagher, Katherine E; Uyoga, Sophie; Barasa, Edwine; Bejon, Philip; Tsofa, Benjamin; Agweyu, Ambrose; Warimwe, George M; Scott, J Anthony G; Magarini Sub-County TDA SARS-CoV-2 Serosurveillance Team, The Bu; (2021) Anti-Severe Acute Respiratory Syndrome Coronavirus 2 Immunoglobulin G Antibody Seroprevalence Among Truck Drivers and Assistants in Kenya. Open Forum Infectious Diseases, 8 (7). ofab314-. DOI: https://doi.org/10.1093/ofid/ofab314

Kagucia, E Wangeci; Voller, Shirine; Ziraba, Abdhalah K; Bigogo, Godfrey; Munywoki, Patrick K; Makobu, Kimani; Nokes, D James; Nyagwange, James; Orlendo, Cameline; Akech, Donald; +22 more... Sigilai, Antipa; Onyango, Clayton; Juma, Bonventure; Herman-Roloff, Amy; Munyua, Peninah; Apondi, Caroline; Lidechi, Shirley; Audi, Allan; Ouma, Alice; Aol, George; Misore, Thomas; Nasimiyu, Caroline; Onyango, Dickens; Lo, Terrence; Kasera, Kadondi; Jalang'o, Rose; Kingwara, Leonard; Adetifa, Ifedayo; Etyang, Anthony O; Warimwe, George; Agweyu, Ambrose; Scott, J Anthony G; (2024) Profile: The Kenya Multi-Site Serosurveillance (KEMIS) collaboration. Gates open research, 8 (60). p. 60. ISSN 2572-4754 DOI: https://doi.org/10.12688/gatesopenres.15569.1

Kagucia, E Wangeci; Ziraba, Abdhala K; Nyagwange, James; Kutima, Bernadette; Kimani, Makobu; Akech, Donald; Ng'oda, Maurine; Sigilai, Antipa; Mugo, Daisy; Karanja, Henry; +28 more... Gitonga, John; Karani, Angela; Toroitich, Monica; Karia, Boniface; Otiende, Mark; Njeri, Anne; Aman, Rashid; Amoth, Patrick; Mwangangi, Mercy; Kasera, Kadondi; Ng'ang'a, Wangari; Voller, Shirine; Ochola-Oyier, Lynette I; Bottomley, Christian; Nyaguara, Amek; Munywoki, Patrick K; Bigogo, Godfrey; Maitha, Eric; Uyoga, Sophie; Gallagher, Katherine E; Etyang, Anthony O; Barasa, Edwine; Mwangangi, Joseph; Bejon, Philip; Adetifa, Ifedayo MO; Warimwe, George M; Scott, J Anthony G; Agweyu, Ambrose; (2023) SARS-CoV-2 seroprevalence and implications for population immunity: Evidence from two Health and Demographic Surveillance System sites in Kenya, February-December 2022. Influenza and other respiratory viruses, 17 (9). e13173-. ISSN 1750-2640 DOI: https://doi.org/10.1111/irv.13173

Kamau, Alice; Mwangangi, Joseph M; Rono, Martin K; Mogeni, Polycarp; Omedo, Irene; Midega, Janet; Scott, J Anthony G; Bejon, Philip; (2018) Variation in the effectiveness of insecticide treated nets against malaria and outdoor biting by vectors in Kilifi, Kenya. Wellcome Open Research, 2. p. 22. DOI: https://doi.org/10.12688/wellcomeopenres.11073.4

Kamau, Alice; Mwangangi, Joseph M; Rono, Martin K; Mogeni, Polycarp; Omedo, Irene; Midega, Janet; Scott, J Anthony G; Bejon, Philip; (2018) Variation in the effectiveness of insecticide treated nets against malaria and outdoor biting by vectors in Kilifi, Kenya. Wellcome open research, 2. 22-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.11073.4

Kamau, Alice; Mwangangi, Joseph M; Rono, Martin K; Mogeni, Polycarp; Omedo, Irene; Midega, Janet; Scott, J Anthony G; Bejon, Philip; (2018) Variation in the effectiveness of insecticide treated nets against malaria and outdoor biting by vectors in Kilifi, Kenya. Wellcome Open Research, 2. p. 22. DOI: https://doi.org/10.12688/wellcomeopenres.11073.1

Kamau, Alice; Nyaga, Victoria; Bauni, Evasius; Tsofa, Benjamin; Noor, Abdisalan M; Bejon, Philip; Scott, J Anthony G; Hammitt, Laura L; (2017) Trends in bednet ownership and usage, and the effect of bednets on malaria hospitalization in the Kilifi Health and Demographic Surveillance System (KHDSS): 2008-2015. BMC infectious diseases, 17 (1). 720-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2822-x

Kapulu, Melissa C; Muthumbi, Esther; Otieno, Edward; Rossi, Omar; Ferruzzi, Pietro; Necchi, Francesca; Acquaviva, Alessandra; Martin, Laura B; Orindi, Benedict; Mwai, Kennedy; +14 more... Kibet, Hillary; Mwanzu, Alfred; Bigogo, Godfrey M; Verani, Jennifer R; Mbae, Cecilia; Nyundo, Christopher; Agoti, Charles N; Nakakana, Usman Nasir; Conti, Valentino; Bejon, Philip; Kariuki, Samuel; Scott, J Anthony G; Micoli, Francesca; Podda, Audino; (2024) Age-dependent acquisition of IgG antibodies to Shigella serotypes-a retrospective analysis of seroprevalence in Kenyan children with implications for infant vaccination. Frontiers in immunology, 15. 1340425-. ISSN 1664-3224 DOI: https://doi.org/10.3389/fimmu.2024.1340425

Kenyan Bacteraemia Study Group; Wellcome Trust Case Control Consortium 2 (WTCCC2); Rautanen, Anna; Pirinen, Matti; Mills, Tara C; Rockett, Kirk A; Strange, Amy; Ndungu, Anne W; Naranbhai, Vivek; Gilchrist, James J; +50 more... Bellenguez, Céline; Freeman, Colin; Band, Gavin; Bumpstead, Suzannah J; Edkins, Sarah; Giannoulatou, Eleni; Gray, Emma; Dronov, Serge; Hunt, Sarah E; Langford, Cordelia; Pearson, Richard D; Su, Zhan; Vukcevic, Damjan; Macharia, Alex W; Uyoga, Sophie; Ndila, Carolyne; Mturi, Neema; Njuguna, Patricia; Mohammed, Shebe; Berkley, James A; Mwangi, Isaiah; Mwarumba, Salim; Kitsao, Barnes S; Lowe, Brett S; Morpeth, Susan C; Khandwalla, Iqbal; Kilifi Bacteraemia Surveillance Group; Blackwell, Jenefer M; Bramon, Elvira; Brown, Matthew A; Casas, Juan P; Corvin, Aiden; Duncanson, Audrey; Jankowski, Janusz; Markus, Hugh S; Mathew, Christopher G; Palmer, Colin NA; Plomin, Robert; Sawcer, Stephen J; Trembath, Richard C; Viswanathan, Ananth C; Wood, Nicholas W; Deloukas, Panos; Peltonen, Leena; Williams, Thomas N; Scott, J Anthony G; Chapman, Stephen J; Donnelly, Peter; Hill, Adrian VS; Spencer, Chris CA; (2016) Polymorphism in a lincRNA Associates with a Doubled Risk of Pneumococcal Bacteremia in Kenyan Children. American journal of human genetics, 98 (6). pp. 1092-1100. ISSN 0002-9297 DOI: https://doi.org/10.1016/j.ajhg.2016.03.025

Khor, CC; Vannberg, FO; Chapman, SJ; Walley, A; Aucan, C; Loke, H; White, NJ; Peto, T; Khor, LK; Kwiatkowski, D; +8 more... Day, N; Scott, A; Berkley, JA; Marsh, K; Peshu, N; Maitland, K; Williams, TN; Hill, AVS; (2007) Positive replication and linkage disequilibrium mapping of the chromosome 21q22.1 malaria susceptibility locus. Genes and immunity, 8 (7). pp. 570-576. ISSN 1466-4879 DOI: https://doi.org/10.1038/sj.gene.6364417 Full text not available from this repository.

Khor, Chiea C; Chapman, Stephen J; Vannberg, Fredrik O; Dunne, Aisling; Murphy, Caroline; Ling, Edmund Y; Frodsham, Angela J; Walley, Andrew J; Kyrieleis, Otto; Khan, Amir; +24 more... Aucan, Christophe; Segal, Shelley; Moore, Catrin E; Knox, Kyle; Campbell, Sarah J; Lienhardt, Christian; Scott, Anthony; Aaby, Peter; Sow, Oumou Y; Grignani, Robert T; Sillah, Jackson; Sirugo, Giorgio; Peshu, Nobert; Williams, Thomas N; Maitland, Kathryn; Davies, Robert JO; Kwiatkowski, Dominic P; Day, Nicholas P; Yala, Djamel; Crook, Derrick W; Marsh, Kevin; Berkley, James A; O'Neill, Luke AJ; Hill, Adrian VS; (2007) A Mal functional variant is associated with protection against invasive pneumococcal disease, bacteremia, malaria and tuberculosis. Nature genetics, 39 (4). pp. 523-528. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng1976 Full text not available from this repository.

Khor, Chiea C; Vannberg, Fredrik O; Chapman, Stephen J; Guo, Haiyan; Wong, Sunny H; Walley, Andrew J; Vukcevic, Damjan; Rautanen, Anna; Mills, Tara C; Chang, Kwok-Chiu; +25 more... Kam, Kai-Man; Crampin, Amelia C; Ngwira, Bagrey; Leung, Chi-Chiu; Tam, Cheuk-Ming; Chan, Chiu-Yeung; Sung, Joseph JY; Yew, Wing-Wai; Toh, Kai-Yee; Tay, Stacey KH; Kwiatkowski, Dominic; Lienhardt, Christian; Hien, Tran-Tinh; Day, Nicholas P; Peshu, Nobert; Marsh, Kevin; Maitland, Kathryn; Scott, J Anthony; Williams, Thomas N; Berkley, James A; Floyd, Sian; Tang, Nelson LS; Fine, Paul EM; Goh, Denise LM; Hill, Adrian VS; (2010) CISH and susceptibility to infectious diseases. The New England journal of medicine, 362 (22). pp. 2092-2101. ISSN 0028-4793 DOI: https://doi.org/10.1056/NEJMoa0905606

Kimaro Mlacha, Sheila Z; Peret, Teresa CT; Kumar, Nikhil; Romero-Steiner, Sandra; Dunning Hotopp, Julie C; Ishmael, Nadeeza; Grinblat-Huse, Valerie; Riley, David R; Erdman, Dean D; Carlone, George M; +3 more... Sampson, Jacquelyn; Scott, J Anthony G; Tettelin, Hervé; (2013) Transcriptional adaptation of pneumococci and human pharyngeal cells in the presence of a virus infection. BMC genomics, 14 (1). 378-. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-14-378

Kimaro Mlacha, Sheila Z; Romero-Steiner, Sandra; Hotopp, Julie C Dunning; Kumar, Nikhil; Ishmael, Nadeeza; Riley, David R; Farooq, Umar; Creasy, Todd H; Tallon, Luke J; Liu, Xinyue; +6 more... Goldsmith, Cynthia S; Sampson, Jacquelyn; Carlone, George M; Hollingshead, Susan K; Scott, J Anthony G; Tettelin, Hervé; (2013) Phenotypic, genomic, and transcriptional characterization of Streptococcus pneumoniae interacting with human pharyngeal cells. BMC genomics, 14 (1). 383-. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-14-383

Kimaro Mlacha, Sheila Z; Warira, Anne; Gatakaa, Hellen; Goldblatt, David; Scott, J Anthony G; (2018) Outpacing the pneumococcus: Antibody dynamics in the first few days following pneumococcal capsular antigen stimulation. Scientific reports, 8 (1). 15376-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33735-x

Laine, Catherine; Mwangi, Tabitha; Thompson, Claudette M; Obiero, Jacktone; Lipsitch, Marc; Scott, J Anthony G; (2004) Age-specific immunoglobulin g (IgG) and IgA to pneumococcal protein antigens in a population in coastal kenya. Infection and immunity, 72 (6). pp. 3331-3335. ISSN 0019-9567 DOI: https://doi.org/10.1128/IAI.72.6.3331-3335.2004 Full text not available from this repository.

Leulseged, Haleluya; A Rees, Chris; Alemu, Addisu; A Tippett Barr, Beth; Dheresa, Merga; Madrid, Lola; Scott, Anthony; Assefa, Nega; (2024) The discrepancy of antemortem clinical diagnosis and postmortem autopsy diagnosis of lung pathologies in under-five deaths and the reasons for discrepancies: a case series analysis. BMC pediatrics, 24 (1). 365-. ISSN 1471-2431 DOI: https://doi.org/10.1186/s12887-024-04854-4

Levine, Orin S; Bhat, Niranjan; Crawley, Jane; Deloria-Knoll, Maria; DeLuca, Andrea N; Driscoll, Amanda J; Feikin, Daniel R; Karron, Ruth A; Murdoch, David R; O'Brien, Katherine L; +1 more... Scott, J Anthony G; (2012) Pneumonia etiology research for child health. Introduction. Clinical infectious diseases, 54 Sup (Suppl ). S87-S88. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1050

Levine, Orin S; O'Brien, Katherine L; Deloria-Knoll, Maria; Murdoch, David R; Feikin, Daniel R; DeLuca, Andrea N; Driscoll, Amanda J; Baggett, Henry C; Brooks, W Abdullah; Howie, Stephen RC; +6 more... Kotloff, Karen L; Madhi, Shabir A; Maloney, Susan A; Sow, Samba; Thea, Donald M; Scott, J Anthony; (2012) The Pneumonia Etiology Research for Child Health Project: a 21st century childhood pneumonia etiology study. Clinical infectious diseases, 54 Sup (Suppl ). S93-101. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1052

Levine, Orin S; O'Brien, Katherine L; Knoll, Maria; Adegbola, Richard A; Black, Steven; Cherian, Thomas; Dagan, Ron; Goldblatt, David; Grange, Adenike; Greenwood, Brian; +11 more... Hennessy, Tom; Klugman, Keith P; Madhi, Shabir A; Mulholland, Kim; Nohynek, Hanna; Santosham, Mathuram; Saha, Samir K; Scott, J Anthony; Sow, Samba; Whitney, Cynthia G; Cutts, Felicity; (2006) Pneumococcal vaccination in developing countries. Lancet, 367 (9526). pp. 1880-1882. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(06)68703-5 Full text not available from this repository.

Lipsitch, Marc; Abdullahi, Osman; DʼAmour, Alexander; Xie, Wen; Weinberger, Daniel M; Tchetgen Tchetgen, Eric; Scott, J Anthony G; (2012) Estimating rates of carriage acquisition and clearance and competitive ability for pneumococcal serotypes in Kenya with a Markov transition model. Epidemiology (Cambridge, Mass), 23 (4). pp. 510-519. ISSN 1044-3983 DOI: https://doi.org/10.1097/EDE.0b013e31824f2f32 Full text not available from this repository.

Lucinde, RK; Karia, B; Ouma, N; Amadi, D; Nyundo, C; Mataza, C; Nyaguara, A; Scott, JAG; Gallagher, KE; Kagucia, E; (2022) The impact of the COVID-19 pandemic on vaccine coverage in Kilifi, Kenya: A retrospective cohort study. Vaccine, 41 (3). pp. 666-675. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2022.10.074

Lucinde, RK; Ong'ayo, G; Houlihan, C; Bottomley, C; Goldblatt, D; Scott, JAG; Gallagher, KE; (2021) Pneumococcal conjugate vaccine dose-ranging studies in humans: A systematic review. Vaccine, 39 (36). pp. 5095-5105. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2021.07.033

Lucinde, Ruth K; Mugo, Daisy; Bottomley, Christian; Karani, Angela; Gardiner, Elizabeth; Aziza, Rabia; Gitonga, John N; Karanja, Henry; Nyagwange, James; Tuju, James; +32 more... Wanjiku, Perpetual; Nzomo, Edward; Kamuri, Evans; Thuranira, Kaugiria; Agunda, Sarah; Nyutu, Gideon; Etyang, Anthony O; Adetifa, Ifedayo MO; Kagucia, Eunice; Uyoga, Sophie; Otiende, Mark; Otieno, Edward; Ndwiga, Leonard; Agoti, Charles N; Aman, Rashid A; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; Nyaguara, Amek; Ng'ang'a, Wangari; Ochola, Lucy B; Namdala, Emukule; Gaunya, Oscar; Okuku, Rosemary; Barasa, Edwine; Bejon, Philip; Tsofa, Benjamin; Ochola-Oyier, L Isabella; Warimwe, George M; Agweyu, Ambrose; Scott, J Anthony G; Gallagher, Katherine E; (2022) Sero-surveillance for IgG to SARS-CoV-2 at antenatal care clinics in three Kenyan referral hospitals: Repeated cross-sectional surveys 2020-21. PLoS One, 17 (10). e0265478-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0265478

Lugano, Doreen; Kutima, Bernadette; Kimani, Makobu; Sigilai, Antipa; Gitonga, John; Karani, Angela; Akech, Donald; Karia, Boniface; Ziraba, Abdhalah K; Maina, Angela; +19 more... Lambisia, Arnold; Omuoyo, Donwilliams; Mugo, Daisy; Lucinde, Ruth; Owuor, Sharon; Konyino, Gloria; Newman, Joseph; Bailey, Dalan; Nduati, Eunice; Githinji, George; Agoti, Charles N; Bejon, Philip; Scott, J Anthony G; Agweyu, Ambrose; Kagucia, Wangeci; Warimwe, George M; Sande, Charles; Ochola-Oyier, Lynette I; Nyagwange, James; (2024) Evaluation of population immunity against SARS-CoV-2 variants, EG.5.1, FY.4, BA.2.86, JN.1, JN.1.4, and KP.3.1.1 using samples from two health demographic surveillance systems in Kenya. BMC infectious diseases, 24. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-024-10367-3

Lundblom, Klara; Murungi, Linda; Nyaga, Victoria; Olsson, Daniel; Rono, Josea; Osier, Faith; Ogada, Edna; Montgomery, Scott; Scott, J Anthony G; Marsh, Kevin; +1 more... Färnert, Anna; (2013) Plasmodium falciparum infection patterns since birth and risk of severe malaria: a nested case-control study in children on the coast of Kenya. PloS one, 8 (2). e56032-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0056032

Lyons, Emily J; Amos, William; Berkley, James A; Mwangi, Isaiah; Shafi, Mohammed; Williams, Thomas N; Newton, Charles R; Peshu, Norbert; Marsh, Kevin; Scott, J Anthony G; +1 more... Hill, Adrian VS; (2009) Homozygosity and risk of childhood death due to invasive bacterial disease. BMC medical genetics, 10 (1). 55-. ISSN 1471-2350 DOI: https://doi.org/10.1186/1471-2350-10-55

Macharia, Alex W; Mochamah, George; Uyoga, Sophie; Ndila, Carolyne M; Nyutu, Gideon; Makale, Johnstone; Tendwa, Metrine; Nyatichi, Emily; Ojal, John; Shebe, Mohammed; +7 more... Awuondo, Kennedy O; Mturi, Neema; Peshu, Norbert; Tsofa, Benjamin; Scott, J Anthony G; Maitland, Kathryn; Williams, Thomas N; (2017) The clinical epidemiology of sickle cell anemia In Africa. American journal of hematology, 93 (3). pp. 363-370. ISSN 0361-8609 DOI: https://doi.org/10.1002/ajh.24986

Madewell, Zachary J; Keita, Adama Mamby; Das, Priya Mehta-Gupta; Mehta, Ashka; Akelo, Victor; Oluoch, Ogony Benard; Omore, Richard; Onyango, Dickens; Sagam, Caleb K; Cain, Carrie Jo; +33 more... Chukwuegbo, Cornell; Kaluma, Erick; Luke, Ronita; Ogbuanu, Ikechukwu Udo; Bassat, Quique; Kincardett, Milton; Mandomando, Inacio; Rakislova, Natalia; Varo, Rosauro; Xerinda, Elisio G; Dangor, Ziyaad; du Toit, Jeanie; Lala, Sanjay G; Madhi, Shabir A; Mahtab, Sana; Breines, Markus Roos; Degefa, Ketema; Heluf, Helina; Madrid, Lola; Scott, J Anthony G; Sow, Samba O; Tapia, Milagritos D; El Arifeen, Shams; Gurley, Emily S; Hossain, Mohammad Zahid; Islam, Kazi Munisul; Rahman, Afruna; Mutevedzi, Portia C; Whitney, Cynthia G; Blau, Dianna M; Suchdev, Parminder S; Kotloff, Karen L; Child Health and Mortality Prevention Surveillance Network; (2024) Contribution of malnutrition to infant and child deaths in Sub-Saharan Africa and South Asia. BMJ global health, 9 (12). e017262-e017262. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2024-017262

Madewell, Zachary J; Whitney, Cynthia G; Assefa, Nega; Bassat, Quique; Arifeen, Shams El; Gurley, Emily S; Jambai, Amara; Kotloff, Karen L; Madhi, Shabir A; Mandomando, Inacio; +6 more... Ogbuanu, Ikechukwu U; Onyango, Dickens; Scott, J Anthony G; Sow, Samba O; Barr, Beth A Tippett; Blau, Dianna M; (2022) Prioritising health-care strategies to reduce childhood mortality, insights from Child Health and Mortality Prevention Surveillance (CHAMPS): a longitudinal study. The Lancet Global Health, 10 Sup (S8). S8-. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(22)00137-1

Madewell, Zachary J; Whitney, Cynthia G; Velaphi, Sithembiso; Mutevedzi, Portia; Mahtab, Sana; Madhi, Shabir A; Fritz, Ashleigh; Swaray-Deen, Alim; Sesay, Tom; Ogbuanu, Ikechukwu U; +29 more... Mannah, Margaret T; Xerinda, Elisio G; Sitoe, Antonio; Mandomando, Inacio; Bassat, Quique; Ajanovic, Sara; Tapia, Milagritos D; Sow, Samba O; Mehta, Ashka; Kotloff, Karen L; Keita, Adama M; Tippett Barr, Beth A; Onyango, Dickens; Oele, Elizabeth; Igunza, Kitiezo Aggrey; Agaya, Janet; Akelo, Victor; Scott, J Anthony G; Madrid, Lola; Kelil, Yunus-Edris; Dufera, Tadesse; Assefa, Nega; Gurley, Emily S; El Arifeen, Shams; Spotts Whitney, Ellen A; Seib, Katherine; Rees, Chris A; Blau, Dianna M; Child Health and Mortality Prevention Surveillance Network; (2022) Prioritizing Health Care Strategies to Reduce Childhood Mortality. JAMA network open, 5 (10). e2237689-. ISSN 2574-3805 DOI: https://doi.org/10.1001/jamanetworkopen.2022.37689

Madrid, Lola; Alemu, Addisu; Seale, Anna C; Oundo, Joe; Tesfaye, Tseyon; Marami, Dadi; Yigzaw, Hiwot; Ibrahim, Alexander; Degefa, Ketema; Dufera, Tadesse; +21 more... Teklemariam, Zelalem; Gure, Tadesse; Leulseged, Haleluya; Wittmann, Stefanie; Abayneh, Mahlet; Fentaw, Surafel; Temesgen, Fikremelekot; Yeshi, Melisachew M; Dubale, Mehret; Girma, Zerihun; Ackley, Caroline; Damisse, Berhanu; Breines, Markus; Orlien, Stian MS; Blau, Dianna M; Breiman, Robert F; Abate, Ebba; Dessie, Yadeta; Assefa, Nega; Scott, J Anthony G; CHAMPS Ethiopia Study Group; (2023) Causes of stillbirth and death among children younger than 5 years in eastern Hararghe, Ethiopia: a population-based post-mortem study. The Lancet Global health, 11 (7). e1032-e1040. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(23)00211-5

Madrid, Lola; Vyas, Kartavya J; Kancherla, Vijaya; Leulseged, Haleluya; Suchdev, Parminder S; Bassat, Quique; Sow, Samba O; El Arifeen, Shams; Madhi, Shabir A; Onyango, Dickens; +31 more... Ogbuanu, Ikechukwu; Scott, J Anthony G; Blau, Dianna; Mandomando, Inacio; Keita, Adama M; Gurley, Emily S; Mahtab, Sana; Akelo, Victor; Sannoh, Sulaiman; Tilahun, Yenenesh; Varo, Rosauro; Onwuchekwa, Uma; Rahman, Afruna; Adam, Yasmin; Omore, Richard; Lako, Sandra; Xerinda, Elisio; Islam, Kazi Munisul; Wise, Amy; Tippet-Barr, Beth A; Kaluma, Erick; Ajanovic, Sara; Kotloff, Karen L; Hossain, Mohammad Zahid; Mutevedzi, Portia; Tapia, Milagritos D; Rogena, Emily; Moses, Francis; Whitney, Cynthia G; Assefa, Nega; CHAMPS Consortium; (2023) Neural tube defects as a cause of death among stillbirths, infants, and children younger than 5 years in sub-Saharan Africa and southeast Asia: an analysis of the CHAMPS network. The Lancet Global health, 11 (7). e1041-e1052. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(23)00191-2

Mahtab, Sana; Madewell, Zachary J; Baillie, Vicky; Dangor, Ziyaad; Lala, Sanjay G; Assefa, Nega; Berihun, Mulu; Madrid, Lola; Regassa, Lemma Demissie; Scott, J Anthony G; +30 more... Ameh, Soter; Bangura, Joseph S; Ita, Okokon; Kaluma, Erick; Ogbuanu, Ikechukwu Udo; Gaume, Brigitte; Kotloff, Karen L; Sow, Samba O; Tapia, Milagritos D; Ajanovic, Sara; Garrine, Marcelino; Mandomando, Inacio; Varo, Rosauro; Xerinda, Elisio G; Alam, Muntasir; El Arifeen, Shams; Gurley, Emily S; Hossain, Mohammad Zahid; Rahman, Afruna; Akelo, Victor; Igunza, Kitiezo Aggrey; Onyango, Clayton; Onyango, Dickens; Verani, Jennifer R; Mutevedzi, Portia; Whitney, Cynthia G; Blau, Dianna M; Madhi, Shabir A; Bassat, Quique; CHAMPSconsortium; (2024) Etiologies and comorbidities of meningitis deaths in children under 5 years in high-mortality settings: Insights from the CHAMPS Network in the post-pneumococcal vaccine era. The Journal of infection, 89 (6). 106341-. ISSN 0163-4453 DOI: https://doi.org/10.1016/j.jinf.2024.106341

Mazur, Natalie I; Löwensteyn, Yvette N; Willemsen, Joukje E; Gill, Christopher J; Forman, Leah; Mwananyanda, Lawrence M; Blau, Dianna M; Breiman, Robert F; Madhi, Shabir A; Mahtab, Sana; +20 more... Gurley, Emily S; El Arifeen, Shams; Assefa, Nega; Scott, J Anthony G; Onyango, Dickens; Tippet Barr, Beth A; Kotloff, Karen L; Sow, Samba O; Mandomando, Inacio; Ogbuanu, Ikechukwu; Jambai, Amara; Bassat, Quique; CHAMPS Network the RSV GOLD Study Group; Caballero, Mauricio T; Polack, Fernando P; Omer, Saad; Kazi, Abdul Momin; Simões, Eric AF; Satav, Ashish; Bont, Louis J; (2021) Global Respiratory Syncytial Virus-Related Infant Community Deaths. Clinical infectious diseases, 73 (Suppl_). S229-S237. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciab528

Mburu, CN; Ojal, J; Chebet, R; Akech, D; Karia, B; Tuju, J; Sigilai, A; Abbas, K; Jit, M; Funk, S; +9 more... Smits, G; van Gageldonk, PGM; van der Klis, FRM; Tabu, C; Nokes, DJ; LSHTM CMMID COVID-19 Working Group; Scott, Jag; Flasche, S; Adetifa, Imo; (2021) The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC medicine, 19 (1). 35-. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-021-01906-9

Mburu, CN; Ojal, J; Chebet, R; Akech, D; Karia, B; Tuju, J; Sigilai, A; Abbas, K; Jit, M; Funk, S; +8 more... Smits, G; van Gageldonk, PGM; van der Klis, FRM; Tabu, C; Nokes, DJ; Scott, JAG; Flasche, S; Adetifa, IMO; (2021) The importance of supplementary immunisation activities to prevent measles outbreaks during the COVID-19 pandemic in Kenya. BMC medicine. ISSN 1741-7015 DOI: https://doi.org/10.1101/2020.08.25.20181198

McAuley, Charlotte F; Webb, Clare; Makani, Julie; Macharia, Alexander; Uyoga, Sophie; Opi, Daniel H; Ndila, Carolyne; Ngatia, Antony; Scott, John Anthony G; Marsh, Kevin; +1 more... Williams, Thomas N; (2010) High mortality from Plasmodium falciparum malaria in children living with sickle cell anemia on the coast of Kenya. Blood, 116 (10). pp. 1663-1668. ISSN 0006-4971 DOI: https://doi.org/10.1182/blood-2010-01-265249 Full text not available from this repository.

McCollum, Eric D; Park, Daniel E; Watson, Nora L; Fancourt, Nicholas SS; Focht, Christopher; Baggett, Henry C; Brooks, W Abdullah; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; +28 more... Madhi, Shabir A; Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Awori, Juliet O; Chipeta, James; Chuananon, Somchai; DeLuca, Andrea N; Driscoll, Amanda J; Ebruke, Bernard E; Elhilali, Mounya; Emmanouilidou, Dimitra; Githua, Louis Peter; Higdon, Melissa M; Hossain, Lokman; Jahan, Yasmin; Karron, Ruth A; Kyalo, Joshua; Moore, David P; Mulindwa, Justin M; Naorat, Sathapana; Prosperi, Christine; Verwey, Charl; West, James E; Knoll, Maria Deloria; O'Brien, Katherine L; Feikin, Daniel R; Hammitt, Laura L; (2020) Digital auscultation in PERCH: Associations with chest radiography and pneumonia mortality in children. Pediatr Pulmonol, 55 (11). pp. 3197-3208. ISSN 8755-6863 DOI: https://doi.org/10.1002/ppul.25046

McDonald, Helen I; Tessier, Elise; White, Joanne M; Woodruff, Matthew; Knowles, Charlotte; Bates, Chris; Parry, John; Walker, Jemma L; Scott, J Anthony; Smeeth, Liam; +3 more... Yarwood, Joanne; Ramsay, Mary; Edelstein, Michael; (2020) Early impact of the coronavirus disease (COVID-19) pandemic and physical distancing measures on routine childhood vaccinations in England, January to April 2020. EUROSURVEILLANCE, 25 (19). pp. 7-12. ISSN 1560-7917 DOI: https://doi.org/10.2807/1560-7917.ES.2020.25.19.2000848

McDonald, Helen I; Tessier, Elise; White, Joanne M; Woodruff, Matthew; Knowles, Charlotte; Bates, Chris; Parry, John; Walker, Jemma L; Scott, J Anthony; Smeeth, Liam; +3 more... Yarwood, Joanne; Ramsay, Mary; Edelstein, Michael; (2020) Early impact of the COVID-19 pandemic and social distancing measures on routine childhood vaccinations in England, January to April 2020. medRxiv preprint. ISSN 1468-5833 DOI: https://doi.org/10.1101/2020.05.07.20094557

Morpeth, Susan C; Deloria Knoll, Maria; Scott, J Anthony G; Park, Daniel E; Watson, Nora L; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; +29 more... Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Thea, Donald M; Adrian, Peter V; Ahmed, Dilruba; Antonio, Martin; Bunthi, Charatdao; DeLuca, Andrea N; Driscoll, Amanda J; Githua, Louis Peter; Higdon, Melissa M; Kahn, Geoff; Karani, Angela; Karron, Ruth A; Kwenda, Geoffrey; Makprasert, Sirirat; Mazumder, Razib; Moore, David P; Mwansa, James; Nyongesa, Sammy; Prosperi, Christine; Sow, Samba O; Tamboura, Boubou; Whistler, Toni; Zeger, Scott L; Murdoch, David R; PERCH Study Group; (2017) Detection of Pneumococcal DNA in Blood by Polymerase Chain Reaction for Diagnosing Pneumococcal Pneumonia in Young Children From Low- and Middle-Income Countries. Clinical infectious diseases, 64 (suppl_). S347-S356. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix145

Morpeth, Susan C; Huggett, Jim F; Murdoch, David R; Scott, J Anthony G; (2014) Making standards for quantitative real-time pneumococcal PCR. Biomolecular detection and quantification, 2 (C). pp. 1-3. ISSN 2214-7535 DOI: https://doi.org/10.1016/j.bdq.2014.11.003

Morpeth, Susan C; Munywoki, Patrick; Hammitt, Laura L; Bett, Anne; Bottomley, Christian; Onyango, Clayton O; Murdoch, David R; Nokes, D James; Scott, J Anthony G; (2018) Impact of viral upper respiratory tract infection on the concentration of nasopharyngeal pneumococcal carriage among Kenyan children. Scientific reports, 8 (1). 11030-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-29119-w

Moïsi, Jennifer C; Gatakaa, Hellen; Berkley, James A; Maitland, Kathryn; Mturi, Neema; Newton, Charles R; Njuguna, Patricia; Nokes, James; Ojal, John; Bauni, Evasius; +5 more... Tsofa, Benjamin; Peshu, Norbert; Marsh, Kevin; Williams, Thomas N; Scott, J Anthony G; (2011) Excess child mortality after discharge from hospital in Kilifi, Kenya: a retrospective cohort analysis. Bulletin of the World Health Organization, 89 (10). 725-732A. ISSN 0042-9686 DOI: https://doi.org/10.2471/BLT.11.089235

Moïsi, Jennifer C; Gatakaa, Hellen; Noor, Abdisalan M; Williams, Thomas N; Bauni, Evasius; Tsofa, Benjamin; Levine, Orin S; Scott, J Anthony G; (2010) Geographic access to care is not a determinant of child mortality in a rural Kenyan setting with high health facility density. BMC public health, 10 (1). 142-. ISSN 1471-2458 DOI: https://doi.org/10.1186/1471-2458-10-142

Moïsi, Jennifer C; Kabuka, Jonathan; Mitingi, Dorah; Levine, Orin S; Scott, J Anthony G; (2010) Spatial and socio-demographic predictors of time-to-immunization in a rural area in Kenya: Is equity attainable? Vaccine, 28 (35). pp. 5725-5730. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2010.06.011

Moïsi, Jennifer C; Nokes, D James; Gatakaa, Hellen; Williams, Thomas N; Bauni, Evasius; Levine, Orin S; Scott, J Anthony G; (2011) Sensitivity of hospital-based surveillance for severe disease: a geographic information system analysis of access to care in Kilifi district, Kenya. Bulletin of the World Health Organization, 89 (2). pp. 102-111. ISSN 0042-9686 DOI: https://doi.org/10.2471/BLT.10.080796

Moïsi, Jennifer C; Saha, Samir K; Falade, Adegoke G; Njanpop-Lafourcade, Berthe-Marie; Oundo, Joseph; Zaidi, Anita KM; Afroj, Shirin; Bakare, RA; Buss, Julie K; Lasi, Razzaq; +7 more... Mueller, Judith; Odekanmi, AA; Sangaré, Lassana; Scott, J Anthony G; Knoll, Maria Deloria; Levine, Orin S; Gessner, Bradford D; (2009) Enhanced diagnosis of pneumococcal meningitis with use of the Binax NOW immunochromatographic test of Streptococcus pneumoniae antigen: a multisite study. Clinical infectious diseases, 48 Sup (Suppl ). S49-S56. ISSN 1058-4838 DOI: https://doi.org/10.1086/596481 Full text not available from this repository.

Muema, DM; Nduati, EW; Uyoga, M; Bashraheil, M; Scott, JAG; Hammitt, LL; Urban, BC; (2015) 10-valent pneumococcal non-typeable Haemophilus influenzae protein-D conjugate vaccine (PHiD-CV) induces memory B cell responses in healthy Kenyan toddlers. Clinical and experimental immunology, 181 (2). pp. 297-305. ISSN 0009-9104 DOI: https://doi.org/10.1111/cei.12637

Munywoki, Patrick Kiio; Ohuma, Eric O; Ngama, Mwanajuma; Bauni, Evasius; Scott, J Anthony G; Nokes, D James; (2013) Severe lower respiratory tract infection in early infancy and pneumonia hospitalizations among children, Kenya. Emerging infectious diseases, 19 (2). pp. 223-229. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid1902.120940

Murdoch, David R; Morpeth, Susan C; Hammitt, Laura L; Driscoll, Amanda J; Watson, Nora L; Baggett, Henry C; Brooks, W Abdullah; Deloria Knoll, Maria; Feikin, Daniel R; Kotloff, Karen L; +27 more... Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Adrian, Peter V; Ahmed, Dilruba; Alam, Muntasir; Awori, Juliet O; DeLuca, Andrea N; Higdon, Melissa M; Karron, Ruth A; Kwenda, Geoffrey; Machuka, Eunice M; Makprasert, Sirirat; McLellan, Jessica; Moore, David P; Mwaba, John; Mwarumba, Salim; Park, Daniel E; Prosperi, Christine; Sangwichian, Ornuma; Sissoko, Seydou; Tapia, Milagritos D; Zeger, Scott L; Howie, Stephen RC; PERCH Study Group; (2017) The Diagnostic Utility of Induced Sputum Microscopy and Culture in Childhood Pneumonia. Clinical infectious diseases, 64 (suppl_). S280-S288. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix090

Murdoch, David R; Morpeth, Susan C; Hammitt, Laura L; Driscoll, Amanda J; Watson, Nora L; Baggett, Henry C; Brooks, W Abdullah; Deloria Knoll, Maria; Feikin, Daniel R; Kotloff, Karen L; +27 more... Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Ahmed, Dilruba; Awori, Juliet O; DeLuca, Andrea N; Ebruke, Bernard E; Higdon, Melissa M; Jorakate, Possawat; Karron, Ruth A; Kazungu, Sidi; Kwenda, Geoffrey; Hossain, Lokman; Makprasert, Sirirat; Moore, David P; Mudau, Azwifarwi; Mwaba, John; Panchalingam, Sandra; Park, Daniel E; Prosperi, Christine; Salaudeen, Rasheed; Toure, Aliou; Zeger, Scott L; Howie, Stephen RC; PERCH Study Group; (2017) Microscopic Analysis and Quality Assessment of Induced Sputum From Children With Pneumonia in the PERCH Study. Clinical infectious diseases, 64 (suppl_). S271-S279. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix083

Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Karron, Ruth A; Bhat, Niranjan; Driscoll, Amanda J; Knoll, Maria Deloria; Levine, Orin S; (2009) Breathing new life into pneumonia diagnostics. Journal of clinical microbiology, 47 (11). pp. 3405-3408. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.01685-09 Full text not available from this repository.

Muriuki, John Muthii; Mentzer, Alexander J; Band, Gavin; Gilchrist, James J; Carstensen, Tommy; Lule, Swaib A; Goheen, Morgan M; Joof, Fatou; Kimita, Wandia; Mogire, Reagan; +22 more... Cutland, Clare L; Diarra, Amidou; Rautanen, Anna; Pomilla, Cristina; Gurdasani, Deepti; Rockett, Kirk; Mturi, Neema; Ndungu, Francis M; Scott, J Anthony G; Sirima, Sodiomon B; Morovat, Alireza; Prentice, Andrew M; Madhi, Shabir A; Webb, Emily L; Elliott, Alison M; Bejon, Philip; Sandhu, Manjinder S; Hill, Adrian VS; Kwiatkowski, Dominic P; Williams, Thomas N; Cerami, Carla; Atkinson, Sarah H; (2019) The ferroportin Q248H mutation protects from anemia, but not malaria or bacteremia. Science Advances, 5 (9). eaaw0109-. ISSN 2375-2548 DOI: https://doi.org/10.1126/sciadv.aaw0109

Muthumbi, Esther M; Gordon, Nicola C; Mochamah, George; Nyongesa, Sammy; Odipo, Emily; Mwarumba, Salim; Mturi, Neema; Etyang, Anthony O; Dance, David AB; Scott, J Anthony G; +1 more... Morpeth, Susan C; (2019) Population-Based Estimate of Melioidosis, Kenya. Emerging Infectious Diseases, 25 (5). pp. 984-987. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2505.180545

Muthumbi, Esther; Lowe, Brett S; Muyodi, Cyprian; Getambu, Esther; Gleeson, Fergus; Scott, J Anthony G; (2017) Risk factors for community-acquired pneumonia among adults in Kenya: a case-control study. Pneumonia (Nathan Qld), 9 (1). 17-. ISSN 2200-6133 DOI: https://doi.org/10.1186/s41479-017-0041-2

Nackers, Fabienne; Cohuet, Sandra; le Polain de Waroux, Olivier; Langendorf, Céline; Nyehangane, Dan; Ndazima, Donny; Nanjebe, Deborah; Karani, Angela; Tumwesigye, Elioda; Mwanga-Amumpaire, Juliet; +2 more... Scott, J Anthony G; Grais, Rebecca F; (2017) Carriage prevalence and serotype distribution of Streptococcus pneumoniae prior to 10-valent pneumococcal vaccine introduction: A population-based cross-sectional study in South Western Uganda, 2014. Vaccine, 35 (39). pp. 5271-5277. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.07.081

Nair, Harish; Simões, Eric Af; Rudan, Igor; Gessner, Bradford D; Azziz-Baumgartner, Eduardo; Zhang, Jian Shayne F; Feikin, Daniel R; Mackenzie, Grant A; Moiïsi, Jennifer C; Roca, Anna; +27 more... Baggett, Henry C; Zaman, Syed Ma; Singleton, Rosalyn J; Lucero, Marilla G; Chandran, Aruna; Gentile, Angela; Cohen, Cheryl; Krishnan, Anand; Bhutta, Zulfiqar A; Arguedas, Adriano; Clara, Alexey Wilfrido; Andrade, Ana Lucia; Ope, Maurice; Ruvinsky, Raúl Oscar; Hortal, María; McCracken, John P; Madhi, Shabir A; Bruce, Nigel; Qazi, Shamim A; Morris, Saul S; El Arifeen, Shams; Weber, Martin W; Scott, J Anthony G; Brooks, W Abdullah; Breiman, Robert F; Campbell, Harry; Severe Acute Lower Respiratory Infections Working Group; (2013) Global and regional burden of hospital admissions for severe acute lower respiratory infections in young children in 2010: a systematic analysis. Lancet, 381 (9875). pp. 1380-1390. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(12)61901-1 Full text not available from this repository.

Ndiritu, Moses; Cowgill, Karen D; Ismail, Amina; Chiphatsi, Salome; Kamau, Tatu; Fegan, Gregory; Feikin, Daniel R; Newton, Charles RJC; Scott, J Anthony G; (2006) Immunization coverage and risk factors for failure to immunize within the Expanded Programme on Immunization in Kenya after introduction of new Haemophilus influenzae type b and hepatitis b virus antigens. BMC public health, 6 (1). 132-. ISSN 1471-2458 DOI: https://doi.org/10.1186/1471-2458-6-132

Ngari, MM; Fegan, G; Mwangome, MK; Ngama, MJ; Mturi, N; Scott, JAG; Bauni, E; Nokes, DJ; Berkley, JA; (2017) Mortality after Inpatient Treatment for Severe Pneumonia in Children: a Cohort Study. Paediatric and perinatal epidemiology, 31 (3). pp. 233-242. ISSN 0269-5022 DOI: https://doi.org/10.1111/ppe.12348

Ngugi, Anthony K; Bottomley, Christian; Scott, J Anthony G; Mung'ala-Odera, Victor; Bauni, Evasius; Sander, Josemir W; Kleinschmidt, Immo; Newton, Charles R; (2013) Incidence of convulsive epilepsy in a rural area in Kenya. Epilepsia, 54 (8). pp. 1352-1359. ISSN 0013-9580 DOI: https://doi.org/10.1111/epi.12236

Niederer, Heather A; Willcocks, Lisa C; Rayner, Tim F; Yang, Wanling; Lau, Yu Lung; Williams, Thomas N; Scott, J Anthony G; Urban, Britta C; Peshu, Norbert; Dunstan, Sarah J; +10 more... Hien, Tran Tinh; Phu, Nguyen Hoan; Padyukov, Leonid; Gunnarsson, Iva; Svenungsson, Elisabet; Savage, Caroline O; Watts, Richard A; Lyons, Paul A; Clayton, David G; Smith, Kenneth GC; (2010) Copy number, linkage disequilibrium and disease association in the FCGR locus. Human molecular genetics, 19 (16). pp. 3282-3294. ISSN 0964-6906 DOI: https://doi.org/10.1093/hmg/ddq216

Njuguna, Patricia; Maitland, Kathryn; Nyaguara, Amek; Mwanga, Daniel; Mogeni, Polycarp; Mturi, Neema; Mohammed, Shebe; Mwambingu, Gabriel; Ngetsa, Caroline; Awuondo, Kenedy; +16 more... Lowe, Brett; Adetifa, Ifedayo; Scott, J Anthony G; Williams, Thomas N; Atkinson, Sarah; Osier, Faith; Snow, Robert W; Marsh, Kevin; Tsofa, Benjamin; Peshu, Norbert; Hamaluba, Mainga; Berkley, James A; Newton, Charles RJ; Fondo, John; Omar, Anisa; Bejon, Philip; (2019) Observational study: 27 years of severe malaria surveillance in Kilifi, Kenya. BMC Medicine, 17 (1). 124-. DOI: https://doi.org/10.1186/s12916-019-1359-9

Nokes, D James; Abwao, John; Pamba, Allan; Peenze, Ina; Dewar, John; Maghenda, J Kamino; Gatakaa, Hellen; Bauni, Evasius; Scott, J Anthony G; Maitland, Kathryn; +1 more... Williams, Thomas N; (2008) Incidence and clinical characteristics of group A rotavirus infections among children admitted to hospital in Kilifi, Kenya. PLoS medicine, 5 (7). e153-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.0050153

Nokes, D James; Ngama, Mwanajuma; Bett, Anne; Abwao, John; Munywoki, Patrick; English, Mike; Scott, J Anthony G; Cane, Patricia A; Medley, Graham F; (2009) Incidence and severity of respiratory syncytial virus pneumonia in rural Kenyan children identified through hospital surveillance. Clinical infectious diseases, 49 (9). pp. 1341-1349. ISSN 1058-4838 DOI: https://doi.org/10.1086/606055 Full text not available from this repository.

Nurkka, A; Obiero, J; Käyhty, H; Scott, JAG; (2003) Effects of sample collection and storage methods on antipneumococcal immunoglobulin A in saliva. Clinical and diagnostic laboratory immunology, 10 (3). pp. 357-361. ISSN 1071-412X DOI: https://doi.org/10.1128/cdli.10.3.357-361.2003 Full text not available from this repository.

Nyagwange, James; Kutima, Bernadette; Mwai, Kennedy; Karanja, Henry K; Gitonga, John N; Mugo, Daisy; Sein, Yiakon; Wright, Daniel; Omuoyo, Donwilliams O; Nyiro, Joyce U; +10 more... Tuju, James; Nokes, D James; Agweyu, Ambrose; Bejon, Philip; Ochola-Oyier, Lynette I; Scott, J Anthony G; Lambe, Teresa; Nduati, Eunice; Agoti, Charles; Warimwe, George M; (2023) Serum immunoglobulin G and mucosal immunoglobulin A antibodies from prepandemic samples collected in Kilifi, Kenya, neutralize SARS-CoV-2 in vitro. International Journal of Infectious Diseases, 127. pp. 11-16. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2022.11.041

Nyagwange, James; Kutima, Bernadette; Mwai, Kennedy; Karanja, Henry K; Gitonga, John N; Mugo, Daisy; Uyoga, Sophie; Tuju, James; Ochola-Oyier, Lynette I; Ndungu, Francis; +5 more... Bejon, Philip; Agweyu, Ambrose; Adetifa, Ifedayo MO; Scott, J Anthony G; Warimwe, George M; (2022) Comparative performance of WANTAI ELISA for total immunoglobulin to receptor binding protein and an ELISA for IgG to spike protein in detecting SARS-CoV-2 antibodies in Kenyan populations. Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 146. 105061-. ISSN 1386-6532 DOI: https://doi.org/10.1016/j.jcv.2021.105061

Nyiro, Joyce U; Kiyuka, Patience K; Mutunga, Martin N; Sande, Charles J; Munywoki, Patrick K; Scott, J Anthony G; Nokes, D James; (2019) Agreement between ELISA and plaque reduction neutralisation assay in Detection of respiratory syncytial virus specific antibodies in a birth Cohort from Kilifi, coastal Kenya. Wellcome open research, 4. 33-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.15108.1

Nyiro, Joyce U; Sande, Charles; Mutunga, Martin; Kiyuka, Patience K; Munywoki, Patrick K; Scott, J Anthony G; Nokes, D James; (2015) Quantifying maternally derived respiratory syncytial virus specific neutralising antibodies in a birth cohort from coastal Kenya. Vaccine, 33 (15). pp. 1797-1801. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2015.02.039

Nyiro, Joyce Uchi; Sande, Charles Jumba; Mutunga, Martin; Kiyuka, Patience Kerubo; Munywoki, Patrick Kioo; Scott, John Anthony G; Nokes, David James; (2016) Absence of Association between Cord Specific Antibody Levels and Severe Respiratory Syncytial Virus (RSV) Disease in Early Infants: A Case Control Study from Coastal Kenya. PloS one, 11 (11). e0166706-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0166706

O'Brien, Katherine L; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Stephen RC; Deloria Knoll, Maria; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; +4 more... Murdoch, David R; Scott, J Anthony G; Thea, Donald M; Zeger, Scott L; (2017) Introduction to the Epidemiologic Considerations, Analytic Methods, and Foundational Results From the Pneumonia Etiology Research for Child Health Study. Clinical infectious diseases, 64 (suppl_). S179-S184. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix142

O'Brien, Katherine; Levine, Orin S; Scott, Anthony; Deloria Knoll, Maria; Feikin, Daniel R; DeLuca, Andrea N; Driscoll, Amanda J; Fancourt, Nicholas; Fu, Wei; Haddix, Meredith; +68 more... Hammitt, Laura L; Higdon, Melissa M; Kagucia, E Wangeci; Karron, Ruth A; Li, Mengying; Park, Daniel E; Prosperi, Christine; Shi, Qiyuan; Wu, Zhenke; Zeger, Scott L; Watson, Nora L; Crawley, Jane; Murdoch, David R; Brooks, W Abdullah; Endtz, Hubert P; Zaman, Khalequ; Goswami, Doli; Hoassain, Lokman; Jahan, Yasmin; Jobayer Chisti, Mohammod; Howie, Stephen RC; Ebruke, Bernard E; Antonio, Martin; McLellan, Jessica L; Machuka, Eunice M; Shamsul, Arifin; Zaman, Syed MA; Mackenzie, Grant; Scott, Anthony G; Awori, Juliet O; Morpeth, Susan C; Kamau, Alice; Kazunga, Sidi; Ominde, Micah Silaba; Kotloff, Karen L; Tapia, Milagritos D; Sow, Samba O; Sylla, Mamadou; Tamboura, Boubou; Onwuchekwa, Uma; Kourouma, Nana; Toure, Aliou; Sissoko, Seydou; Madhi, Shabir A; Moore, David P; Adrian, Peter V; Baillie, Vicky L; Kuwanda, Locadiah; Mudau, Azwifarwi; Groome, Michelle J; Mahomed, Nasreen; Simoes, Eric AF; Baggett, Henry C; Thamthitiwat, Somsak; Maloney, Susan A; Bunthi, Charatdao; Rhodes, Julia; Sawatwong, Pongpun; Akarasewi, Pasakorn; Thea, Donald M; Mwananyanda, Lawrence; Chipeta, James; Seidenberg, Phil; Mwansa, James; Somwe, Somwe Wa; Kwenda, Geoffrey; Anderson, Trevor P; Mitchell, Joanne L; (2019) Causes of severe pneumonia requiring hospital admission in children without HIV infection from Africa and Asia: the PERCH multi-country case-control study. Lancet. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(19)30721-4

Ogero, Morris O; Isaaka, Lynda; Lucinde, Ruth; Mumelo, Livingstone; Gathuri, Henry; Kimego, Dennis; Njoroge, Teresiah; Mbevi, George; Wanyama, Conrad; Otiende, Mark; +11 more... Singa, Benson O; Tickell, Kirkby D; Walson, Judd L; Berkley, James A; Nyaguara, Amek; Bejon, Philip; Akech, Samuel; Kagucia, E Wangeci; Scott, J Anthony G; Etyang, Anthony O; Agweyu, Ambrose; (2024) Effects of the COVID-19 pandemic on hospital admissions and inpatient mortality in Kenya: a retrospective cohort study. Wellcome open research, 9. p. 582. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.21170.1

Ojal, John; Brand, Samuel PC; Were, Vincent; Okiro, Emelda A; Kombe, Ivy K; Mburu, Caroline; Aziza, Rabia; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M; +16 more... Uyoga, Sophie; Adetifa, Ifedayo MO; Scott, J Anthony G; Otieno, Edward; Ochola-Oyier, Lynette I; Agoti, Charles N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng'ang'a, Wangari; Tsofa, Benjamin; Bejon, Philip; Barasa, Edwine; Keeling, Matt J; Nokes, D James; (2022) Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data. Wellcome Open Research, 6. 127-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16748.3

Ojal, John; Brand, Samuel PC; Were, Vincent; Okiro, Emelda A; Kombe, Ivy K; Mburu, Caroline; Aziza, Rabia; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M; +16 more... Uyoga, Sophie; Adetifa, Ifedayo MO; Scott, J Anthony G; Otieno, Edward; Ochola-Oyier, Lynette I; Agoti, Charles N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng’ang’a, Wangari; Tsofa, Benjamin; Bejon, Philip; Barasa, Edwine; Keeling, Matt J; Nokes, D James; (2020) Revealing the extent of the COVID-19 pandemic in Kenya based on serological and PCR-test data. medrxiv. DOI: https://doi.org/10.1101/2020.09.02.20186817 (Submitted)

Ojal, John; Brand, Samuel PC; Were, Vincent; Okiro, Emelda A; Kombe, Ivy K; Mburu, Caroline; Aziza, Rabia; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M; +16 more... Uyoga, Sophie; Adetifa, Ifedayo MO; Scott, J Anthony G; Otieno, Edward; Ochola-Oyier, Lynette I; Agoti, Charles N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng’ang’a, Wangari; Tsofa, Benjamin; Bejon, Philip; Barasa, Edwine; Keeling, Matt J; Nokes, D James; (2021) Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data. Wellcome Open Research, 6. p. 127. DOI: https://doi.org/10.12688/wellcomeopenres.16748.1

Ojal, John; Brand, Samuel PC; Were, Vincent; Okiro, Emelda A; Kombe, Ivy K; Mburu, Caroline; Aziza, Rabia; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M; +16 more... Uyoga, Sophie; Adetifa, Ifedayo MO; Scott, J Anthony G; Otieno, Edward; Ochola-Oyier, Lynette I; Agoti, Charles N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng’ang’a, Wangari; Tsofa, Benjamin; Bejon, Philip; Barasa, Edwine; Keeling, Matt J; Nokes, D James; (2022) Revealing the extent of the first wave of the COVID-19 pandemic in Kenya based on serological and PCR-test data. Wellcome Open Research, 6. p. 127. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.16748.3

Ojal, John; Flasche, Stefan; Hammitt, Laura L; Akech, Donald; Kiti, Moses C; Kamau, Tatu; Adetifa, Ifedayo; Nurhonen, Markku; Scott, J Anthony G; Auranen, Kari; (2017) Sustained reduction in vaccine-type invasive pneumococcal disease despite waning effects of a catch-up campaign in Kilifi, Kenya: A mathematical model based on pre-vaccination data. Vaccine, 35 (35 Pt). pp. 4561-4568. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.07.019

Ojal, John; Goldblatt, David; Tigoi, Caroline; Scott, J Anthony G; (2017) Effect of Maternally Derived Anti-protein and Anticapsular IgG Antibodies on the Rate of Acquisition of Nasopharyngeal Carriage of Pneumococcus in Newborns. Clinical infectious diseases, 66 (1). pp. 121-130. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix742

Ojal, John; Griffiths, Ulla; Hammitt, Laura L; Adetifa, Ifedayo; Akech, Donald; Tabu, Collins; Scott, J Anthony G; Flasche, Stefan; (2019) Sustaining pneumococcal vaccination after transitioning from Gavi support: a modelling and cost-effectiveness study in Kenya. Lancet Global Health, 7 (5). e644-e654. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30562-X

Ojal, John; Griffiths, Ulla; Hammitt, Laura L; Adetifa, Ifedayo; Akech, Donald; Tabu, Collins; Scott, J Anthony G; Flasche, Stefan; (2019) Sustaining pneumococcal vaccination after transitioning from Gavi support: a modelling and cost-effectiveness study in Kenya. The Lancet Global Health, 7 (5). e644-e654. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30562-X

Ojal, John; Hammitt, Laura L; Gaitho, John; Scott, J Anthony G; Goldblatt, David; (2017) Pneumococcal conjugate vaccine induced IgG and nasopharyngeal carriage of pneumococci: Hyporesponsiveness and immune correlates of protection for carriage. Vaccine, 35 (35 Pt). pp. 4652-4657. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.05.088

Ominde, M; Sande, J; Ooko, M; Bottomley, C; Benamore, R; Park, K; Ignas, J; Maitland, K; Bwanaali, T; Gleeson, F; +1 more... Scott, A; (2018) Reliability and validity of the World Health Organization reading standards for paediatric chest radiographs used in the field in an impact study of Pneumococcal Conjugate Vaccine in Kilifi, Kenya. PloS one, 13 (7). e0200715-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0200715

Ong'ayo, Gerald; Ooko, Michael; Wang'ondu, Ruth; Bottomley, Christian; Nyaguara, Amek; Tsofa, Benjamin K; Williams, Thomas N; Bejon, Philip; Scott, J Anthony G; Etyang, Anthony O; (2019) Effect of strikes by health workers on mortality between 2010 and 2016 in Kilifi, Kenya: a population-based cohort analysis. The Lancet Global Health, 7 (7). e961-e967. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(19)30188-3

Onyango, Clayton O; Njeru, Regina; Kazungu, Sidi; Achilla, Rachel; Bulimo, Wallace; Welch, Stephen R; Cane, Patricia A; Gunson, Rory N; Hammitt, Laura L; Scott, J Anthony G; +2 more... Berkley, James A; Nokes, D James; (2012) Influenza surveillance among children with pneumonia admitted to a district hospital in coastal Kenya, 2007-2010. The Journal of infectious diseases, 206 Su (Suppl ). S61-S67. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jis536

Orangi, Stacey; Ojal, John; Brand, Samuel Pc; Orlendo, Cameline; Kairu, Angela; Aziza, Rabia; Ogero, Morris; Agweyu, Ambrose; Warimwe, George M; Uyoga, Sophie; +15 more... Otieno, Edward; Ochola-Oyier, Lynette I; Agoti, Charles N; Kasera, Kadondi; Amoth, Patrick; Mwangangi, Mercy; Aman, Rashid; Ng'ang'a, Wangari; Adetifa, Ifedayo Mo; Scott, J Anthony G; Bejon, Philip; Keeling, Matt J; Flasche, Stefan; Nokes, D James; Barasa, Edwine; (2022) Epidemiological impact and cost-effectiveness analysis of COVID-19 vaccination in Kenya. BMJ Global Health, 7 (8). e009430-e009430. ISSN 2059-7908 DOI: https://doi.org/10.1136/bmjgh-2022-009430

Otiende, Mark; Bauni, Evasius; Nyaguara, Amek; Amadi, David; Nyundo, Christopher; Tsory, Emmanuel; Walumbe, David; Kinuthia, Michael; Kihuha, Norbert; Kahindi, Michael; +10 more... Nyutu, Gideon; Moisi, Jennifer; Deribew, Amare; Agweyu, Ambrose; Marsh, Kevin; Tsofa, Benjamin; Bejon, Philip; Bottomley, Christian; Williams, Thomas N; Scott, J Anthony G; (2021) Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. Wellcome Open Research, 6. p. 327. DOI: https://doi.org/10.12688/wellcomeopenres.17307.1

Otiende, Mark; Bauni, Evasius; Nyaguara, Amek; Amadi, David; Nyundo, Christopher; Tsory, Emmanuel; Walumbe, David; Kinuthia, Michael; Kihuha, Norbert; Kahindi, Michael; +10 more... Nyutu, Gideon; Moisi, Jennifer; Deribew, Amare; Agweyu, Ambrose; Marsh, Kevin; Tsofa, Benjamin; Bejon, Philip; Bottomley, Christian; Williams, Thomas N; Scott, J Anthony G; (2021) Mortality in rural coastal Kenya measured using the Kilifi Health and Demographic Surveillance System: a 16-year descriptive analysis. Wellcome open research, 6. 327-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.17307.2

Park, Daniel E; Baggett, Henry C; Howie, Stephen RC; Shi, Qiyuan; Watson, Nora L; Brooks, W Abdullah; Deloria Knoll, Maria; Hammitt, Laura L; Kotloff, Karen L; Levine, Orin S; +28 more... Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Ahmed, Dilruba; Antonio, Martin; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Fu, Wei; Gitahi, Caroline W; Olutunde, Emmanuel; Higdon, Melissa M; Hossain, Lokman; Karron, Ruth A; Maiga, Abdoul Aziz; Maloney, Susan A; Moore, David P; Morpeth, Susan C; Mwaba, John; Mwenechanya, Musaku; Prosperi, Christine; Sylla, Mamadou; Thamthitiwat, Somsak; Zeger, Scott L; Feikin, Daniel R; PERCH Study Group; (2017) Colonization Density of the Upper Respiratory Tract as a Predictor of Pneumonia-Haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus, and Pneumocystis jirovecii. Clinical infectious diseases, 64 (suppl_). S328-S336. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix104

Park, Daniel E; Higdon, Melissa M; Prosperi, Christine; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Hammitt, Laura L; Howie, Steve RC; Kotloff, Karen L; Levine, Orin S; +21 more... Madhi, Shabir A; Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; Bunthi, Charatdao; Kwenda, Geoffrey; Mackenzie, Grant A; Moore, David P; Morpeth, Susan C; Mwananyanda, Lawrence; Paveenkittiporn, Wantana; Ziaur Rahman, Mohammed; Rahman, Mustafizur; Rhodes, Julia; Sow, Samba O; Tapia, Milagritos D; Deloria Knoll, Maria; (2021) Upper Respiratory Tract Co-detection of Human Endemic Coronaviruses and High-density Pneumococcus Associated With Increased Severity Among HIV-Uninfected Children Under 5 Years Old in the PERCH Study. Pediatric Infectious Disease Journal, 40 (6). pp. 503-512. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0000000000003139

Park, Daniel E; Watson, Nora L; Focht, Christopher; Feikin, Daniel; Hammitt, Laura L; Brooks, W Abdullah; Howie, Stephen RC; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; +24 more... Murdoch, David R; O'Brien, Katherine L; Scott, J Anthony G; Thea, Donald M; Amorninthapichet, Tussanee; Awori, Juliet; Bunthi, Charatdao; Ebruke, Bernard; Elhilali, Mounya; Higdon, Melissa; Hossain, Lokman; Jahan, Yasmin; Moore, David P; Mulindwa, Justin; Mwananyanda, Lawrence; Naorat, Sathapana; Prosperi, Christine; Thamthitiwat, Somsak; Verwey, Charl; Jablonski, Kathleen A; Power, Melinda C; Young, Heather A; Deloria Knoll, Maria; McCollum, Eric D; (2022) Digitally recorded and remotely classified lung auscultation compared with conventional stethoscope classifications among children aged 1-59 months enrolled in the Pneumonia Etiology Research for Child Health (PERCH) case-control study. BMJ open respiratory research, 9 (1). e001144-e001144. ISSN 2052-4439 DOI: https://doi.org/10.1136/bmjresp-2021-001144

Quincer, Elizabeth; Philipsborn, Rebecca; Morof, Diane; Salzberg, Navit T; Vitorino, Pio; Ajanovic, Sara; Onyango, Dickens; Ogbuanu, Ikechukwu; Assefa, Nega; Sow, Samba O; +30 more... Mutevedzi, Portia; El Arifeen, Shams; Tippet Barr, Beth A; Scott, J Anthony G; Mandomando, Inacio; Kotloff, Karen L; Jambai, Amara; Akelo, Victor; Cain, Carrie Jo; Chowdhury, Atique Iqbal; Gure, Tadesse; Igunza, Kitiezo Aggrey; Islam, Farzana; Keita, Adama Mamby; Madrid, Lola; Mahtab, Sana; Mehta, Ashka; Mitei, Paul K; Ntuli, Constance; Ojulong, Julius; Rahman, Afruna; Samura, Solomon; Sidibe, Diakaridia; Thwala, Bukiwe Nana; Varo, Rosauro; Madhi, Shabir A; Bassat, Quique; Gurley, Emily S; Blau, Dianna M; Whitney, Cynthia G; (2022) Insights on the differentiation of stillbirths and early neonatal deaths: A study from the Child Health and Mortality Prevention Surveillance (CHAMPS) network. PloS one, 17 (7). e0271662-. DOI: https://doi.org/10.1371/journal.pone.0271662

Sadarangani, M; Seaton, C; Scott, JA; Ogutu, B; Edwards, T; Prins, A; Gatakaa, H; Idro, R; Berkley, JA; Peshu, N; +2 more... Neville, BG; Newton, CR; (2008) Incidence and outcome of convulsive status epilepticus in Kenyan children: a cohort study. Lancet neurology, 7 (2). pp. 145-50. ISSN 1474-4422 DOI: https://doi.org/10.1016/S1474-4422(07)70331-9

Salzberg, Navit T; Sivalogan, Kasthuri; Bassat, Quique; Taylor, Allan W; Adedini, Sunday; El Arifeen, Shams; Assefa, Nega; Blau, Dianna M; Chawana, Richard; Cain, Carrie Jo; +23 more... Cain, Kevin P; Caneer, J Patrick; Garel, Mischka; Gurley, Emily S; Kaiser, Reinhard; Kotloff, Karen L; Mandomando, Inacio; Morris, Timothy; Nyamthimba Onyango, Peter; Sazzad, Hossain MS; Scott, J Anthony G; Seale, Anna C; Sitoe, Antonio; Sow, Samba O; Tapia, Milagritos D; Whitney, Ellen A; Worrell, Mary Claire; Zielinski-Gutierrez, Emily; Madhi, Shabir A; Raghunathan, Pratima L; Koplan, Jeffrey P; Breiman, Robert F; Child Health and Mortality Prevention Surveillance (CHAMPS) Meth; (2019) Mortality Surveillance Methods to Identify and Characterize Deaths in Child Health and Mortality Prevention Surveillance Network Sites. Clinical infectious diseases, 69 (Suppl ). S262-S273. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/ciz599

Sankoh, O; INDEPTH Network and partners; , COLLABORATORS; Sankoh, O; Bangha, M; Emina, JB; Herbst, AJ; Tollman, S; Kant, S; Aaby, P; +152 more... Chowdhury, A; Delaunay, V; Diallo, A; Khan, WA; Streatfield, K; Alam, N; Bhuiya, A; Ha, BT; Molla, M; Kebede, Y; Alberts, M; Toan, TK; Chuc, NT; Gyapong, M; Jasseh, M; Tessema, F; Nathan, R; Salim, A; Masanja, H; Punpuing, S; Crampin, A; Nyrienda, M; Kouanda, S; Mangen, FW; Lutalo, T; Sewankambo, N; Williams, TN; Scott, JA; Assefa, N; Adama, Y; Gebru, AA; Owusu-Agyei, S; Odhiambo, F; Otieno, W; Sifuna, P; Macete, E; Urassa, M; Larson, P; Ezeh, A; Beguy, D; Kyobutungi, C; Tinto, H; Oche, OM; Oduro, A; Sie, A; Soura, A; Wilopo, S; Sirima, S; Bonfoh, B; Juvekar, S; Sonko, B; Nguyen, BP; Meremikwu, M; Asiki, G; Thompson, R; Clark, SJ; Binka, F; Sankoh, O; Sankoh, O; Herbst, AJ; Tollman, S; Kant, S; Aaby, P; Chowdhury, A; Delaunay, V; Diallo, A; Khan, WA; Streatfield, K; Alam, N; Bhuiya, A; Ha, BT; Molla, M; Kebede, Y; Alberts, M; Toan, TK; Chuc, NT; Gyapong, M; Jasseh, M; Tessema, F; Nathan, R; Salim, A; Masanja, H; Punpuing, S; Crampin, A; Nyrienda, M; Kouanda, S; Mangen, FW; Lutalo, T; Sewankambo, N; Williams, TN; Scott, JA; Assefa, N; Adama, Y; Gebru, AA; Owusu-Agyei, S; Odhiambo, F; Otieno, W; Sifuna, P; Macete, E; Urassa, M; Larson, P; Ezeh, A; Beguy, D; Kyobutungi, C; Tinto, H; Oche, OM; Oduro, A; Sie, A; Soura, A; Wilopo, S; Sirima, S; Bonfoh, B; Juvekar, S; Sonko, B; Nguyen, BP; Meremikwu, M; Asiki, G; Thompson, R; Evans, T; Byass, P; Adami, HO; Campbell, H; Ekstrom, AM; Mwenesi, H; Ross, D; Mbacké, C; Moyer, C; Asangansi, I; Bocquier, P; Clark, SJ; Gage, J; McPake, B; Clark, J; Sturkenboom, M; Weibel, D; Bonhoeffer, J; Dolinger, D; Boehme, C; Ye, Y; Binka, F; de Savigny, D; Long, KZ; Käser, M; Karim, A; Mäusezahl, D; Tanner, M; de Savigny, D; Long, KZ; Käser, M; Karim, A; Mäusezahl, D; Tanner, M; (2017) Why population-based data are crucial to achieving the Sustainable Development Goals. International journal of epidemiology. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyx010

Satzke, Catherine; Turner, Paul; Virolainen-Julkunen, Anni; Adrian, Peter V; Antonio, Martin; Hare, Kim M; Henao-Restrepo, Ana Maria; Leach, Amanda J; Klugman, Keith P; Porter, Barbara D; +5 more... Sá-Leão, Raquel; Scott, J Anthony; Nohynek, Hanna; O'Brien, Katherine L; WHO Pneumococcal Carriage Working Group; (2013) Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group. Vaccine, 32 (1). pp. 165-179. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2013.08.062

Scott, J Anthony G; (2008) The global epidemiology of childhood pneumonia 20 years on. Bulletin of the World Health Organization, 86 (6). pp. 494-496. ISSN 0042-9686 DOI: https://doi.org/10.2471/blt.08.052753

Scott, J Anthony G; Bauni, Evasius; Moisi, Jennifer C; Ojal, John; Gatakaa, Hellen; Nyundo, Christopher; Molyneux, Catherine S; Kombe, Francis; Tsofa, Benjamin; Marsh, Kevin; +2 more... Peshu, Norbert; Williams, Thomas N; (2012) Profile: The Kilifi Health and Demographic Surveillance System (KHDSS). International journal of epidemiology, 41 (3). pp. 650-657. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dys062

Scott, J Anthony G; Berkley, James A; Mwangi, Isaiah; Ochola, Lucy; Uyoga, Sophie; Macharia, Alexander; Ndila, Carolyne; Lowe, Brett S; Mwarumba, Salim; Bauni, Evasius; +2 more... Marsh, Kevin; Williams, Thomas N; (2011) Relation between falciparum malaria and bacteraemia in Kenyan children: a population-based, case-control study and a longitudinal study. Lancet, 378 (9799). pp. 1316-1323. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(11)60888-X

Scott, J Anthony G; Brooks, W Abdullah; Peiris, JS Malik; Holtzman, Douglas; Mulholland, E Kim; (2008) Pneumonia research to reduce childhood mortality in the developing world. The Journal of clinical investigation, 118 (4). pp. 1291-1300. ISSN 0021-9738 DOI: https://doi.org/10.1172/JCI33947

Scott, J Anthony G; English, Mike; (2008) What are the implications for childhood pneumonia of successfully introducing Hib and pneumococcal vaccines in developing countries? PLoS medicine, 5 (4). e86-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.0050086

Scott, J Anthony G; Marston, Eric L; Hall, Andrew J; Marsh, Kevin; (2003) Diagnosis of pneumococcal pneumonia by psaA PCR analysis of lung aspirates from adult patients in Kenya. Journal of clinical microbiology, 41 (6). pp. 2554-2559. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.41.6.2554-2559.2003 Full text not available from this repository.

Scott, J Anthony G; Mlacha, Zena; Nyiro, Joyce; Njenga, Salome; Lewa, Pole; Obiero, Jacktone; Otieno, Hanningtone; Sampson, Jacquelyn S; Carlone, George M; (2005) Diagnosis of invasive pneumococcal disease among children in Kenya with enzyme-linked immunosorbent assay for immunoglobulin G antibodies to pneumococcal surface adhesin A. Clinical and diagnostic laboratory immunology, 12 (10). pp. 1195-1201. ISSN 1071-412X DOI: https://doi.org/10.1128/CDLI.12.10.1195-1201.2005 Full text not available from this repository.

Scott, J Anthony G; Mwarumba, Salim; Ngetsa, Caroline; Njenga, Salome; Lowe, Brett S; Slack, Mary PE; Berkley, James A; Mwangi, Isaiah; Maitland, Kathryn; English, Mike; +1 more... Marsh, Kevin; (2005) Progressive increase in antimicrobial resistance among invasive isolates of Haemophilus influenzae obtained from children admitted to a hospital in Kilifi, Kenya, from 1994 to 2002. Antimicrobial agents and chemotherapy, 49 (7). pp. 3021-3024. ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.49.7.3021-3024.2005 Full text not available from this repository.

Scott, J Anthony G; Obiero, Jacktone; Hall, Andrew J; Marsh, Kevin; (2002) Validation of immunoglobulin G enzyme-linked immunosorbent assay for antibodies to pneumococcal surface adhesin A in the diagnosis of pneumococcal pneumonia among adults in Kenya. The Journal of infectious diseases, 186 (2). pp. 220-226. ISSN 0022-1899 DOI: https://doi.org/10.1086/341205 Full text not available from this repository.

Scott, J Anthony G; Ojal, John; Ashton, Lindsey; Muhoro, Anne; Burbidge, Polly; Goldblatt, David; (2011) Pneumococcal conjugate vaccine given shortly after birth stimulates effective antibody concentrations and primes immunological memory for sustained infant protection. Clinical infectious diseases, 53 (7). pp. 663-670. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir444

Scott, J Anthony G; Wonodi, Chizoba; Moïsi, Jennifer C; Deloria-Knoll, Maria; DeLuca, Andrea N; Karron, Ruth A; Bhat, Niranjan; Murdoch, David R; Crawley, Jane; Levine, Orin S; +3 more... O'Brien, Katherine L; Feikin, Daniel R; Pneumonia Methods Working Group; (2012) The definition of pneumonia, the assessment of severity, and clinical standardization in the Pneumonia Etiology Research for Child Health study. Clinical infectious diseases, 54 Sup (Suppl ). S109-S116. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1065

Scott, JAG; (2007) The preventable burden of pneumococcal disease in the developing world. Vaccine, 25 (13). pp. 2398-2405. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2006.09.008 Full text not available from this repository.

Seale, Anna C; Assefa, Nega; Madrid, Lola; Wittmann, Stefanie; Abdurahman, Hanan; Teferi, Nardos; Gedefa, Letta; Mohamed, Alexander; Debela, Natnael; Tesfaye, Tseyon; +39 more... Samuel, Tigistu; Dubale, Mehret; Yigzaw, Hiwot; Taye, Eyoel; Bekele, Workalemahu; Ackley, Caroline; Keno, Gutema Imana; Zegeye, Yosef; Girma, Zerihun; Degefa, Ketema; Damisse, Berhanu; Tadesse, Adugna; Aliyi, Mohammed; Feyissa, Gurmu; Tilahun, Yenenesh; Wakwaya, Getahun; Sintayehu, Bizunesh; Abayneh, Getamesay; Alemu, Addisu; Azore, Emmanuel; Oundo, Joe; Mariam, Zelalem T; Marami, Dadi; Berihun, Mulu; Berhanu, Mussie; Mekonnen, Mahlet; Alemayehu, Andualem; Sarkodie-Mensah, Nana; Voller, Shirine; Jibendi, Boniface; Aseffa, Abraham; Balcha, Taye; F. Breiman, Robert; Dowell, Scott F; Worku, Asnake; Kifle, Tsigereda; Abate, Ebba; Dessie, Yadeta; Scott, J Anthony G; (2022) Setting up child health and mortality prevention surveillance in Ethiopia. Gates Open Research, 5. p. 173. ISSN 2572-4754 DOI: https://doi.org/10.12688/gatesopenres.13395.1

Seale, Anna C; Davies, Mark R; Anampiu, Kirimi; Morpeth, Susan C; Nyongesa, Sammy; Mwarumba, Salim; Smeesters, Pierre R; Efstratiou, Androulla; Karugutu, Rosylene; Mturi, Neema; +5 more... Williams, Thomas N; Scott, J Anthony G; Kariuki, Samuel; Dougan, Gordon; Berkley, James A; (2016) Invasive Group A Streptococcus Infection among Children, Rural Kenya. Emerging infectious diseases, 22 (2). pp. 224-232. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2202.151358

Seale, Anna C; Gordon, N Claire; Islam, Jasmin; Peacock, Sharon J; Scott, J Anthony G; (2017) AMR Surveillance in low and middle-income settings - A roadmap for participation in the Global Antimicrobial Surveillance System (GLASS). Wellcome open research, 2. 92-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12527.1

Seale, Anna C; Hutchison, Coll; Fernandes, Silke; Stoesser, Nicole; Kelly, Helen; Lowe, Brett; Turner, Paul; Hanson, Kara; Chandler, Clare IR; Goodman, Catherine; +2 more... Stabler, Richard A; Scott, J Anthony G; (2017) Supporting surveillance capacity for antimicrobial resistance: Laboratory capacity strengthening for drug resistant infections in low and middle income countries. Wellcome open research, 2. 91-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.12523.1

Shann, Frank; Nohynek, Hanna; Scott, J Anthony; Hesseling, Anneke; Flanagan, Katie L; Working Group on Nonspecific Effects of Vaccines; (2010) Randomized trials to study the nonspecific effects of vaccines in children in low-income countries. The Pediatric infectious disease journal, 29 (5). pp. 457-461. ISSN 0891-3668 DOI: https://doi.org/10.1097/INF.0b013e3181c91361 Full text not available from this repository.

Shi, Ting; McAllister, David A; O'Brien, Katherine L; Simoes, Eric AF; Madhi, Shabir A; Gessner, Bradford D; Polack, Fernando P; Balsells, Evelyn; Acacio, Sozinho; Aguayo, Claudia; +113 more... Alassani, Issifou; Ali, Asad; Antonio, Martin; Awasthi, Shally; Awori, Juliet O; Azziz-Baumgartner, Eduardo; Baggett, Henry C; Baillie, Vicky L; Balmaseda, Angel; Barahona, Alfredo; Basnet, Sudha; Bassat, Quique; Basualdo, Wilma; Bigogo, Godfrey; Bont, Louis; Breiman, Robert F; Brooks, W Abdullah; Broor, Shobha; Bruce, Nigel; Bruden, Dana; Buchy, Philippe; Campbell, Stuart; Carosone-Link, Phyllis; Chadha, Mandeep; Chipeta, James; Chou, Monidarin; Clara, Wilfrido; Cohen, Cheryl; de Cuellar, Elizabeth; Dang, Duc-Anh; Dash-Yandag, Budragchaagiin; Deloria-Knoll, Maria; Dherani, Mukesh; Eap, Tekchheng; Ebruke, Bernard E; Echavarria, Marcela; de Freitas Lázaro Emediato, Carla Cecília; Fasce, Rodrigo A; Feikin, Daniel R; Feng, Luzhao; Gentile, Angela; Gordon, Aubree; Goswami, Doli; Goyet, Sophie; Groome, Michelle; Halasa, Natasha; Hirve, Siddhivinayak; Homaira, Nusrat; Howie, Stephen RC; Jara, Jorge; Jroundi, Imane; Kartasasmita, Cissy B; Khuri-Bulos, Najwa; Kotloff, Karen L; Krishnan, Anand; Libster, Romina; Lopez, Olga; Lucero, Marilla G; Lucion, Florencia; Lupisan, Socorro P; Marcone, Debora N; McCracken, John P; Mejia, Mario; Moisi, Jennifer C; Montgomery, Joel M; Moore, David P; Moraleda, Cinta; Moyes, Jocelyn; Munywoki, Patrick; Mutyara, Kuswandewi; Nicol, Mark P; Nokes, D James; Nymadawa, Pagbajabyn; da Costa Oliveira, Maria Tereza; Oshitani, Histoshi; Pandey, Nitin; Paranhos-Baccalà, Gláucia; Phillips, Lia N; Picot, Valentina Sanchez; Rahman, Mustafizur; Rakoto-Andrianarivelo, Mala; Rasmussen, Zeba A; Rath, Barbara A; Robinson, Annick; Romero, Candice; Russomando, Graciela; Salimi, Vahid; Sawatwong, Pongpun; Scheltema, Nienke; Schweiger, Brunhilde; Scott, J Anthony G; Seidenberg, Phil; Shen, Kunling; Singleton, Rosalyn; Sotomayor, Viviana; Strand, Tor A; Sutanto, Agustinus; Sylla, Mariam; Tapia, Milagritos D; Thamthitiwat, Somsak; Thomas, Elizabeth D; Tokarz, Rafal; Turner, Claudia; Venter, Marietjie; Waicharoen, Sunthareeya; Wang, Jianwei; Watthanaworawit, Wanitda; Yoshida, Lay-Myint; Yu, Hongjie; Zar, Heather J; Campbell, Harry; Nair, Harish; RSV Global Epidemiology Network; (2017) Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study. Lancet, 390 (10098). pp. 946-958. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(17)30938-8

Silaba, Micah; Ooko, Michael; Bottomley, Christian; Sande, Joyce; Benamore, Rachel; Park, Kate; Ignas, James; Maitland, Kathryn; Mturi, Neema; Makumi, Anne; +16 more... Otiende, Mark; Kagwanja, Stanley; Safari, Sylvester; Ochola, Victor; Bwanaali, Tahreni; Bauni, Evasius; Gleeson, Fergus; Deloria Knoll, Maria; Adetifa, Ifedayo; Marsh, Kevin; Williams, Thomas N; Kamau, Tatu; Sharif, Shahnaaz; Levine, Orin S; Hammitt, Laura L; Scott, J Anthony G; (2019) Effect of 10-valent pneumococcal conjugate vaccine on the incidence of radiologically-confirmed pneumonia and clinically-defined pneumonia in Kenyan children: an interrupted time-series analysis. The Lancet Global Health, 7 (3). e337-e346. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(18)30491-1

Taylor, Allan W; Blau, Dianna M; Bassat, Quique; Onyango, Dickens; Kotloff, Karen L; Arifeen, Shams El; Mandomando, Inacio; Chawana, Richard; Baillie, Vicky L; Akelo, Victor; +23 more... Tapia, Milagritos D; Salzberg, Navit T; Keita, Adama Mamby; Morris, Timothy; Nair, Shailesh; Assefa, Nega; Seale, Anna C; Scott, J Anthony G; Kaiser, Reinhard; Jambai, Amara; Barr, Beth A Tippet; Gurley, Emily S; Ordi, Jaume; Zaki, Sherif R; Sow, Samba O; Islam, Farzana; Rahman, Afruna; Dowell, Scott F; Koplan, Jeffrey P; Raghunathan, Pratima L; Madhi, Shabir A; Breiman, Robert F; CHAMPS Consortium; (2020) Initial findings from a novel population-based child mortality surveillance approach: a descriptive study. LANCET GLOBAL HEALTH, 8 (7). e909-e919. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(20)30205-9

Thea, Donald M; Seidenberg, Phil; Park, Daniel E; Mwananyanda, Lawrence; Fu, Wei; Shi, Qiyuan; Baggett, Henry C; Brooks, W Abdullah; Feikin, Daniel R; Howie, Stephen RC; +29 more... Knoll, Maria Deloria; Kotloff, Karen L; Levine, Orin S; Madhi, Shabir A; O'Brien, Katherine L; Scott, J Anthony G; Antonio, Martin; Awori, Juliet O; Baillie, Vicky L; DeLuca, Andrea N; Driscoll, Amanda J; Higdon, Melissa M; Hossain, Lokman; Jahan, Yasmin; Karron, Ruth A; Kazungu, Sidi; Li, Mengying; Moore, David P; Morpeth, Susan C; Ofordile, Ogochukwu; Prosperi, Christine; Sangwichian, Ornuma; Sawatwong, Pongpun; Sylla, Mamadou; Tapia, Milagritos D; Zeger, Scott L; Murdoch, David R; Hammitt, Laura L; PERCH Study Group; (2017) Limited Utility of Polymerase Chain Reaction in Induced Sputum Specimens for Determining the Causes of Childhood Pneumonia in Resource-Poor Settings: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study. Clinical infectious diseases, 64 (suppl_). S289-S300. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix098

Tigoi, Caroline C; Gatakaa, Hellen; Karani, Angela; Mugo, Daisy; Kungu, Stella; Wanjiru, Eva; Jomo, Jane; Musyimi, Robert; Ojal, John; Glass, Nina E; +2 more... Abdullahi, Osman; Scott, J Anthony G; (2012) Rates of acquisition of pneumococcal colonization and transmission probabilities, by serotype, among newborn infants in Kilifi District, Kenya. Clinical infectious diseases, 55 (2). pp. 180-188. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cis371

Turner, Gareth DH; Bunthi, Charatdao; Wonodi, Chizoba B; Morpeth, Susan C; Molyneux, Catherine S; Zaki, Sherif R; Levine, Orin S; Murdoch, David R; Scott, J Anthony G; (2012) The role of postmortem studies in pneumonia etiology research. Clinical infectious diseases, 54 Sup (Suppl ). S165-S171. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cir1062

Uyoga, Sophie; Adetifa, Ifedayo MO; Karanja, Henry K; Nyagwange, James; Tuju, James; Wanjiku, Perpetual; Aman, Rashid; Mwangangi, Mercy; Amoth, Patrick; Kasera, Kadondi; +29 more... Ng'ang'a, Wangari; Rombo, Charles; Yegon, Christine; Kithi, Khamisi; Odhiambo, Elizabeth; Rotich, Thomas; Orgut, Irene; Kihara, Sammy; Otiende, Mark; Bottomley, Christian; Mupe, Zonia N; Kagucia, Eunice W; Gallagher, Katherine E; Etyang, Anthony; Voller, Shirine; Gitonga, John N; Mugo, Daisy; Agoti, Charles N; Otieno, Edward; Ndwiga, Leonard; Lambe, Teresa; Wright, Daniel; Barasa, Edwine; Tsofa, Benjamin; Bejon, Philip; Ochola-Oyier, Lynette I; Agweyu, Ambrose; Scott, J Anthony G; Warimwe, George M; (2020) Seroprevalence of anti-SARS-CoV-2 IgG antibodies in Kenyan blood donors. Science, 371 (6524). pp. 79-82. ISSN 0036-8075 DOI: https://doi.org/10.1126/science.abe1916

Uyoga, Sophie; Adetifa, Ifedayo MO; Otiende, Mark; Yegon, Christine; Agweyu, Ambrose; Warimwe, George M; Scott, J Anthony G; (2021) Prevalence of SARS-CoV-2 Antibodies From a National Serosurveillance of Kenyan Blood Donors, January-March 2021. Journal of the American Medical Association, 326 (14). pp. 1436-1438. ISSN 0098-7484 DOI: https://doi.org/10.1001/jama.2021.15265 Full text not available from this repository.

Uyoga, Sophie; Macharia, Alex W; Mochamah, George; Ndila, Carolyne M; Nyutu, Gideon; Makale, Johnstone; Tendwa, Metrine; Nyatichi, Emily; Ojal, John; Otiende, Mark; +8 more... Shebe, Mohammed; Awuondo, Kennedy O; Mturi, Neema; Peshu, Norbert; Tsofa, Benjamin; Maitland, Kathryn; Scott, J Anthony G; Williams, Thomas N; (2019) The epidemiology of sickle cell disease in children recruited in infancy in Kilifi, Kenya: a prospective cohort study. Lancet Global Health, 7 (10). e1458-e1466. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(19)30328-6

Uyoga, Sophie; Macharia, Alex W; Ndila, Carolyne M; Nyutu, Gideon; Shebe, Mohammed; Awuondo, Kennedy O; Mturi, Neema; Peshu, Norbert; Tsofa, Benjamin; Scott, J Anthony G; +2 more... Maitland, Kathryn; Williams, Thomas N; (2019) The indirect health effects of malaria estimated from health advantages of the sickle cell trait. Nature Communications, 10 (1). 856-. DOI: https://doi.org/10.1038/s41467-019-08775-0

Uyoga, Sophie; Macharia, Alex W; Ndila, Carolyne M; Nyutu, Gideon; Shebe, Mohammed; Awuondo, Kennedy O; Mturi, Neema; Peshu, Norbert; Tsofa, Benjamin; Scott, J Anthony G; +2 more... Maitland, Kathryn; Williams, Thomas N; (2020) Glucose-6-phosphate dehydrogenase deficiency and susceptibility to childhood diseases in Kilifi, Kenya. BLOOD ADVANCES, 4 (23). pp. 5942-5950. ISSN 2473-9529 DOI: https://doi.org/10.1182/bloodadvances.2020003015

Verani, Jennifer R; Baqui, Abdullah H; Broome, Claire V; Cherian, Thomas; Cohen, Cheryl; Farrar, Jennifer L; Feikin, Daniel R; Groome, Michelle J; Hajjeh, Rana A; Johnson, Hope L; +15 more... Madhi, Shabir A; Mulholland, Kim; O'Brien, Katherine L; Parashar, Umesh D; Patel, Manish M; Rodrigues, Laura C; Santosham, Mathuram; Scott, J Anthony; Smith, Peter G; Sommerfelt, Halvor; Tate, Jacqueline E; Victor, J Chris; Whitney, Cynthia G; Zaidi, Anita K; Zell, Elizabeth R; (2017) Case-control vaccine effectiveness studies: Data collection, analysis and reporting results. Vaccine, 35 (25). pp. 3303-3308. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.04.035

Verani, Jennifer R; Baqui, Abdullah H; Broome, Claire V; Cherian, Thomas; Cohen, Cheryl; Farrar, Jennifer L; Feikin, Daniel R; Groome, Michelle J; Hajjeh, Rana A; Johnson, Hope L; +15 more... Madhi, Shabir A; Mulholland, Kim; O'Brien, Katherine L; Parashar, Umesh D; Patel, Manish M; Rodrigues, Laura C; Santosham, Mathuram; Scott, J Anthony; Smith, Peter G; Sommerfelt, Halvor; Tate, Jacqueline E; Victor, J Chris; Whitney, Cynthia G; Zaidi, Anita K; Zell, Elizabeth R; (2017) Case-control vaccine effectiveness studies: Preparation, design, and enrollment of cases and controls. Vaccine, 35 (25). pp. 3295-3302. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2017.04.037

Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; +8 more... Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen; (2020) UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. MedRxiv. DOI: https://doi.org/10.1101/2020.08.24.20179192

Walker, Jemma L; Grint, Daniel J; Strongman, Helen; Eggo, Rosalind M; Peppa, Maria; Minassian, Caroline; Mansfield, Kathryn E; Rentsch, Christopher T; Douglas, Ian J; Mathur, Rohini; +8 more... Wong, Angel YS; Quint, Jennifer K; Andrews, Nick; Bernal, Jamie Lopez; Scott, J Anthony; Ramsay, Mary; Smeeth, Liam; McDonald, Helen I; (2021) UK prevalence of underlying conditions which increase the risk of severe COVID-19 disease: a point prevalence study using electronic health records. BMC public health, 21 (1). 484-. ISSN 1471-2458 DOI: https://doi.org/10.1186/s12889-021-10427-2